Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006265

Physical Location & Seq

Genomic Coordinates Reverse (-)

47264111 .. 47265317

Gene Structure 1207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0297600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGTTTTTGGTGGTTCTACAACAGTCGAAGCAAAAAGCTTTAATCGTAGGAAGCAGTTATCTCCAGTTGTATTTTACGGGTCTCCACATGGTGTACCTCCAAAGCAACCATCAAGGTTGTTGCTGCGAGTGTTACGTGAGATACGTGTTGATCTCACTGCACAGAAACGATTAAGCTCAAGGAAGGAAGTATGGGCTACATTTCCAAGGCAGGAGGAAGCAATGCAGTTTGCCAAACGGCACGAGAATGTTCACGTTTTTAGTTATCAAGATCACTTTAGTGGACAAAGAAGGTTCCTTGTTTCAAGTTATGATGAGTTTTGGAGAAGGTACAAAATTATGGAGTCCAAGTTTCGTCACCATTACGAAGTCATTCAGGAGGATTTACCATGCCACCTTTATTTTGACCTGGAGTTCAATAAGAAAGACAATGGAAACAGAAAGGTGGATTCGGCTGTAGTGCTGCCAGTTCTTCTGCCAGCAAGGTGGATTCGGCTCTTTTTAGGTAGGGGGTTCATGATAGGAGTGAACAGTTGCCATAAAGGCGACAAAGTTGAAGAGATACTTGGAAATGAGGCGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0010109 GO:0019222 GO:0031323 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0042548 GO:0042550 GO:0043467 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0050789 GO:0050794 GO:0051186 GO:0051188 GO:0065007 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 MR_MLE_C TPP_enzyme_C TPP_enzyme_M_2 TPP_enzyme_N

Protein Analysis

194

Amino Acids

22.81

Weight (kDa)

9.71

Isoelectric Point (pI)

70.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68890 AT1G68890
fragaria_vesca	FvH4_4g28800 FvH4_4g28800 FvH4_4g28800 FvH4_4g28800 FvH4_4g28800
malus_domestica	MD13G1054200.v1.1 MD16G1052600.v1.1
prunus_persica	Prupe.1G298000_v2.0.a1 Prupe.1G298000_v2.0.a1 Prupe.1G298000_v2.0.a1 Prupe.1G298000_v2.0.a1
pyrus_communis	pycom16g04620
rosa_chinensis	RchiOBHm_Chr4g0436931 RchiOBHm_Chr4g0436941
rosa_laevigata	RLG00000006485
rosa_multiflora	Rmu_sc0011344.1_g000001 Rmu_ssc0000302.1_g000001 Rmu_ssc0000328.1_g000001
rosa_roxburghii	Rroxscaffold_5G00378000
rosa_rugosa	Rorug04G0297600
rosa_samantha	Rh4AG351800 Rh4BG360800 Rh4CG375100 Rh4DG355000
rosa_wichuraiana	Rw4G030790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AdeI	CACNNNGTG	1 cut(s)	92
AfaI	GTAC	2 cut(s)	96, 332
AflIII	ACRYGT	1 cut(s)	145
AgsI	TTSAA	3 cut(s)	306, 418, 557
AjnI	CCWGG	1 cut(s)	408
AjuI	GAANNNNNNNTTGG	2 cut(s)	549, 581
AleI	CACNNNNGTG	1 cut(s)	279
AluBI	AGCT	2 cut(s)	39, 177
AluI	AGCT	2 cut(s)	39, 177
Alw26I	GTCTC	1 cut(s)	87
ApeKI	GCWGC	2 cut(s)	124, 463
Asp700I	GAANNNNTTC	1 cut(s)	372
AsuHPI	GGTGA	1 cut(s)	350
BauI	CACGAG	1 cut(s)	242
BbvI	GCAGC	2 cut(s)	111, 450
BccI	CCATC	1 cut(s)	118
BceAI	ACGGC	1 cut(s)	254
BciT130I	CCWGG	1 cut(s)	410
BcoDI	GTCTC	1 cut(s)	87
BfmI	CTRYAG	1 cut(s)	456
BglI	GCCNNNNNGGC	1 cut(s)	543
BisI	GCNGC	2 cut(s)	125, 464
BlsI	GCNGC	2 cut(s)	126, 465
Bme1390I	CCNGG	1 cut(s)	410
BmiI	GGNNCC	1 cut(s)	296
BmrFI	CCNGG	1 cut(s)	410
BpmI	CTGGAG	2 cut(s)	48, 431
BpuEI	CTTGAG	1 cut(s)	163
BsaAI	YACGTR	2 cut(s)	137, 146
BsaI	GGTCTC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	206
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bse1I	ACTGG	2 cut(s)	65, 467
Bse3DI	GCAATG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	206
BseMI	GCAATG	1 cut(s)	228
BseNI	ACTGG	2 cut(s)	65, 467
BseXI	GCAGC	2 cut(s)	111, 450
BsgI	GTGCAG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	87
Bso31I	GGTCTC	1 cut(s)	87
Bsp143I	GATC	2 cut(s)	151, 271
BspHI	TCATGA	1 cut(s)	516
BspLI	GGNNCC	1 cut(s)	296
BspTNI	GGTCTC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	65, 467
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	2 cut(s)	151, 271
BssSI	CACGAG	1 cut(s)	242
BssT1I	CCWWGG	1 cut(s)	206
Bst2BI	CACGAG	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	2 cut(s)	25, 533
Bst6I	CTCTTC	1 cut(s)	552
BstBAI	YACGTR	2 cut(s)	137, 146
BstC8I	GCNNGC	1 cut(s)	480
BstKTI	GATC	2 cut(s)	154, 274
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	2 cut(s)	151, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	543
BstNI	CCWGG	1 cut(s)	410
BstSCI	CCNGG	1 cut(s)	408
BstSFI	CTRYAG	1 cut(s)	456
BstV1I	GCAGC	2 cut(s)	111, 450
BstXI	CCANNNNNNTGG	1 cut(s)	486
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	480
CciI	TCATGA	1 cut(s)	516
Csp6I	GTAC	2 cut(s)	95, 331
CviAII	CATG	3 cut(s)	89, 390, 517
CviJI	RGCY	5 cut(s)	39, 177, 197, 455, 496
CviKI_1	RGCY	5 cut(s)	39, 177, 197, 455, 496
CviQI	GTAC	2 cut(s)	95, 331
DpnI	GATC	2 cut(s)	153, 273
DpnII	GATC	2 cut(s)	151, 271
DraIII	CACNNNGTG	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	206
Eco31I	GGTCTC	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	408
EcoT14I	CCWWGG	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	3 cut(s)	92, 393, 520
FaiI	YATR	7 cut(s)	90, 193, 312, 341, 391, 518, 540
FalI	AAGNNNNNCTT	2 cut(s)	549, 581
FatI	CATG	3 cut(s)	88, 389, 516
Fnu4HI	GCNGC	2 cut(s)	125, 464
Fsp4HI	GCNGC	2 cut(s)	125, 464
GluI	GCNGC	2 cut(s)	125, 464
GsuI	CTGGAG	2 cut(s)	48, 431
Hin1II	CATG	3 cut(s)	92, 393, 520
HindIII	AAGCTT	1 cut(s)	37
HinfI	GANTC	3 cut(s)	344, 449, 490
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	4 cut(s)	95, 253, 284, 529
Hpy188III	TCNNGA	3 cut(s)	269, 377, 517
Hpy8I	GTNNAC	4 cut(s)	95, 253, 284, 529
HpyAV	CCTTC	3 cut(s)	178, 285, 321
HpyCH4III	ACNGT	2 cut(s)	25, 533
HpyCH4IV	ACGT	3 cut(s)	136, 145, 255
HpyCH4V	TGCA	2 cut(s)	161, 226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	543
HpySE526I	ACGT	3 cut(s)	136, 145, 255
Hsp92II	CATG	3 cut(s)	92, 393, 520
Kzo9I	GATC	2 cut(s)	151, 271
LpnPI	CCDG	7 cut(s)	78, 197, 362, 395, 422, 480, 492
Lsp1109I	GCAGC	2 cut(s)	111, 450
MaeII	ACGT	3 cut(s)	136, 145, 255
MaeIII	GTNAC	2 cut(s)	132, 356
MalI	GATC	2 cut(s)	153, 273
MboI	GATC	2 cut(s)	151, 271
MboII	GAAGA	2 cut(s)	464, 569
MluCI	AATT	1 cut(s)	336
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	4 cut(s)	108, 208, 373, 568
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	2 cut(s)	42, 173
MslI	CAYNNNNRTG	2 cut(s)	246, 279
MspR9I	CCNGG	1 cut(s)	410
MvaI	CCWGG	1 cut(s)	410
MwoI	GCNNNNNNNGC	1 cut(s)	543
NdeII	GATC	2 cut(s)	151, 271
NlaIII	CATG	3 cut(s)	92, 393, 520
NlaIV	GGNNCC	1 cut(s)	296
NmuCI	GTSAC	1 cut(s)	356
OliI	CACNNNNGTG	1 cut(s)	279
PagI	TCATGA	1 cut(s)	516
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	2 cut(s)	449, 490
PkrI	GCNGC	2 cut(s)	126, 465
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
Ppu21I	YACGTR	2 cut(s)	137, 146
Psp6I	CCWGG	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	408
PspN4I	GGNNCC	1 cut(s)	296
RsaI	GTAC	2 cut(s)	96, 332
RsaNI	GTAC	2 cut(s)	95, 331
RseI	CAYNNNNRTG	2 cut(s)	246, 279
SaqAI	TTAA	2 cut(s)	42, 173
SatI	GCNGC	2 cut(s)	125, 464
Sau3AI	GATC	2 cut(s)	151, 271
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	1 cut(s)	410
SfcI	CTRYAG	1 cut(s)	456
SmiMI	CAYNNNNRTG	2 cut(s)	246, 279
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
Sse9I	AATT	1 cut(s)	336
StyD4I	CCNGG	1 cut(s)	408
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	2 cut(s)	25, 533
TaiI	ACGT	3 cut(s)	139, 148, 258
TaqI	TCGA	1 cut(s)	27
TasI	AATT	1 cut(s)	336
TfiI	GAWTC	2 cut(s)	449, 490
Tru1I	TTAA	2 cut(s)	42, 173
Tru9I	TTAA	2 cut(s)	42, 173
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	1 cut(s)	356
TseI	GCWGC	2 cut(s)	124, 463
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	1 cut(s)	505
TspRI	CASTG	1 cut(s)	163
XmnI	GAANNNNTTC	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.