Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000302.1

Orthogroup ID

OG0006265

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1771

Gene Structure 1771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000302.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

gatttttgtctctttctaccatcagttggatcatgccagtaaaatgtgcttctcagtgcaagattgtggcaacatcaacactgtttgggcatcacttatagttgaagaatgttctcgacttggtttgacgtatttttgtgtagctccaggatcaagatcatcccccctagctgttgctgcatccactcatccacttattacatgtgttgtatgttatgatgaacgctcacttgcatttcatgctgttgggtatgcaagaggatctggcaaaccagcagtagtcataacatcatctggcactgcagtttcaaatcttcttcctgctgtggttgaggctagtcaagattttgtaccacttatattgctcacagctgatcgtcctgcagaacttcaggatgctggagcaaaccaagcaatcaatcaggtaaaccattttggctcttttgcacggtttttcttttgccttcctgcacccacagatcatatttcagctcgcatggtgcttacaacactcgacaatgctgtacattgggcaacctcttcaccatgtgggcctgttcatattaactgtcctttcagggagccactagaagatagccctagaaaatggatgttgagttgtttaaatggattaaaccattggatgtctaattctgaaccatttaccaagtatattcaagtacaacatgctcatacaaggaatgatggttgtggcggaatgtcagaaattctaaatgtaattaagggaactaacaagggtcttctacttatcggtgcaatccattcagaagatgagatgtgggcagttcttctcttggctaaacaccttcactggcctgttatagctgacatcttgtcaggattacgattgagaaagcttttgactagtttccctgaagttgacaatgatttattgtttgttgatcatcttgaccatgccct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0010109 GO:0019222 GO:0031323 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0042548 GO:0042550 GO:0043467 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0050789 GO:0050794 GO:0051186 GO:0051188 GO:0065007 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 MR_MLE_C TPP_enzyme_C TPP_enzyme_M_2 TPP_enzyme_N

Protein Analysis

314

Amino Acids

34.38

Weight (kDa)

6.03

Isoelectric Point (pI)

49.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68890 AT1G68890
fragaria_vesca	FvH4_4g28800 FvH4_4g28800 FvH4_4g28800 FvH4_4g28800 FvH4_4g28800
malus_domestica	MD13G1054200.v1.1 MD16G1052600.v1.1
prunus_persica	Prupe.1G298000_v2.0.a1 Prupe.1G298000_v2.0.a1 Prupe.1G298000_v2.0.a1 Prupe.1G298000_v2.0.a1
pyrus_communis	pycom16g04620
rosa_chinensis	RchiOBHm_Chr4g0436931 RchiOBHm_Chr4g0436941
rosa_laevigata	RLG00000006485
rosa_multiflora	Rmu_sc0011344.1_g000001 Rmu_ssc0000302.1_g000001 Rmu_ssc0000328.1_g000001
rosa_roxburghii	Rroxscaffold_5G00378000
rosa_rugosa	Rorug04G0297600
rosa_samantha	Rh4AG351800 Rh4BG360800 Rh4CG375100 Rh4DG355000
rosa_wichuraiana	Rw4G030790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	26
AciI	CCGC	1 cut(s)	715
AclWI	GGATC	3 cut(s)	37, 158, 269
AcsI	RAATTY	1 cut(s)	727
AcuI	CTGAAG	2 cut(s)	375, 916
AdeI	CACNNNGTG	1 cut(s)	549
AfaI	GTAC	3 cut(s)	352, 526, 682
AfiI	CCNNNNNNNGG	1 cut(s)	26
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	3 cut(s)	105, 310, 678
AhdI	GACNNNNNGTC	1 cut(s)	854
AhlI	ACTAGT	1 cut(s)	885
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	6 cut(s)	144, 171, 372, 492, 846, 878
AluI	AGCT	6 cut(s)	144, 171, 372, 492, 846, 878
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	3 cut(s)	37, 158, 269
AoxI	GGCC	2 cut(s)	552, 834
ApeKI	GCWGC	1 cut(s)	177
ApoI	RAATTY	1 cut(s)	727
AspS9I	GGNCC	1 cut(s)	552
AsuHPI	GGTGA	1 cut(s)	535
BbsI	GAAGAC	1 cut(s)	753
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	2 cut(s)	28, 699
BciT130I	CCWGG	1 cut(s)	148
BclI	TGATCA	1 cut(s)	923
BcoDI	GTCTC	1 cut(s)	14
BcuI	ACTAGT	1 cut(s)	885
BfaI	CTAG	5 cut(s)	168, 337, 588, 601, 886
BfmI	CTRYAG	2 cut(s)	301, 382
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
Bme1390I	CCNGG	1 cut(s)	148
BmeRI	GACNNNNNGTC	1 cut(s)	854
BmgT120I	GGNCC	1 cut(s)	552
BmiI	GGNNCC	1 cut(s)	583
BmrFI	CCNGG	1 cut(s)	148
BmsI	GCATC	3 cut(s)	99, 189, 386
BpiI	GAAGAC	1 cut(s)	753
BpmI	CTGGAG	2 cut(s)	130, 421
BsaBI	GATNNNNATC	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	37, 837
Bse8I	GATNNNNATC	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	148
BseGI	GGATG	6 cut(s)	159, 180, 188, 401, 616, 649
BseJI	GATNNNNATC	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	67
BseNI	ACTGG	2 cut(s)	37, 837
BseXI	GCAGC	1 cut(s)	164
BsgI	GTGCAG	1 cut(s)	454
BshFI	GGCC	2 cut(s)	554, 836
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	14
BsnI	GGCC	2 cut(s)	554, 836
Bsp1407I	TGTACA	1 cut(s)	524
Bsp143I	GATC	7 cut(s)	29, 150, 156, 261, 374, 479, 923
BspACI	CCGC	1 cut(s)	715
BspANI	GGCC	2 cut(s)	554, 836
BspCNI	CTCAG	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	583
BspMAI	CTGCAG	2 cut(s)	305, 386
BspPI	GGATC	3 cut(s)	37, 158, 269
BsrGI	TGTACA	1 cut(s)	524
BsrI	ACTGG	2 cut(s)	37, 837
BssMI	GATC	7 cut(s)	29, 150, 156, 261, 374, 479, 923
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	3 cut(s)	83, 451, 570
Bst6I	CTCTTC	1 cut(s)	545
BstAPI	GCANNNNNTGC	1 cut(s)	240
BstAUI	TGTACA	1 cut(s)	524
BstC8I	GCNNGC	1 cut(s)	494
BstDEI	CTNAG	1 cut(s)	53
BstF5I	GGATG	6 cut(s)	159, 180, 188, 401, 616, 649
BstKTI	GATC	7 cut(s)	32, 153, 159, 264, 377, 482, 926
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	7 cut(s)	29, 150, 156, 261, 374, 479, 923
BstMWI	GCNNNNNNNGC	3 cut(s)	177, 240, 411
BstNI	CCWGG	1 cut(s)	148
BstNSI	RCATGY	2 cut(s)	205, 690
BstSCI	CCNGG	1 cut(s)	146
BstSFI	CTRYAG	2 cut(s)	301, 382
BstV1I	GCAGC	1 cut(s)	164
BstV2I	GAAGAC	1 cut(s)	753
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	554, 836
BtsCI	GGATG	6 cut(s)	159, 180, 188, 401, 616, 649
BtsI	GCAGTG	1 cut(s)	298
BtsIMutI	CAGTG	4 cut(s)	61, 79, 298, 830
Cac8I	GCNNGC	1 cut(s)	494
Cfr13I	GGNCC	1 cut(s)	552
Csp6I	GTAC	3 cut(s)	351, 525, 681
CspCI	CAANNNNNGTGG	2 cut(s)	343, 378
CviAII	CATG	7 cut(s)	33, 202, 240, 497, 547, 687, 936
CviQI	GTAC	3 cut(s)	351, 525, 681
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	7 cut(s)	31, 152, 158, 263, 376, 481, 925
DpnII	GATC	7 cut(s)	29, 150, 156, 261, 374, 479, 923
DraI	TTTAAA	1 cut(s)	625
DraIII	CACNNNGTG	1 cut(s)	549
DriI	GACNNNNNGTC	1 cut(s)	854
Eam1104I	CTCTTC	1 cut(s)	545
Eam1105I	GACNNNNNGTC	1 cut(s)	854
EarI	CTCTTC	1 cut(s)	545
EciI	GGCGGA	1 cut(s)	730
Eco57I	CTGAAG	2 cut(s)	375, 916
EcoRII	CCWGG	1 cut(s)	146
FaeI	CATG	7 cut(s)	36, 205, 243, 500, 550, 690, 939
FatI	CATG	7 cut(s)	32, 201, 239, 496, 546, 686, 935
FbaI	TGATCA	1 cut(s)	923
Fnu4HI	GCNGC	1 cut(s)	178
FokI	GGATG	6 cut(s)	146, 167, 175, 408, 623, 656
Fsp4HI	GCNGC	1 cut(s)	178
FspBI	CTAG	5 cut(s)	168, 337, 588, 601, 886
GluI	GCNGC	1 cut(s)	178
GsuI	CTGGAG	2 cut(s)	130, 421
HaeIII	GGCC	2 cut(s)	554, 836
Hin1II	CATG	7 cut(s)	36, 205, 243, 500, 550, 690, 939
HincII	GTYRAC	1 cut(s)	902
HindII	GTYRAC	1 cut(s)	902
HindIII	AAGCTT	1 cut(s)	876
HphI	GGTGA	1 cut(s)	535
Hpy166II	GTNNAC	2 cut(s)	428, 902
Hpy188I	TCNGA	3 cut(s)	656, 725, 788
Hpy188III	TCNNGA	6 cut(s)	115, 154, 342, 393, 859, 930
Hpy8I	GTNNAC	2 cut(s)	428, 902
HpyAV	CCTTC	2 cut(s)	474, 837
HpyCH4III	ACNGT	3 cut(s)	83, 451, 570
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	9 cut(s)	59, 180, 234, 255, 303, 384, 447, 471, 777
HpyF10VI	GCNNNNNNNGC	3 cut(s)	177, 240, 411
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	7 cut(s)	36, 205, 243, 500, 550, 690, 939
Ksp22I	TGATCA	1 cut(s)	923
Kzo9I	GATC	7 cut(s)	29, 150, 156, 261, 374, 479, 923
LmnI	GCTCC	3 cut(s)	149, 402, 581
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	3 cut(s)	99, 189, 386
MaeI	CTAG	5 cut(s)	168, 337, 588, 601, 886
MaeII	ACGT	1 cut(s)	129
MalI	GATC	7 cut(s)	31, 152, 158, 263, 376, 481, 925
MboI	GATC	7 cut(s)	29, 150, 156, 261, 374, 479, 923
MboII	GAAGA	8 cut(s)	117, 306, 309, 532, 603, 753, 801, 801
MflI	RGATCY	1 cut(s)	261
MluCI	AATT	3 cut(s)	650, 727, 739
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	3 cut(s)	252, 326, 548
MseI	TTAA	4 cut(s)	565, 624, 633, 742
MspA1I	CMGCKG	1 cut(s)	372
MspR9I	CCNGG	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	3 cut(s)	177, 240, 411
NdeII	GATC	7 cut(s)	29, 150, 156, 261, 374, 479, 923
NlaIII	CATG	7 cut(s)	36, 205, 243, 500, 550, 690, 939
NlaIV	GGNNCC	1 cut(s)	583
NspI	RCATGY	2 cut(s)	205, 690
PciI	ACATGT	1 cut(s)	201
PflMI	CCANNNNNTGG	1 cut(s)	26
PfoI	TCCNGGA	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	179
PscI	ACATGT	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	583
PspPI	GGNCC	1 cut(s)	552
PstI	CTGCAG	2 cut(s)	305, 386
PsuI	RGATCY	1 cut(s)	261
PvuII	CAGCTG	1 cut(s)	372
RsaI	GTAC	3 cut(s)	352, 526, 682
RsaNI	GTAC	3 cut(s)	351, 525, 681
SaqAI	TTAA	4 cut(s)	565, 624, 633, 742
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	7 cut(s)	29, 150, 156, 261, 374, 479, 923
Sau96I	GGNCC	1 cut(s)	552
ScrFI	CCNGG	1 cut(s)	148
SfaNI	GCATC	3 cut(s)	99, 189, 386
SfcI	CTRYAG	2 cut(s)	301, 382
SpeI	ACTAGT	1 cut(s)	885
Sse9I	AATT	3 cut(s)	650, 727, 739
SsiI	CCGC	1 cut(s)	715
SspMI	CTAG	5 cut(s)	168, 337, 588, 601, 886
StyD4I	CCNGG	1 cut(s)	146
TaaI	ACNGT	3 cut(s)	83, 451, 570
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	116, 514
TasI	AATT	3 cut(s)	650, 727, 739
TatI	WGTACW	2 cut(s)	524, 680
Tru1I	TTAA	4 cut(s)	565, 624, 633, 742
Tru9I	TTAA	4 cut(s)	565, 624, 633, 742
TscAI	CASTG	4 cut(s)	61, 86, 305, 837
TseI	GCWGC	1 cut(s)	177
TspDTI	ATGAA	3 cut(s)	228, 235, 549
TspRI	CASTG	4 cut(s)	61, 86, 305, 837
Van91I	CCANNNNNTGG	1 cut(s)	26
XapI	RAATTY	1 cut(s)	727
XceI	RCATGY	2 cut(s)	205, 690
XspI	CTAG	5 cut(s)	168, 337, 588, 601, 886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.