Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002501.1

Orthogroup ID

OG0010437

Physical Location & Seq

Genomic Coordinates Reverse (-)

93704 .. 94855

Gene Structure 1152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002501.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

atggcagtaacggcgaaccctaagcagaaccagaccaaggcggcggttcaagaagaagcacagctctacggagacgtcttggagtccgtgctatccaaattacacctcatccatctcctatcggcgtgtcacgtctcaaagtcttggaaccgcgccgtttcgtctaccctccgtttctctaaccgagttaaaccctggctcgttgtccacactcagaccaccaggttcccctacgtcgtctccgcacgtgcttacgacacggcctcgcacgtgtgggtagacctagaacggagtcctccggtcaagtccatctccaccctccgctcctctcactcgactcttctctacatgctttccccttccaaattcgctttctccctggacgcgctccacctagagtggagtcacgcaaatacgcctccgctcgtgtggcgaactgacccgattgtcgccgtggtgggccaccgcgtagtcgtcgcaggaggcgcgtgcgactacgaggacgacccgctggccgtggaaatgtacgatgtcaaagttggcacgtgggacacgtgcgagtccatgcccgccattttcaaagactcttcggcgtccacgtggctgtctgtggccgcggacgagaggagaatgtacgtgacggagaggtgctcggctgtcacgtactcgtttgatccggagtccaagaagtggtttgggccgtacgatctgcgtccgaatccgacggtgtttagctccgtgattggattcgttaacgggcgtttggttttggcgggagttgtgggagcggcggaggacgtgaagggagtgaagttgtgggaagtggaagtcagcgacgacgagtcgttggagttgaaagagatgatcggtgacatgccggagacaatggtggagaagttgaagggcgagagagactgtgagccgtcgttttcgatgagctatatgggaggtatggtgtgttttcacaacggttccgacccgagcgagttgatcctctgcgagctggataatggggggtgcaggtggacgagcataaggaatgatgccgtgaacgacgggacccgcatgcagaggatggtggtgacgtgtgccaatctggggttgccggagttgcagaaagccgtacaagtcggagcactgaaaattctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1 Kelch_6

Protein Analysis

383

Amino Acids

42.43

Weight (kDa)

5.52

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23390
fragaria_vesca	FvH4_4g32970
malus_domestica	MD13G1095300.v1.1 MD13G1280300.v1.1 MD16G1096400.v1.1 MD16G1096500.v1.1
prunus_persica	Prupe.1G249900_v2.0.a1
pyrus_communis	pycom13g08310 pycom16g08240 pycom16g08250
rosa_chinensis	RchiOBHm_Chr4g0441991
rosa_laevigata	RLG00000006052
rosa_multiflora	Rmu_sc0002501.1_g000021 Rmu_sc0011990.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382880
rosa_rugosa	Rorug04G0337600
rosa_samantha	Rh4AG389600 Rh4BG403000 Rh4CG418200 Rh4DG396200
rosa_wichuraiana	Rw4G033660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1011
AasI	GACNNNNNNGTC	1 cut(s)	446
AatII	GACGTC	1 cut(s)	78
Acc36I	ACCTGC	1 cut(s)	1011
AccB7I	CCANNNNNTGG	1 cut(s)	690
AccBSI	CCGCTC	3 cut(s)	324, 424, 788
AccI	GTMKAC	2 cut(s)	164, 279
AccII	CGCG	5 cut(s)	153, 386, 468, 488, 617
AccIII	TCCGGA	1 cut(s)	676
AclWI	GGATC	2 cut(s)	668, 985
AcoI	YGGCCR	2 cut(s)	513, 612
AcsI	RAATTY	2 cut(s)	365, 1143
AcvI	CACGTG	5 cut(s)	248, 271, 546, 555, 600
AcyI	GRCGYC	2 cut(s)	75, 593
AfaI	GTAC	5 cut(s)	527, 635, 665, 704, 1125
AfiI	CCNNNNNNNGG	3 cut(s)	37, 690, 1098
AflIII	ACRYGT	3 cut(s)	270, 552, 1085
AgsI	TTSAA	4 cut(s)	50, 580, 856, 901
AhdI	GACNNNNNGTC	1 cut(s)	841
AjiI	CACGTC	3 cut(s)	133, 799, 1086
AjnI	CCWGG	3 cut(s)	194, 221, 378
AjuI	GAANNNNNNNTTGG	2 cut(s)	356, 388
AluBI	AGCT	4 cut(s)	64, 735, 939, 1003
AluI	AGCT	4 cut(s)	64, 735, 939, 1003
Alw21I	GWGCWC	2 cut(s)	653, 1138
Alw26I	GTCTC	5 cut(s)	66, 139, 244, 875, 906
AlwI	GGATC	2 cut(s)	668, 985
Ama87I	CYCGRG	1 cut(s)	979
Aor13HI	TCCGGA	1 cut(s)	676
AoxI	GGCC	5 cut(s)	261, 460, 513, 612, 698
ApoI	RAATTY	2 cut(s)	365, 1143
AspLEI	GCGC	3 cut(s)	155, 388, 488
AspS9I	GGNCC	3 cut(s)	460, 698, 1059
AsuHPI	GGTGA	2 cut(s)	881, 1093
AvaI	CYCGRG	1 cut(s)	979
AvaII	GGWCC	1 cut(s)	1059
BauI	CACGAG	1 cut(s)	425
BbrPI	CACGTG	5 cut(s)	248, 271, 546, 555, 600
Bbv12I	GWGCWC	2 cut(s)	653, 1138
BccI	CCATC	3 cut(s)	120, 317, 1069
BceAI	ACGGC	9 cut(s)	27, 140, 276, 437, 500, 685, 907, 1031, 1106
BciT130I	CCWGG	3 cut(s)	196, 223, 380
BcoDI	GTCTC	5 cut(s)	66, 139, 244, 875, 906
BfaI	CTAG	2 cut(s)	284, 395
BfuAI	ACCTGC	1 cut(s)	1011
BisI	GCNGC	3 cut(s)	42, 615, 789
BlsI	GCNGC	3 cut(s)	43, 616, 790
Bme1390I	CCNGG	3 cut(s)	196, 223, 380
Bme18I	GGWCC	1 cut(s)	1059
BmeRI	GACNNNNNGTC	1 cut(s)	841
BmeT110I	CYCGRG	1 cut(s)	979
BmgBI	CACGTC	3 cut(s)	133, 799, 1086
BmgT120I	GGNCC	3 cut(s)	460, 698, 1059
BmiI	GGNNCC	5 cut(s)	149, 227, 973, 1060, 1061
BmrFI	CCNGG	3 cut(s)	196, 223, 380
BmsI	GCATC	1 cut(s)	1033
BplI	GAGNNNNNCTC	2 cut(s)	635, 667
Bpu10I	CCTNAGC	1 cut(s)	21
BsaAI	YACGTR	7 cut(s)	248, 271, 546, 555, 600, 637, 663
BsaHI	GRCGYC	2 cut(s)	75, 593
BsaJI	CCNNGG	6 cut(s)	36, 194, 378, 453, 516, 615
BsaWI	WCCGGW	2 cut(s)	298, 676
BsaXI	ACNNNNNCTCC	4 cut(s)	224, 254, 939, 969
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 690, 1098
BseAI	TCCGGA	1 cut(s)	676
BseBI	CCWGG	3 cut(s)	196, 223, 380
BseDI	CCNNGG	6 cut(s)	36, 194, 378, 453, 516, 615
BseGI	GGATG	2 cut(s)	108, 1080
BseLI	CCNNNNNNNGG	3 cut(s)	37, 690, 1098
BseMII	CTCAG	1 cut(s)	227
BseRI	GAGGAG	2 cut(s)	316, 640
BsgI	GTGCAG	1 cut(s)	1039
Bsh1236I	CGCG	5 cut(s)	153, 386, 468, 488, 617
BshFI	GGCC	5 cut(s)	263, 462, 515, 614, 700
BsiHKAI	GWGCWC	2 cut(s)	653, 1138
BsiHKCI	CYCGRG	1 cut(s)	979
BsiSI	CCGG	4 cut(s)	299, 677, 878, 1106
BsiWI	CGTACG	1 cut(s)	702
BslFI	GGGAC	2 cut(s)	563, 1072
BslI	CCNNNNNNNGG	3 cut(s)	37, 690, 1098
BsmAI	GTCTC	5 cut(s)	66, 139, 244, 875, 906
BsmBI	CGTCTC	3 cut(s)	66, 139, 244
BsmFI	GGGAC	2 cut(s)	563, 1072
BsnI	GGCC	5 cut(s)	263, 462, 515, 614, 700
BsoBI	CYCGRG	1 cut(s)	979
Bsp1286I	GDGCHC	2 cut(s)	653, 1138
Bsp13I	TCCGGA	1 cut(s)	676
Bsp143I	GATC	4 cut(s)	673, 706, 864, 990
BspANI	GGCC	5 cut(s)	263, 462, 515, 614, 700
BspCNI	CTCAG	1 cut(s)	226
BspEI	TCCGGA	1 cut(s)	676
BspFNI	CGCG	5 cut(s)	153, 386, 468, 488, 617
BspLI	GGNNCC	5 cut(s)	149, 227, 973, 1060, 1061
BspMI	ACCTGC	1 cut(s)	1011
BspPI	GGATC	2 cut(s)	668, 985
BsrBI	CCGCTC	3 cut(s)	324, 424, 788
BssECI	CCNNGG	6 cut(s)	36, 194, 378, 453, 516, 615
BssMI	GATC	4 cut(s)	673, 706, 864, 990
BssNI	GRCGYC	2 cut(s)	75, 593
BssSI	CACGAG	1 cut(s)	425
BssT1I	CCWWGG	1 cut(s)	36
Bst2BI	CACGAG	1 cut(s)	425
Bst2UI	CCWGG	3 cut(s)	196, 223, 380
Bst4CI	ACNGT	3 cut(s)	727, 917, 971
Bst6I	CTCTTC	2 cut(s)	345, 592
BstACI	GRCGYC	2 cut(s)	75, 593
BstBAI	YACGTR	7 cut(s)	248, 271, 546, 555, 600, 637, 663
BstC8I	GCNNGC	5 cut(s)	490, 513, 570, 1001, 1067
BstDEI	CTNAG	2 cut(s)	21, 213
BstDSI	CCRYGG	3 cut(s)	453, 516, 615
BstF5I	GGATG	2 cut(s)	108, 1080
BstFNI	CGCG	5 cut(s)	153, 386, 468, 488, 617
BstHHI	GCGC	3 cut(s)	155, 388, 488
BstKTI	GATC	4 cut(s)	676, 709, 867, 993
BstMAI	GTCTC	5 cut(s)	66, 139, 244, 875, 906
BstMBI	GATC	4 cut(s)	673, 706, 864, 990
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 430, 485, 1111
BstNI	CCWGG	3 cut(s)	196, 223, 380
BstNSI	RCATGY	3 cut(s)	352, 877, 1069
BstSCI	CCNGG	3 cut(s)	194, 221, 378
BstUI	CGCG	5 cut(s)	153, 386, 468, 488, 617
BsuRI	GGCC	5 cut(s)	263, 462, 515, 614, 700
BtgI	CCRYGG	3 cut(s)	453, 516, 615
BtrI	CACGTC	3 cut(s)	133, 799, 1086
BtsCI	GGATG	2 cut(s)	108, 1080
BtsIMutI	CAGTG	1 cut(s)	1136
BveI	ACCTGC	1 cut(s)	1011
Cac8I	GCNNGC	5 cut(s)	490, 513, 570, 1001, 1067
CfoI	GCGC	3 cut(s)	155, 388, 488
Cfr13I	GGNCC	3 cut(s)	460, 698, 1059
Cfr42I	CCGCGG	1 cut(s)	618
CseI	GACGC	3 cut(s)	392, 582, 701
CsiI	ACCWGGT	1 cut(s)	221
Csp6I	GTAC	5 cut(s)	526, 634, 664, 703, 1124
CviAII	CATG	4 cut(s)	349, 565, 874, 1066
CviQI	GTAC	5 cut(s)	526, 634, 664, 703, 1124
DdeI	CTNAG	2 cut(s)	21, 213
DpnI	GATC	4 cut(s)	675, 708, 866, 992
DpnII	GATC	4 cut(s)	673, 706, 864, 990
DrdI	GACNNNNNNGTC	1 cut(s)	446
DriI	GACNNNNNGTC	1 cut(s)	841
DseDI	GACNNNNNNGTC	1 cut(s)	446
EaeI	YGGCCR	2 cut(s)	513, 612
Eam1104I	CTCTTC	2 cut(s)	345, 592
Eam1105I	GACNNNNNGTC	1 cut(s)	841
EarI	CTCTTC	2 cut(s)	345, 592
EciI	GGCGGA	1 cut(s)	806
Eco130I	CCWWGG	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	1059
Eco72I	CACGTG	5 cut(s)	248, 271, 546, 555, 600
Eco88I	CYCGRG	1 cut(s)	979
EcoO109I	RGGNCCY	1 cut(s)	1059
EcoRII	CCWGG	3 cut(s)	194, 221, 378
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
Esp3I	CGTCTC	3 cut(s)	66, 139, 244
FaeI	CATG	4 cut(s)	352, 568, 877, 1069
FaiI	YATR	9 cut(s)	350, 566, 875, 942, 944, 953, 1034, 1067, 1150
FaqI	GGGAC	2 cut(s)	563, 1072
FatI	CATG	4 cut(s)	348, 564, 873, 1065
FauI	CCCGC	4 cut(s)	516, 577, 766, 1070
FblI	GTMKAC	2 cut(s)	164, 279
Fnu4HI	GCNGC	3 cut(s)	42, 615, 789
FokI	GGATG	2 cut(s)	95, 1087
Fsp4HI	GCNGC	3 cut(s)	42, 615, 789
FspBI	CTAG	2 cut(s)	284, 395
GlaI	GCGC	3 cut(s)	154, 387, 487
GluI	GCNGC	3 cut(s)	42, 615, 789
HaeIII	GGCC	5 cut(s)	263, 462, 515, 614, 700
HapII	CCGG	4 cut(s)	299, 677, 878, 1106
HgaI	GACGC	3 cut(s)	392, 582, 701
HhaI	GCGC	3 cut(s)	155, 388, 488
Hin1I	GRCGYC	2 cut(s)	75, 593
Hin1II	CATG	4 cut(s)	352, 568, 877, 1069
Hin6I	GCGC	3 cut(s)	153, 386, 486
HinP1I	GCGC	3 cut(s)	153, 386, 486
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HpaI	GTTAAC	1 cut(s)	754
HpaII	CCGG	4 cut(s)	299, 677, 878, 1106
HphI	GGTGA	2 cut(s)	881, 1093
Hpy166II	GTNNAC	7 cut(s)	165, 208, 280, 597, 754, 1026, 1051
Hpy188I	TCNGA	5 cut(s)	216, 717, 723, 976, 1133
Hpy188III	TCNNGA	2 cut(s)	50, 677
Hpy8I	GTNNAC	7 cut(s)	165, 208, 280, 597, 754, 1026, 1051
Hpy99I	CGWCG	7 cut(s)	239, 479, 727, 839, 842, 928, 1058
HpyAV	CCTTC	3 cut(s)	369, 796, 895
HpyCH4III	ACNGT	3 cut(s)	727, 917, 971
HpyCH4V	TGCA	3 cut(s)	1020, 1069, 1114
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 430, 485, 1111
HpyF3I	CTNAG	2 cut(s)	21, 213
Hsp92I	GRCGYC	2 cut(s)	75, 593
Hsp92II	CATG	4 cut(s)	352, 568, 877, 1069
HspAI	GCGC	3 cut(s)	153, 386, 486
KflI	GGGWCCC	1 cut(s)	1059
Kpn2I	TCCGGA	1 cut(s)	676
KspAI	GTTAAC	1 cut(s)	754
KspI	CCGCGG	1 cut(s)	618
Kzo9I	GATC	4 cut(s)	673, 706, 864, 990
LmnI	GCTCC	5 cut(s)	329, 393, 740, 785, 1133
LweI	GCATC	1 cut(s)	1033
MabI	ACCWGGT	1 cut(s)	221
MaeI	CTAG	2 cut(s)	284, 395
MaeIII	GTNAC	7 cut(s)	7, 128, 404, 637, 658, 869, 1081
MalI	GATC	4 cut(s)	675, 708, 866, 992
MbiI	CCGCTC	3 cut(s)	324, 424, 788
MboI	GATC	4 cut(s)	673, 706, 864, 990
MboII	GAAGA	3 cut(s)	65, 332, 579
MhlI	GDGCHC	2 cut(s)	653, 1138
MluCI	AATT	3 cut(s)	98, 365, 1143
MlyI	GAGTC	8 cut(s)	92, 301, 331, 412, 569, 578, 689, 851
MmeI	TCCRAC	4 cut(s)	746, 828, 999, 1111
MroI	TCCGGA	1 cut(s)	676
MseI	TTAA	2 cut(s)	189, 753
MspA1I	CMGCKG	2 cut(s)	511, 617
MspI	CCGG	4 cut(s)	299, 677, 878, 1106
MspR9I	CCNGG	3 cut(s)	196, 223, 380
MvaI	CCWGG	3 cut(s)	196, 223, 380
MvnI	CGCG	5 cut(s)	153, 386, 468, 488, 617
MwoI	GCNNNNNNNGC	4 cut(s)	11, 430, 485, 1111
NdeII	GATC	4 cut(s)	673, 706, 864, 990
NlaIII	CATG	4 cut(s)	352, 568, 877, 1069
NlaIV	GGNNCC	5 cut(s)	149, 227, 973, 1060, 1061
NmeAIII	GCCGAG	1 cut(s)	632
NmuCI	GTSAC	6 cut(s)	128, 404, 637, 658, 869, 1081
NspI	RCATGY	3 cut(s)	352, 877, 1069
PaeI	GCATGC	1 cut(s)	1069
PaqCI	CACCTGC	1 cut(s)	1011
PcsI	WCGNNNNNNNCGW	3 cut(s)	551, 596, 659
PfeI	GAWTC	2 cut(s)	718, 747
Pfl23II	CGTACG	1 cut(s)	702
PflMI	CCANNNNNTGG	1 cut(s)	690
PkrI	GCNGC	3 cut(s)	43, 616, 790
PleI	GAGTC	8 cut(s)	91, 300, 331, 411, 568, 578, 688, 850
PmaCI	CACGTG	5 cut(s)	248, 271, 546, 555, 600
PmlI	CACGTG	5 cut(s)	248, 271, 546, 555, 600
PpsI	GAGTC	8 cut(s)	91, 300, 331, 411, 568, 578, 688, 850
Ppu21I	YACGTR	7 cut(s)	248, 271, 546, 555, 600, 637, 663
PpuMI	RGGWCCY	1 cut(s)	1059
Psp5II	RGGWCCY	1 cut(s)	1059
Psp6I	CCWGG	3 cut(s)	194, 221, 378
PspCI	CACGTG	5 cut(s)	248, 271, 546, 555, 600
PspGI	CCWGG	3 cut(s)	194, 221, 378
PspLI	CGTACG	1 cut(s)	702
PspN4I	GGNNCC	5 cut(s)	149, 227, 973, 1060, 1061
PspPI	GGNCC	3 cut(s)	460, 698, 1059
PspPPI	RGGWCCY	1 cut(s)	1059
RsaI	GTAC	5 cut(s)	527, 635, 665, 704, 1125
RsaNI	GTAC	5 cut(s)	526, 634, 664, 703, 1124
SacII	CCGCGG	1 cut(s)	618
SaqAI	TTAA	2 cut(s)	189, 753
SatI	GCNGC	3 cut(s)	42, 615, 789
Sau3AI	GATC	4 cut(s)	673, 706, 864, 990
Sau96I	GGNCC	3 cut(s)	460, 698, 1059
SchI	GAGTC	8 cut(s)	92, 301, 331, 412, 569, 578, 689, 851
ScrFI	CCNGG	3 cut(s)	196, 223, 380
SduI	GDGCHC	2 cut(s)	653, 1138
SexAI	ACCWGGT	1 cut(s)	221
SfaNI	GCATC	1 cut(s)	1033
Sfr303I	CCGCGG	1 cut(s)	618
SgrBI	CCGCGG	1 cut(s)	618
SinI	GGWCC	1 cut(s)	1059
SphI	GCATGC	1 cut(s)	1069
Sse9I	AATT	3 cut(s)	98, 365, 1143
SspMI	CTAG	2 cut(s)	284, 395
StyD4I	CCNGG	3 cut(s)	194, 221, 378
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	3 cut(s)	727, 917, 971
TaqI	TCGA	2 cut(s)	335, 932
TasI	AATT	3 cut(s)	98, 365, 1143
TauI	GCSGC	3 cut(s)	44, 617, 791
TfiI	GAWTC	2 cut(s)	718, 747
Tru1I	TTAA	2 cut(s)	189, 753
Tru9I	TTAA	2 cut(s)	189, 753
TscAI	CASTG	1 cut(s)	1143
TseFI	GTSAC	6 cut(s)	128, 404, 637, 658, 869, 1081
Tsp45I	GTSAC	6 cut(s)	128, 404, 637, 658, 869, 1081
TspGWI	ACGGA	6 cut(s)	76, 84, 161, 304, 656, 727
TspRI	CASTG	1 cut(s)	1143
Van91I	CCANNNNNTGG	1 cut(s)	690
VpaK11BI	GGWCC	1 cut(s)	1059
XapI	RAATTY	2 cut(s)	365, 1143
XceI	RCATGY	3 cut(s)	352, 877, 1069
XmiI	GTMKAC	2 cut(s)	164, 279
XspI	CTAG	2 cut(s)	284, 395
ZraI	GACGTC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.