MD13G1095300.v1.1

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
6708482 .. 6709624
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1095300.v1.1.491

Sequence Viewer

Length: 1143 bp
ATGGCGTTGCATGTTCAAATTCCGACCAAAATCTCCAGCATCGAAGACCAGGAAGAAGCTCCACTCTACGGAGACATCTTAGAGGCCATACTCTACCACGTGCCTCTCCTTCATCTCGTTCCTGCCTGTCACGTGTCAAAGTCCTGGAACCGCGCCGTCTCCTCCTCCCTCCGCCACCTCAAACGAAACGTCAAGCCCTGGCTCATTGTCCTCGCCCAAACCATCAGGTTTCCCTACAAGATCAACGCACGTGCCTACGACCCTGCCTCGCACGCTTGGATCGACATCCACTTTCAGCCGTCCATGAAATCCATCTCCACCCTCCGATGCTCCCACTCCACACTCCTCTACATGCTGTCTCCCTCCAAATTCGCCTTCTCAACCGACCCCCTCCACCACACGTGGAACCACGTGGACGCCCCGTTGGTCTGGCGCACCGACCCGATTGTCGCGCTGGTGGGCCACCGCATAGTCGTCGCAGGTGGCACCTGCGATTACGAGGACGACCCCCTGGCCGTCGAAATTTACGACACAAGGGAGCGCACATGGGGAACGTGCAACTCAATGCCCGCTATCCTCAAGGACTCGGCTGCCTCCACGTGGCTCTCTGTCGCCGTCGACGACAGCAAAATGTACGTGACGGATAAAAACACCGGTTTGACCTACACCTTCGATCCCGATTCCAATACGTGGTGTGGACCATACGATCTGTGTCCCGACAGGACGGTGTTCGGCGCCGTCACCGGATTCGCTAATGGCCGCTTTATTTTGGTGGAGGCGGTCGGAAGCGAGGGGAATTTGACAACCATGAAAGTGTGGGAAGTGAACGGGGTGTCGCTTGAGTGCAAAACTTTGATCGGGGAGATGCCGCCGGCGATGGTGGAGAAGCTGAAGGGCGAGACCGACTGCGCGGGGACGGTTTCGATGAGCTGCACGAGAGATATGGTGTGCCTGCATAACACTTTGTCGCCGGAGGAGCTGATCCTCTGCGAGCTTGTCGACGACGGGTGCAGGTGGGGGAGCGTAGGGAATGCGGTTGTGAACGACGGCACCCGAATGCAGAAGTTGGTGGTGACGTGTTCGAATGTTGGTCTACCGGATTTGCATAAAGCCGTACAACTTGGAGCGCTGAAAGTTGTTTGA

Protein Analysis

381

Amino Acids

41.93

Weight (kDa)

5.76

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_FKB95 PF25210 121 - 231 4.3e-09 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 470, 497, 1002
AasI GACNNNNNNGTC 1 cut(s) 446
Acc36I ACCTGC 3 cut(s) 470, 497, 1002
AccB1I GGYRCC 3 cut(s) 485, 734, 1049
AccB7I CCANNNNNTGG 1 cut(s) 690
AccI GTMKAC 3 cut(s) 618, 999, 1093
AccII CGCG 3 cut(s) 153, 452, 911
AciI CCGC 9 cut(s) 151, 172, 466, 570, 760, 779, 869, 911, 1034
AclWI GGATC 3 cut(s) 287, 668, 976
AcoI YGGCCR 2 cut(s) 513, 757
AcsI RAATTY 4 cut(s) 18, 368, 522, 796
AcuI CTGAAG 1 cut(s) 911
AcvI CACGTG 6 cut(s) 100, 133, 251, 402, 412, 600
AcyI GRCGYC 2 cut(s) 417, 735
AfaI GTAC 2 cut(s) 635, 1116
AfeI AGCGCT 1 cut(s) 1128
AfiI CCNNNNNNNGG 3 cut(s) 68, 600, 690
AflIII ACRYGT 3 cut(s) 132, 399, 1076
AgeI ACCGGT 1 cut(s) 653
AgsI TTSAA 1 cut(s) 17
AjiI CACGTC 1 cut(s) 1077
AjnI CCWGG 4 cut(s) 48, 143, 197, 510
AjuI GAANNNNNNNTTGG 2 cut(s) 359, 391
AluBI AGCT 5 cut(s) 59, 889, 930, 979, 994
AluI AGCT 5 cut(s) 59, 889, 930, 979, 994
Alw26I GTCTC 4 cut(s) 66, 163, 363, 893
AlwI GGATC 3 cut(s) 287, 668, 976
Aor51HI AGCGCT 1 cut(s) 1128
AoxI GGCC 4 cut(s) 84, 460, 513, 757
ApeKI GCWGC 2 cut(s) 590, 930
ApoI RAATTY 4 cut(s) 18, 368, 522, 796
ArsI GACNNNNNNTTYG 2 cut(s) 174, 206
AsiGI ACCGGT 1 cut(s) 653
AspLEI GCGC 7 cut(s) 155, 435, 454, 543, 737, 911, 1129
AspS9I GGNCC 2 cut(s) 460, 698
AsuHPI GGTGA 2 cut(s) 733, 1084
AsuII TTCGAA 1 cut(s) 1082
AvaII GGWCC 1 cut(s) 698
BanI GGYRCC 3 cut(s) 485, 734, 1049
BauI CACGAG 1 cut(s) 934
BbrPI CACGTG 6 cut(s) 100, 133, 251, 402, 412, 600
BbsI GAAGAC 1 cut(s) 51
BbvI GCAGC 2 cut(s) 577, 917
BccI CCATC 3 cut(s) 230, 320, 871
BceAI ACGGC 7 cut(s) 140, 283, 500, 599, 722, 1063, 1097
BcgI CGANNNNNNTGC 2 cut(s) 457, 491
BciT130I CCWGG 4 cut(s) 50, 145, 199, 512
BcoDI GTCTC 4 cut(s) 66, 163, 363, 893
BfoI RGCGCY 2 cut(s) 738, 1130
BfuAI ACCTGC 3 cut(s) 470, 497, 1002
BisI GCNGC 4 cut(s) 591, 760, 869, 931
BlsI GCNGC 4 cut(s) 592, 761, 870, 932
Bme1390I CCNGG 4 cut(s) 50, 145, 199, 512
Bme18I GGWCC 1 cut(s) 698
BmgBI CACGTC 1 cut(s) 1077
BmgT120I GGNCC 2 cut(s) 460, 698
BmiI GGNNCC 5 cut(s) 149, 407, 487, 736, 1051
BmrFI CCNGG 4 cut(s) 50, 145, 199, 512
BmsI GCATC 3 cut(s) 48, 317, 855
BpiI GAAGAC 1 cut(s) 51
BpmI CTGGAG 1 cut(s) 19
Bpu14I TTCGAA 1 cut(s) 1082
BpuEI CTTGAG 2 cut(s) 563, 860
BsaAI YACGTR 8 cut(s) 100, 133, 251, 402, 412, 600, 637, 690
BsaBI GATNNNNATC 1 cut(s) 284
BsaHI GRCGYC 2 cut(s) 417, 735
BsaI GGTCTC 1 cut(s) 893
BsaJI CCNNGG 2 cut(s) 197, 510
BsaWI WCCGGW 3 cut(s) 653, 743, 1096
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 600, 690
Bse118I RCCGGY 2 cut(s) 653, 871
Bse8I GATNNNNATC 1 cut(s) 284
BseBI CCWGG 4 cut(s) 50, 145, 199, 512
BseDI CCNNGG 2 cut(s) 197, 510
BseGI GGATG 1 cut(s) 285
BseJI GATNNNNATC 1 cut(s) 284
BseLI CCNNNNNNNGG 3 cut(s) 68, 600, 690
BseRI GAGGAG 4 cut(s) 151, 154, 335, 989
BseXI GCAGC 2 cut(s) 577, 917
BsgI GTGCAG 2 cut(s) 916, 1030
Bsh1236I CGCG 3 cut(s) 153, 452, 911
Bsh1285I CGRYCG 1 cut(s) 783
BshFI GGCC 4 cut(s) 86, 462, 515, 759
BshNI GGYRCC 3 cut(s) 485, 734, 1049
BshTI ACCGGT 1 cut(s) 653
BsiEI CGRYCG 1 cut(s) 783
BsiSI CCGG 5 cut(s) 654, 744, 872, 971, 1097
BslFI GGGAC 2 cut(s) 699, 928
BslI CCNNNNNNNGG 3 cut(s) 68, 600, 690
BsmAI GTCTC 4 cut(s) 66, 163, 363, 893
BsmBI CGTCTC 1 cut(s) 163
BsmFI GGGAC 2 cut(s) 699, 928
BsmI GAATGC 2 cut(s) 1036, 1062
BsnI GGCC 4 cut(s) 86, 462, 515, 759
Bso31I GGTCTC 1 cut(s) 893
Bsp119I TTCGAA 1 cut(s) 1082
Bsp143I GATC 6 cut(s) 240, 279, 673, 706, 855, 981
BspACI CCGC 9 cut(s) 151, 172, 466, 570, 760, 779, 869, 911, 1034
BspANI GGCC 4 cut(s) 86, 462, 515, 759
BspFNI CGCG 3 cut(s) 153, 452, 911
BspLI GGNNCC 5 cut(s) 149, 407, 487, 736, 1051
BspMI ACCTGC 3 cut(s) 470, 497, 1002
BspPI GGATC 3 cut(s) 287, 668, 976
BspT104I TTCGAA 1 cut(s) 1082
BspT107I GGYRCC 3 cut(s) 485, 734, 1049
BspTNI GGTCTC 1 cut(s) 893
BsrFI RCCGGY 2 cut(s) 653, 871
BssAI RCCGGY 2 cut(s) 653, 871
BssECI CCNNGG 2 cut(s) 197, 510
BssMI GATC 6 cut(s) 240, 279, 673, 706, 855, 981
BssNI GRCGYC 2 cut(s) 417, 735
BssSI CACGAG 1 cut(s) 934
Bst2BI CACGAG 1 cut(s) 934
Bst2UI CCWGG 4 cut(s) 50, 145, 199, 512
Bst4CI ACNGT 2 cut(s) 727, 919
BstACI GRCGYC 2 cut(s) 417, 735
BstBAI YACGTR 8 cut(s) 100, 133, 251, 402, 412, 600, 637, 690
BstBI TTCGAA 1 cut(s) 1082
BstC8I GCNNGC 5 cut(s) 273, 570, 873, 953, 992
BstDEI CTNAG 1 cut(s) 79
BstF5I GGATG 1 cut(s) 285
BstFNI CGCG 3 cut(s) 153, 452, 911
BstH2I RGCGCY 2 cut(s) 738, 1130
BstHHI GCGC 7 cut(s) 155, 435, 454, 543, 737, 911, 1129
BstKTI GATC 6 cut(s) 243, 282, 676, 709, 858, 984
BstMAI GTCTC 4 cut(s) 66, 163, 363, 893
BstMBI GATC 6 cut(s) 240, 279, 673, 706, 855, 981
BstMCI CGRYCG 1 cut(s) 783
BstMWI GCNNNNNNNGC 2 cut(s) 272, 976
BstNI CCWGG 4 cut(s) 50, 145, 199, 512
BstNSI RCATGY 2 cut(s) 14, 355
BstSCI CCNGG 4 cut(s) 48, 143, 197, 510
BstUI CGCG 3 cut(s) 153, 452, 911
BstV1I GCAGC 2 cut(s) 577, 917
BstV2I GAAGAC 1 cut(s) 51
BsuRI GGCC 4 cut(s) 86, 462, 515, 759
BtgZI GCGATG 1 cut(s) 890
BtrI CACGTC 1 cut(s) 1077
BtsCI GGATG 1 cut(s) 285
BveI ACCTGC 3 cut(s) 470, 497, 1002
Cac8I GCNNGC 5 cut(s) 273, 570, 873, 953, 992
CfoI GCGC 7 cut(s) 155, 435, 454, 543, 737, 911, 1129
Cfr10I RCCGGY 2 cut(s) 653, 871
Cfr13I GGNCC 2 cut(s) 460, 698
CseI GACGC 1 cut(s) 425
Csp6I GTAC 2 cut(s) 634, 1115
CspAI ACCGGT 1 cut(s) 653
CviAII CATG 5 cut(s) 11, 304, 352, 546, 808
CviQI GTAC 2 cut(s) 634, 1115
DdeI CTNAG 1 cut(s) 79
DinI GGCGCC 1 cut(s) 736
DpnI GATC 6 cut(s) 242, 281, 675, 708, 857, 983
DpnII GATC 6 cut(s) 240, 279, 673, 706, 855, 981
DrdI GACNNNNNNGTC 1 cut(s) 446
DseDI GACNNNNNNGTC 1 cut(s) 446
EaeI YGGCCR 2 cut(s) 513, 757
EciI GGCGGA 1 cut(s) 161
Eco31I GGTCTC 1 cut(s) 893
Eco47I GGWCC 1 cut(s) 698
Eco47III AGCGCT 1 cut(s) 1128
Eco57I CTGAAG 1 cut(s) 911
Eco72I CACGTG 6 cut(s) 100, 133, 251, 402, 412, 600
EcoRII CCWGG 4 cut(s) 48, 143, 197, 510
EgeI GGCGCC 1 cut(s) 736
EheI GGCGCC 1 cut(s) 736
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 5 cut(s) 14, 307, 355, 549, 811
FaqI GGGAC 2 cut(s) 699, 928
FatI CATG 5 cut(s) 10, 303, 351, 545, 807
FauI CCCGC 2 cut(s) 577, 904
FblI GTMKAC 3 cut(s) 618, 999, 1093
Fnu4HI GCNGC 4 cut(s) 591, 760, 869, 931
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 4 cut(s) 591, 760, 869, 931
GlaI GCGC 7 cut(s) 154, 434, 453, 542, 736, 910, 1128
GluI GCNGC 4 cut(s) 591, 760, 869, 931
GsuI CTGGAG 1 cut(s) 19
HaeII RGCGCY 2 cut(s) 738, 1130
HaeIII GGCC 4 cut(s) 86, 462, 515, 759
HapII CCGG 5 cut(s) 654, 744, 872, 971, 1097
HgaI GACGC 1 cut(s) 425
HhaI GCGC 7 cut(s) 155, 435, 454, 543, 737, 911, 1129
Hin1I GRCGYC 2 cut(s) 417, 735
Hin1II CATG 5 cut(s) 14, 307, 355, 549, 811
Hin6I GCGC 7 cut(s) 153, 433, 452, 541, 735, 909, 1127
HinP1I GCGC 7 cut(s) 153, 433, 452, 541, 735, 909, 1127
HincII GTYRAC 2 cut(s) 619, 1000
HindII GTYRAC 2 cut(s) 619, 1000
HinfI GANTC 3 cut(s) 584, 680, 747
HpaII CCGG 5 cut(s) 654, 744, 872, 971, 1097
HphI GGTGA 2 cut(s) 733, 1084
Hpy166II GTNNAC 7 cut(s) 415, 619, 698, 826, 1000, 1042, 1094
Hpy188I TCNGA 3 cut(s) 24, 326, 785
Hpy188III TCNNGA 2 cut(s) 677, 716
Hpy8I GTNNAC 7 cut(s) 415, 619, 698, 826, 1000, 1042, 1094
Hpy99I CGWCG 7 cut(s) 479, 521, 620, 623, 1004, 1007, 1049
HpyAV CCTTC 4 cut(s) 119, 385, 679, 886
HpyCH4III ACNGT 2 cut(s) 727, 919
HpyCH4V TGCA 8 cut(s) 10, 558, 846, 933, 955, 1011, 1060, 1105
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 976
HpyF3I CTNAG 1 cut(s) 79
Hsp92I GRCGYC 2 cut(s) 417, 735
Hsp92II CATG 5 cut(s) 14, 307, 355, 549, 811
HspAI GCGC 7 cut(s) 153, 433, 452, 541, 735, 909, 1127
KasI GGCGCC 1 cut(s) 734
KroI GCCGGC 1 cut(s) 871
KroNI GCCGGC 1 cut(s) 873
Kzo9I GATC 6 cut(s) 240, 279, 673, 706, 855, 981
LmnI GCTCC 6 cut(s) 64, 335, 538, 976, 1020, 1124
Lsp1109I GCAGC 2 cut(s) 577, 917
LweI GCATC 3 cut(s) 48, 317, 855
MaeIII GTNAC 4 cut(s) 128, 637, 739, 1072
MalI GATC 6 cut(s) 242, 281, 675, 708, 857, 983
MboI GATC 6 cut(s) 240, 279, 673, 706, 855, 981
MboII GAAGA 2 cut(s) 56, 65
MluCI AATT 4 cut(s) 18, 368, 522, 796
Mly113I GGCGCC 1 cut(s) 735
MlyI GAGTC 1 cut(s) 578
MmeI TCCRAC 2 cut(s) 47, 763
MreI CGCCGGCG 1 cut(s) 871
MroNI GCCGGC 1 cut(s) 871
MslI CAYNNNNRTG 2 cut(s) 812, 1055
MspI CCGG 5 cut(s) 654, 744, 872, 971, 1097
MspR9I CCNGG 4 cut(s) 50, 145, 199, 512
Mva1269I GAATGC 2 cut(s) 1036, 1062
MvaI CCWGG 4 cut(s) 50, 145, 199, 512
MvnI CGCG 3 cut(s) 153, 452, 911
MwoI GCNNNNNNNGC 2 cut(s) 272, 976
NaeI GCCGGC 1 cut(s) 873
NarI GGCGCC 1 cut(s) 735
NdeII GATC 6 cut(s) 240, 279, 673, 706, 855, 981
NgoMIV GCCGGC 1 cut(s) 871
NlaIII CATG 5 cut(s) 14, 307, 355, 549, 811
NlaIV GGNNCC 5 cut(s) 149, 407, 487, 736, 1051
NmeAIII GCCGAG 1 cut(s) 566
NmuCI GTSAC 4 cut(s) 128, 637, 739, 1072
NspI RCATGY 2 cut(s) 14, 355
NspV TTCGAA 1 cut(s) 1082
PaqCI CACCTGC 3 cut(s) 470, 497, 1002
PcsI WCGNNNNNNNCGW 3 cut(s) 279, 525, 618
PctI GAATGC 2 cut(s) 1036, 1062
PdiI GCCGGC 1 cut(s) 873
PfeI GAWTC 2 cut(s) 680, 747
PflMI CCANNNNNTGG 1 cut(s) 690
PfoI TCCNGGA 1 cut(s) 143
PinAI ACCGGT 1 cut(s) 653
PkrI GCNGC 4 cut(s) 592, 761, 870, 932
PleI GAGTC 1 cut(s) 578
PluTI GGCGCC 1 cut(s) 738
PmaCI CACGTG 6 cut(s) 100, 133, 251, 402, 412, 600
PmlI CACGTG 6 cut(s) 100, 133, 251, 402, 412, 600
PpsI GAGTC 1 cut(s) 578
Ppu21I YACGTR 8 cut(s) 100, 133, 251, 402, 412, 600, 637, 690
Psp6I CCWGG 4 cut(s) 48, 143, 197, 510
PspCI CACGTG 6 cut(s) 100, 133, 251, 402, 412, 600
PspGI CCWGG 4 cut(s) 48, 143, 197, 510
PspN4I GGNNCC 5 cut(s) 149, 407, 487, 736, 1051
PspPI GGNCC 2 cut(s) 460, 698
RsaI GTAC 2 cut(s) 635, 1116
RsaNI GTAC 2 cut(s) 634, 1115
RseI CAYNNNNRTG 2 cut(s) 812, 1055
SalI GTCGAC 2 cut(s) 617, 998
SatI GCNGC 4 cut(s) 591, 760, 869, 931
Sau3AI GATC 6 cut(s) 240, 279, 673, 706, 855, 981
Sau96I GGNCC 2 cut(s) 460, 698
SchI GAGTC 1 cut(s) 578
ScrFI CCNGG 4 cut(s) 50, 145, 199, 512
SfaNI GCATC 3 cut(s) 48, 317, 855
SfoI GGCGCC 1 cut(s) 736
SfuI TTCGAA 1 cut(s) 1082
SgrAI CRCCGGYG 1 cut(s) 871
SgrDI CGTCGACG 1 cut(s) 617
SinI GGWCC 1 cut(s) 698
SmiMI CAYNNNNRTG 2 cut(s) 812, 1055
SmlI CTYRAG 2 cut(s) 578, 839
SmoI CTYRAG 2 cut(s) 578, 839
Sse9I AATT 4 cut(s) 18, 368, 522, 796
SsiI CCGC 9 cut(s) 151, 172, 466, 570, 760, 779, 869, 911, 1034
SspDI GGCGCC 1 cut(s) 734
StyD4I CCNGG 4 cut(s) 48, 143, 197, 510
TaaI ACNGT 2 cut(s) 727, 919
TaqI TCGA 8 cut(s) 42, 282, 519, 618, 672, 923, 999, 1082
TaqII GACCGA 1 cut(s) 917
TasI AATT 4 cut(s) 18, 368, 522, 796
TauI GCSGC 2 cut(s) 762, 871
TfiI GAWTC 2 cut(s) 680, 747
TseFI GTSAC 4 cut(s) 128, 637, 739, 1072
TseI GCWGC 2 cut(s) 590, 930
Tsp45I GTSAC 4 cut(s) 128, 637, 739, 1072
TspDTI ATGAA 3 cut(s) 101, 320, 824
TspGWI ACGGA 2 cut(s) 84, 656
Van91I CCANNNNNTGG 1 cut(s) 690
VpaK11BI GGWCC 1 cut(s) 698
XapI RAATTY 4 cut(s) 18, 368, 522, 796
XceI RCATGY 2 cut(s) 14, 355
XmiI GTMKAC 3 cut(s) 618, 999, 1093
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.