pycom13g08310

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
5511285 .. 5512986
1702 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g08310.2

Sequence Viewer

Length: 1350 bp
ATGTGGTTGGTTGGTGGTGAAGCCCCAAAATGGACGGCGTGGATTATTCTCTTATTGTTTGTTTTTATTTCTTCACCAATATCTAGTCGCGGTCAGATTATATCCACTTCACGCTCCCTATATAAAGGTCCGGCCACGCACAGCTTTCCCACTCAAACAAATCATCTCCCTCTTTCTCCTTCTTTTCTCTCTCTAAAACAATTAGCAATGGCGTTGCATGTTCAAATTCCGACCAAAATCTCCAGCATCGAAGACCAGGAAGAAGCTCCACTCTACGGAGACGTCCTAGAGGCCATACTCTACCACGTGCCTCTCCTTTACCTCGTTCCTGCCTGTCACGTGTCCAAGTCCTGGAACCGCGCCGTCTCCTCCTCCCTCCGCCACCTCAACCGAAACGTCAAGCCCTGGCTCATTGTCCTAGCCCAAACGATCAGGTCTCCCTACAAGATCAACGCACGTGCCTACGACCCTGCCTCGCACGCTTGGATCGACATCCACTTTCAGCCGTCCATGAAATCCATCTCCACCCTCCGATCCTCCCACTCCACGCTCCTCTACATGCTGTCTCCCTCCAAATTCGCCTTCTCAACCGACCCCCTCCACCACACGTGGAACCACGTGGACGCCCCGTTGGTCTGGCGCACCGACCCGATTGTCGCGCTGGTGGGCCACCGCATAGTCGTCGCAGGCGGCACCTGCGATTACGAGGACGACCCCCTGGCCGTCGAAATTTACGACACGAGGGAGCGCACATGGGGAACGTGCAACTCAATGCCCGCTATCCTCAAGGACTCTGCTGCCTCCACGTGGCTCTCGGTCGCCGTTGACGACAGCAAACTGTACGTGACGGATAAAAACACCGGTTTGACCTACACCTTCGATCCCGATTCCAAGACGTGGTGTGGACCGTACGATCTGTGTCCCGACAGAACGGTGTTCGGGGCCGTGACGGGATTCGCTGATGGCCGCTTTATTTTGGTGGAGGCGGTCGGAAGCGCGGGGAATTTGAAAACCATGAAAGTGTGGGAAGTGAACGGGGTGTCGCTTGAGTGCAAAACGTTGATCGGGGAGATGCCGCCGGCGATGGTGGAGAAGCTGAAGGGCGAGACAGACTGCGCGGGGACGGTTTCGATGAGCTGCACGAGAGATATGGTGTGCCTGCATAACACTTGGTCGCCGGAGGAGCTGATCCTCTGCGAGCTTGTCGACGGCGGGTGCAGGTGGGGGAGCGTAGGGAATGCGGTTGTGAACGACGGCACCCGAATGCAGAAGTTGGTGGTGAAGTGTTCGAATGTTGGTCTACCGGATTTGCATAAAGCCGTACAACTTGGAGCGCTGAAAGTGGTTTGA

Protein Analysis

450

Amino Acids

49.47

Weight (kDa)

6.56

Isoelectric Point (pI)

41.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 704, 1209
AasI GACNNNNNNGTC 1 cut(s) 653
AatII GACGTC 1 cut(s) 285
Acc36I ACCTGC 2 cut(s) 704, 1209
AccB1I GGYRCC 2 cut(s) 692, 1256
AccB7I CCANNNNNTGG 2 cut(s) 351, 897
AccI GTMKAC 2 cut(s) 1206, 1300
AccII CGCG 5 cut(s) 90, 360, 659, 998, 1118
AclI AACGTT 1 cut(s) 1058
AclWI GGATC 4 cut(s) 494, 528, 875, 1183
AcoI YGGCCR 3 cut(s) 132, 720, 964
AcsI RAATTY 4 cut(s) 225, 575, 729, 1003
AcuI CTGAAG 1 cut(s) 1118
AcvI CACGTG 6 cut(s) 307, 340, 458, 609, 619, 807
AcyI GRCGYC 2 cut(s) 282, 624
AfaI GTAC 3 cut(s) 842, 911, 1323
AfeI AGCGCT 1 cut(s) 1335
AfiI CCNNNNNNNGG 5 cut(s) 30, 275, 351, 807, 897
AflIII ACRYGT 2 cut(s) 339, 606
AgeI ACCGGT 1 cut(s) 860
AgsI TTSAA 2 cut(s) 224, 1009
AjiI CACGTC 1 cut(s) 897
AjnI CCWGG 4 cut(s) 255, 350, 404, 717
AjuI GAANNNNNNNTTGG 2 cut(s) 566, 598
AluBI AGCT 6 cut(s) 144, 266, 1096, 1137, 1186, 1201
AluI AGCT 6 cut(s) 144, 266, 1096, 1137, 1186, 1201
Alw26I GTCTC 5 cut(s) 273, 370, 441, 570, 1100
AlwI GGATC 4 cut(s) 494, 528, 875, 1183
Aor51HI AGCGCT 1 cut(s) 1335
AoxI GGCC 6 cut(s) 132, 291, 667, 720, 942, 964
ApeKI GCWGC 2 cut(s) 797, 1137
ApoI RAATTY 4 cut(s) 225, 575, 729, 1003
AsiGI ACCGGT 1 cut(s) 860
AspLEI GCGC 7 cut(s) 362, 642, 661, 750, 998, 1118, 1336
AspS9I GGNCC 4 cut(s) 128, 667, 905, 942
AsuHPI GGTGA 3 cut(s) 29, 66, 1291
AsuII TTCGAA 1 cut(s) 1289
AvaII GGWCC 2 cut(s) 128, 905
BanI GGYRCC 2 cut(s) 692, 1256
BauI CACGAG 2 cut(s) 739, 1141
BbrPI CACGTG 6 cut(s) 307, 340, 458, 609, 619, 807
BbsI GAAGAC 1 cut(s) 258
BbvI GCAGC 2 cut(s) 784, 1124
BccI CCATC 3 cut(s) 527, 956, 1078
BceAI ACGGC 9 cut(s) 51, 347, 490, 707, 806, 929, 1225, 1270, 1304
BcgI CGANNNNNNTGC 2 cut(s) 664, 698
BciT130I CCWGG 4 cut(s) 257, 352, 406, 719
BcoDI GTCTC 5 cut(s) 273, 370, 441, 570, 1100
BfaI CTAG 3 cut(s) 84, 287, 419
BfoI RGCGCY 1 cut(s) 1337
BfuAI ACCTGC 2 cut(s) 704, 1209
BisI GCNGC 5 cut(s) 691, 798, 967, 1076, 1138
BlsI GCNGC 5 cut(s) 692, 799, 968, 1077, 1139
Bme1390I CCNGG 4 cut(s) 257, 352, 406, 719
Bme18I GGWCC 2 cut(s) 128, 905
BmgBI CACGTC 1 cut(s) 897
BmgT120I GGNCC 4 cut(s) 128, 667, 905, 942
BmiI GGNNCC 5 cut(s) 356, 614, 694, 943, 1258
BmrFI CCNGG 4 cut(s) 257, 352, 406, 719
BmsI GCATC 2 cut(s) 255, 1062
BpiI GAAGAC 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 226
Bpu14I TTCGAA 1 cut(s) 1289
BpuEI CTTGAG 2 cut(s) 770, 1067
BsaAI YACGTR 7 cut(s) 307, 340, 458, 609, 619, 807, 844
BsaBI GATNNNNATC 1 cut(s) 491
BsaHI GRCGYC 2 cut(s) 282, 624
BsaI GGTCTC 1 cut(s) 441
BsaJI CCNNGG 2 cut(s) 404, 717
BsaWI WCCGGW 2 cut(s) 860, 1303
Bsc4I CCNNNNNNNGG 5 cut(s) 30, 275, 351, 807, 897
Bse118I RCCGGY 2 cut(s) 860, 1078
Bse3DI GCAATG 1 cut(s) 213
Bse8I GATNNNNATC 1 cut(s) 491
BseBI CCWGG 4 cut(s) 257, 352, 406, 719
BseDI CCNNGG 2 cut(s) 404, 717
BseGI GGATG 1 cut(s) 492
BseJI GATNNNNATC 1 cut(s) 491
BseLI CCNNNNNNNGG 5 cut(s) 30, 275, 351, 807, 897
BseMI GCAATG 1 cut(s) 213
BseRI GAGGAG 4 cut(s) 358, 361, 542, 1196
BseXI GCAGC 2 cut(s) 784, 1124
BsgI GTGCAG 2 cut(s) 1123, 1237
Bsh1236I CGCG 5 cut(s) 90, 360, 659, 998, 1118
Bsh1285I CGRYCG 2 cut(s) 819, 990
BshFI GGCC 6 cut(s) 134, 293, 669, 722, 944, 966
BshNI GGYRCC 2 cut(s) 692, 1256
BshTI ACCGGT 1 cut(s) 860
BsiEI CGRYCG 2 cut(s) 819, 990
BsiSI CCGG 5 cut(s) 131, 861, 1079, 1178, 1304
BsiWI CGTACG 1 cut(s) 909
BslFI GGGAC 2 cut(s) 906, 1135
BslI CCNNNNNNNGG 5 cut(s) 30, 275, 351, 807, 897
BsmAI GTCTC 5 cut(s) 273, 370, 441, 570, 1100
BsmBI CGTCTC 2 cut(s) 273, 370
BsmFI GGGAC 2 cut(s) 906, 1135
BsmI GAATGC 2 cut(s) 1243, 1269
BsnI GGCC 6 cut(s) 134, 293, 669, 722, 944, 966
Bso31I GGTCTC 1 cut(s) 441
Bsp119I TTCGAA 1 cut(s) 1289
Bsp143I GATC 8 cut(s) 429, 447, 486, 533, 880, 913, 1062, 1188
BspANI GGCC 6 cut(s) 134, 293, 669, 722, 944, 966
BspFNI CGCG 5 cut(s) 90, 360, 659, 998, 1118
BspLI GGNNCC 5 cut(s) 356, 614, 694, 943, 1258
BspMI ACCTGC 2 cut(s) 704, 1209
BspPI GGATC 4 cut(s) 494, 528, 875, 1183
BspT104I TTCGAA 1 cut(s) 1289
BspT107I GGYRCC 2 cut(s) 692, 1256
BspTNI GGTCTC 1 cut(s) 441
BsrDI GCAATG 1 cut(s) 213
BsrFI RCCGGY 2 cut(s) 860, 1078
BssAI RCCGGY 2 cut(s) 860, 1078
BssECI CCNNGG 2 cut(s) 404, 717
BssMI GATC 8 cut(s) 429, 447, 486, 533, 880, 913, 1062, 1188
BssNI GRCGYC 2 cut(s) 282, 624
BssSI CACGAG 2 cut(s) 739, 1141
Bst2BI CACGAG 2 cut(s) 739, 1141
Bst2UI CCWGG 4 cut(s) 257, 352, 406, 719
Bst4CI ACNGT 4 cut(s) 840, 909, 934, 1126
BstACI GRCGYC 2 cut(s) 282, 624
BstBAI YACGTR 7 cut(s) 307, 340, 458, 609, 619, 807, 844
BstBI TTCGAA 1 cut(s) 1289
BstC8I GCNNGC 6 cut(s) 480, 688, 777, 1080, 1160, 1199
BstF5I GGATG 1 cut(s) 492
BstFNI CGCG 5 cut(s) 90, 360, 659, 998, 1118
BstH2I RGCGCY 1 cut(s) 1337
BstHHI GCGC 7 cut(s) 362, 642, 661, 750, 998, 1118, 1336
BstKTI GATC 8 cut(s) 432, 450, 489, 536, 883, 916, 1065, 1191
BstMAI GTCTC 5 cut(s) 273, 370, 441, 570, 1100
BstMBI GATC 8 cut(s) 429, 447, 486, 533, 880, 913, 1062, 1188
BstMCI CGRYCG 2 cut(s) 819, 990
BstMWI GCNNNNNNNGC 3 cut(s) 479, 696, 1183
BstNI CCWGG 4 cut(s) 257, 352, 406, 719
BstNSI RCATGY 2 cut(s) 221, 562
BstSCI CCNGG 4 cut(s) 255, 350, 404, 717
BstUI CGCG 5 cut(s) 90, 360, 659, 998, 1118
BstV1I GCAGC 2 cut(s) 784, 1124
BstV2I GAAGAC 1 cut(s) 258
BsuRI GGCC 6 cut(s) 134, 293, 669, 722, 944, 966
BtgZI GCGATG 1 cut(s) 1097
BtrI CACGTC 1 cut(s) 897
BtsCI GGATG 1 cut(s) 492
BveI ACCTGC 2 cut(s) 704, 1209
Cac8I GCNNGC 6 cut(s) 480, 688, 777, 1080, 1160, 1199
CfoI GCGC 7 cut(s) 362, 642, 661, 750, 998, 1118, 1336
Cfr10I RCCGGY 2 cut(s) 860, 1078
Cfr13I GGNCC 4 cut(s) 128, 667, 905, 942
CseI GACGC 1 cut(s) 632
Csp6I GTAC 3 cut(s) 841, 910, 1322
CspAI ACCGGT 1 cut(s) 860
CviAII CATG 5 cut(s) 218, 511, 559, 753, 1015
CviQI GTAC 3 cut(s) 841, 910, 1322
DpnI GATC 8 cut(s) 431, 449, 488, 535, 882, 915, 1064, 1190
DpnII GATC 8 cut(s) 429, 447, 486, 533, 880, 913, 1062, 1188
DrdI GACNNNNNNGTC 1 cut(s) 653
DseDI GACNNNNNNGTC 1 cut(s) 653
EaeI YGGCCR 3 cut(s) 132, 720, 964
EciI GGCGGA 1 cut(s) 368
Eco31I GGTCTC 1 cut(s) 441
Eco47I GGWCC 2 cut(s) 128, 905
Eco47III AGCGCT 1 cut(s) 1335
Eco57I CTGAAG 1 cut(s) 1118
Eco72I CACGTG 6 cut(s) 307, 340, 458, 609, 619, 807
EcoRII CCWGG 4 cut(s) 255, 350, 404, 717
Esp3I CGTCTC 2 cut(s) 273, 370
FaeI CATG 5 cut(s) 221, 514, 562, 756, 1018
FaqI GGGAC 2 cut(s) 906, 1135
FatI CATG 5 cut(s) 217, 510, 558, 752, 1014
FauI CCCGC 4 cut(s) 784, 991, 1111, 1205
FblI GTMKAC 2 cut(s) 1206, 1300
Fnu4HI GCNGC 5 cut(s) 691, 798, 967, 1076, 1138
FokI GGATG 1 cut(s) 479
Fsp4HI GCNGC 5 cut(s) 691, 798, 967, 1076, 1138
FspBI CTAG 3 cut(s) 84, 287, 419
GlaI GCGC 7 cut(s) 361, 641, 660, 749, 997, 1117, 1335
GluI GCNGC 5 cut(s) 691, 798, 967, 1076, 1138
GsuI CTGGAG 1 cut(s) 226
HaeII RGCGCY 1 cut(s) 1337
HaeIII GGCC 6 cut(s) 134, 293, 669, 722, 944, 966
HapII CCGG 5 cut(s) 131, 861, 1079, 1178, 1304
HgaI GACGC 1 cut(s) 632
HhaI GCGC 7 cut(s) 362, 642, 661, 750, 998, 1118, 1336
Hin1I GRCGYC 2 cut(s) 282, 624
Hin1II CATG 5 cut(s) 221, 514, 562, 756, 1018
Hin6I GCGC 7 cut(s) 360, 640, 659, 748, 996, 1116, 1334
HinP1I GCGC 7 cut(s) 360, 640, 659, 748, 996, 1116, 1334
HincII GTYRAC 2 cut(s) 826, 1207
HindII GTYRAC 2 cut(s) 826, 1207
HinfI GANTC 3 cut(s) 791, 887, 954
HpaII CCGG 5 cut(s) 131, 861, 1079, 1178, 1304
HphI GGTGA 3 cut(s) 29, 66, 1291
Hpy166II GTNNAC 7 cut(s) 622, 826, 905, 1033, 1207, 1249, 1301
Hpy188I TCNGA 4 cut(s) 96, 231, 533, 992
Hpy188III TCNNGA 2 cut(s) 884, 923
Hpy8I GTNNAC 7 cut(s) 622, 826, 905, 1033, 1207, 1249, 1301
Hpy99I CGWCG 4 cut(s) 686, 728, 1211, 1256
HpyAV CCTTC 4 cut(s) 189, 592, 886, 1093
HpyCH4III ACNGT 4 cut(s) 840, 909, 934, 1126
HpyCH4V TGCA 8 cut(s) 217, 765, 1053, 1140, 1162, 1218, 1267, 1312
HpyF10VI GCNNNNNNNGC 3 cut(s) 479, 696, 1183
Hsp92I GRCGYC 2 cut(s) 282, 624
Hsp92II CATG 5 cut(s) 221, 514, 562, 756, 1018
HspAI GCGC 7 cut(s) 360, 640, 659, 748, 996, 1116, 1334
KroI GCCGGC 1 cut(s) 1078
KroNI GCCGGC 1 cut(s) 1080
Kzo9I GATC 8 cut(s) 429, 447, 486, 533, 880, 913, 1062, 1188
LmnI GCTCC 7 cut(s) 119, 271, 555, 745, 1183, 1227, 1331
Lsp1109I GCAGC 2 cut(s) 784, 1124
LweI GCATC 2 cut(s) 255, 1062
MaeI CTAG 3 cut(s) 84, 287, 419
MaeIII GTNAC 3 cut(s) 335, 844, 946
MalI GATC 8 cut(s) 431, 449, 488, 535, 882, 915, 1064, 1190
MboI GATC 8 cut(s) 429, 447, 486, 533, 880, 913, 1062, 1188
MboII GAAGA 3 cut(s) 63, 263, 272
MluCI AATT 5 cut(s) 200, 225, 575, 729, 1003
MlyI GAGTC 1 cut(s) 785
MmeI TCCRAC 2 cut(s) 254, 970
MreI CGCCGGCG 1 cut(s) 1078
MroNI GCCGGC 1 cut(s) 1078
MslI CAYNNNNRTG 2 cut(s) 1019, 1262
MspI CCGG 5 cut(s) 131, 861, 1079, 1178, 1304
MspR9I CCNGG 4 cut(s) 257, 352, 406, 719
Mva1269I GAATGC 2 cut(s) 1243, 1269
MvaI CCWGG 4 cut(s) 257, 352, 406, 719
MvnI CGCG 5 cut(s) 90, 360, 659, 998, 1118
MwoI GCNNNNNNNGC 3 cut(s) 479, 696, 1183
NaeI GCCGGC 1 cut(s) 1080
NdeII GATC 8 cut(s) 429, 447, 486, 533, 880, 913, 1062, 1188
NgoMIV GCCGGC 1 cut(s) 1078
NlaIII CATG 5 cut(s) 221, 514, 562, 756, 1018
NlaIV GGNNCC 5 cut(s) 356, 614, 694, 943, 1258
NmuCI GTSAC 3 cut(s) 335, 844, 946
NspI RCATGY 2 cut(s) 221, 562
NspV TTCGAA 1 cut(s) 1289
PaqCI CACCTGC 2 cut(s) 704, 1209
PcsI WCGNNNNNNNCGW 3 cut(s) 486, 732, 825
PctI GAATGC 2 cut(s) 1243, 1269
PdiI GCCGGC 1 cut(s) 1080
PfeI GAWTC 2 cut(s) 887, 954
Pfl23II CGTACG 1 cut(s) 909
PflMI CCANNNNNTGG 2 cut(s) 351, 897
PfoI TCCNGGA 1 cut(s) 350
PinAI ACCGGT 1 cut(s) 860
PkrI GCNGC 5 cut(s) 692, 799, 968, 1077, 1139
PleI GAGTC 1 cut(s) 785
PmaCI CACGTG 6 cut(s) 307, 340, 458, 609, 619, 807
PmlI CACGTG 6 cut(s) 307, 340, 458, 609, 619, 807
PpsI GAGTC 1 cut(s) 785
Ppu21I YACGTR 7 cut(s) 307, 340, 458, 609, 619, 807, 844
Psp1406I AACGTT 1 cut(s) 1058
Psp6I CCWGG 4 cut(s) 255, 350, 404, 717
PspCI CACGTG 6 cut(s) 307, 340, 458, 609, 619, 807
PspGI CCWGG 4 cut(s) 255, 350, 404, 717
PspLI CGTACG 1 cut(s) 909
PspN4I GGNNCC 5 cut(s) 356, 614, 694, 943, 1258
PspPI GGNCC 4 cut(s) 128, 667, 905, 942
RsaI GTAC 3 cut(s) 842, 911, 1323
RsaNI GTAC 3 cut(s) 841, 910, 1322
RseI CAYNNNNRTG 2 cut(s) 1019, 1262
SalI GTCGAC 1 cut(s) 1205
SatI GCNGC 5 cut(s) 691, 798, 967, 1076, 1138
Sau3AI GATC 8 cut(s) 429, 447, 486, 533, 880, 913, 1062, 1188
Sau96I GGNCC 4 cut(s) 128, 667, 905, 942
SchI GAGTC 1 cut(s) 785
ScrFI CCNGG 4 cut(s) 257, 352, 406, 719
SfaNI GCATC 2 cut(s) 255, 1062
SfuI TTCGAA 1 cut(s) 1289
SgrAI CRCCGGYG 1 cut(s) 1078
SinI GGWCC 2 cut(s) 128, 905
SmiMI CAYNNNNRTG 2 cut(s) 1019, 1262
SmlI CTYRAG 2 cut(s) 785, 1046
SmoI CTYRAG 2 cut(s) 785, 1046
Sse9I AATT 5 cut(s) 200, 225, 575, 729, 1003
SspMI CTAG 3 cut(s) 84, 287, 419
StyD4I CCNGG 4 cut(s) 255, 350, 404, 717
TaaI ACNGT 4 cut(s) 840, 909, 934, 1126
TaqI TCGA 7 cut(s) 249, 489, 726, 879, 1130, 1206, 1289
TaqII GACCGA 1 cut(s) 805
TasI AATT 5 cut(s) 200, 225, 575, 729, 1003
TauI GCSGC 3 cut(s) 693, 969, 1078
TfiI GAWTC 2 cut(s) 887, 954
TseFI GTSAC 3 cut(s) 335, 844, 946
TseI GCWGC 2 cut(s) 797, 1137
Tsp45I GTSAC 3 cut(s) 335, 844, 946
TspDTI ATGAA 2 cut(s) 527, 1031
TspGWI ACGGA 2 cut(s) 291, 863
Van91I CCANNNNNTGG 2 cut(s) 351, 897
VpaK11BI GGWCC 2 cut(s) 128, 905
XapI RAATTY 4 cut(s) 225, 575, 729, 1003
XceI RCATGY 2 cut(s) 221, 562
XmiI GTMKAC 2 cut(s) 1206, 1300
XspI CTAG 3 cut(s) 84, 287, 419
ZraI GACGTC 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.