Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0010437

Physical Location & Seq

Genomic Coordinates Reverse (-)

39628969 .. 39629565

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1280300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGAATGTGCAACTCAATGCCCGCTATCCTCAAGGACTCCGCTGCCTCCACGTGGCTCTCTGTTGCCGTCGACGACAGCAAAATGTACGTGACAGATAAAAACACCAGTTTAACCTACACGTTCGATCCAGATTCCAAGACGTGTTGTGGACCGTACGATCTGTGTCCCGACGCGACGGTGTTCGGCGTCGTGACGGGATTTGCTAATGGCCGCTTTATTTTAGTGGAGGCTGTCGGAATCGCGGTGAATTTGAAAACCGTAAAAATGTGGGAAGTGAACGGGGTGTCGCTTGAGTGCAAAAAGTTGATCGGGGAGATGCCGCCGGTGATGGTGGAGAAGCTGAAGGGTGAGACCGACTCCACGGGCACGGTTTCGATGAGCTGCACGAGAGATATGGTGTGCCTGCATAACACTTGGCCGCGGGAGGAGTTGATCCTCTGCGAGCTTGTCGATGGCGGGTGCAGGCGGGGGAGCGTACGGAATGCGGTTGTGAACGACGGCACCCGAATGCAGAAGTTGGTGGTGACGTGTTCGAATGTTGGTCTACCGGATTTGCATAAAGCCGAACAACTTAGAGCGCTGAAAGTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1 Kelch_6

Protein Analysis

199

Amino Acids

21.5

Weight (kDa)

5.73

Isoelectric Point (pI)

34.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23390
fragaria_vesca	FvH4_4g32970
malus_domestica	MD13G1095300.v1.1 MD13G1280300.v1.1 MD16G1096400.v1.1 MD16G1096500.v1.1
prunus_persica	Prupe.1G249900_v2.0.a1
pyrus_communis	pycom13g08310 pycom16g08240 pycom16g08250
rosa_chinensis	RchiOBHm_Chr4g0441991
rosa_laevigata	RLG00000006052
rosa_multiflora	Rmu_sc0002501.1_g000021 Rmu_sc0011990.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382880
rosa_rugosa	Rorug04G0337600
rosa_samantha	Rh4AG389600 Rh4BG403000 Rh4CG418200 Rh4DG396200
rosa_wichuraiana	Rw4G033660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	503
AccI	GTMKAC	2 cut(s)	72, 547
AccII	CGCG	3 cut(s)	176, 245, 424
AclWI	GGATC	2 cut(s)	122, 430
AcoI	YGGCCR	2 cut(s)	211, 419
AcsI	RAATTY	1 cut(s)	250
AcuI	CTGAAG	1 cut(s)	365
AcvI	CACGTG	1 cut(s)	54
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	3 cut(s)	89, 158, 480
AfeI	AGCGCT	1 cut(s)	582
AfiI	CCNNNNNNNGG	1 cut(s)	54
AflIII	ACRYGT	3 cut(s)	120, 143, 530
AgsI	TTSAA	1 cut(s)	256
AjiI	CACGTC	2 cut(s)	144, 531
AluBI	AGCT	3 cut(s)	343, 384, 448
AluI	AGCT	3 cut(s)	343, 384, 448
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	2 cut(s)	122, 430
Aor51HI	AGCGCT	1 cut(s)	582
AoxI	GGCC	2 cut(s)	211, 419
ApeKI	GCWGC	2 cut(s)	44, 384
ApoI	RAATTY	1 cut(s)	250
AspLEI	GCGC	1 cut(s)	583
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	4 cut(s)	259, 340, 362, 538
AsuII	TTCGAA	1 cut(s)	536
AvaII	GGWCC	1 cut(s)	152
BaeGI	GKGCMC	1 cut(s)	371
BanI	GGYRCC	1 cut(s)	503
BauI	CACGAG	1 cut(s)	388
BbrPI	CACGTG	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	31, 371
BccI	CCATC	2 cut(s)	325, 449
BceAI	ACGGC	2 cut(s)	53, 517
BcoDI	GTCTC	1 cut(s)	347
BfoI	RGCGCY	1 cut(s)	584
BisI	GCNGC	5 cut(s)	45, 214, 323, 385, 422
BlsI	GCNGC	5 cut(s)	46, 215, 324, 386, 423
Bme18I	GGWCC	1 cut(s)	152
BmgBI	CACGTC	2 cut(s)	144, 531
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	505
BmsI	GCATC	1 cut(s)	309
BplI	GAGNNNNNCTC	2 cut(s)	344, 376
Bpu14I	TTCGAA	1 cut(s)	536
BpuEI	CTTGAG	2 cut(s)	17, 314
BsaAI	YACGTR	2 cut(s)	54, 91
BsaHI	GRCGYC	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	2 cut(s)	363, 422
BsaWI	WCCGGW	1 cut(s)	550
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse118I	RCCGGY	1 cut(s)	325
Bse1I	ACTGG	1 cut(s)	108
BseDI	CCNNGG	2 cut(s)	363, 422
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseNI	ACTGG	1 cut(s)	108
BseRI	GAGGAG	1 cut(s)	443
BseSI	GKGCMC	1 cut(s)	371
BseXI	GCAGC	2 cut(s)	31, 371
BsgI	GTGCAG	2 cut(s)	370, 484
Bsh1236I	CGCG	3 cut(s)	176, 245, 424
BshFI	GGCC	2 cut(s)	213, 421
BshNI	GGYRCC	1 cut(s)	503
BsiSI	CCGG	2 cut(s)	326, 551
BsiWI	CGTACG	2 cut(s)	156, 478
BslFI	GGGAC	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	347
BsmFI	GGGAC	1 cut(s)	153
BsmI	GAATGC	2 cut(s)	490, 516
BsnI	GGCC	2 cut(s)	213, 421
Bso31I	GGTCTC	1 cut(s)	347
Bsp119I	TTCGAA	1 cut(s)	536
Bsp1286I	GDGCHC	1 cut(s)	371
Bsp143I	GATC	4 cut(s)	127, 160, 309, 435
BspANI	GGCC	2 cut(s)	213, 421
BspFNI	CGCG	3 cut(s)	176, 245, 424
BspLI	GGNNCC	1 cut(s)	505
BspPI	GGATC	2 cut(s)	122, 430
BspT104I	TTCGAA	1 cut(s)	536
BspT107I	GGYRCC	1 cut(s)	503
BspTNI	GGTCTC	1 cut(s)	347
BsrFI	RCCGGY	1 cut(s)	325
BsrI	ACTGG	1 cut(s)	108
BssAI	RCCGGY	1 cut(s)	325
BssECI	CCNNGG	2 cut(s)	363, 422
BssMI	GATC	4 cut(s)	127, 160, 309, 435
BssNI	GRCGYC	1 cut(s)	189
BssSI	CACGAG	1 cut(s)	388
Bst2BI	CACGAG	1 cut(s)	388
Bst4CI	ACNGT	4 cut(s)	156, 181, 262, 373
BstACI	GRCGYC	1 cut(s)	189
BstBAI	YACGTR	2 cut(s)	54, 91
BstBI	TTCGAA	1 cut(s)	536
BstC8I	GCNNGC	4 cut(s)	24, 407, 446, 467
BstDEI	CTNAG	1 cut(s)	575
BstDSI	CCRYGG	2 cut(s)	363, 422
BstFNI	CGCG	3 cut(s)	176, 245, 424
BstH2I	RGCGCY	1 cut(s)	584
BstHHI	GCGC	1 cut(s)	583
BstKTI	GATC	4 cut(s)	130, 163, 312, 438
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	4 cut(s)	127, 160, 309, 435
BstSLI	GKGCMC	1 cut(s)	371
BstUI	CGCG	3 cut(s)	176, 245, 424
BstV1I	GCAGC	2 cut(s)	31, 371
BsuRI	GGCC	2 cut(s)	213, 421
BtgI	CCRYGG	2 cut(s)	363, 422
BtrI	CACGTC	2 cut(s)	144, 531
Cac8I	GCNNGC	4 cut(s)	24, 407, 446, 467
CfoI	GCGC	1 cut(s)	583
Cfr10I	RCCGGY	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	152
Cfr42I	CCGCGG	1 cut(s)	425
CseI	GACGC	2 cut(s)	178, 182
Csp6I	GTAC	3 cut(s)	88, 157, 479
CviJI	RGCY	8 cut(s)	58, 213, 233, 343, 384, 421, 448, 566
CviKI_1	RGCY	8 cut(s)	58, 213, 233, 343, 384, 421, 448, 566
CviQI	GTAC	3 cut(s)	88, 157, 479
DdeI	CTNAG	1 cut(s)	575
DpnI	GATC	4 cut(s)	129, 162, 311, 437
DpnII	GATC	4 cut(s)	127, 160, 309, 435
EaeI	YGGCCR	2 cut(s)	211, 419
Eco31I	GGTCTC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	152
Eco47III	AGCGCT	1 cut(s)	582
Eco57I	CTGAAG	1 cut(s)	365
Eco72I	CACGTG	1 cut(s)	54
FaiI	YATR	3 cut(s)	398, 411, 561
FaqI	GGGAC	1 cut(s)	153
FauI	CCCGC	4 cut(s)	31, 417, 452, 462
FblI	GTMKAC	2 cut(s)	72, 547
Fnu4HI	GCNGC	5 cut(s)	45, 214, 323, 385, 422
Fsp4HI	GCNGC	5 cut(s)	45, 214, 323, 385, 422
GlaI	GCGC	1 cut(s)	582
GluI	GCNGC	5 cut(s)	45, 214, 323, 385, 422
HaeII	RGCGCY	1 cut(s)	584
HaeIII	GGCC	2 cut(s)	213, 421
HapII	CCGG	2 cut(s)	326, 551
HgaI	GACGC	2 cut(s)	178, 182
HhaI	GCGC	1 cut(s)	583
Hin1I	GRCGYC	1 cut(s)	189
Hin6I	GCGC	1 cut(s)	581
HinP1I	GCGC	1 cut(s)	581
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	4 cut(s)	38, 134, 240, 359
HpaII	CCGG	2 cut(s)	326, 551
HphI	GGTGA	4 cut(s)	259, 340, 362, 538
Hpy166II	GTNNAC	5 cut(s)	73, 152, 280, 496, 548
Hpy188I	TCNGA	1 cut(s)	239
Hpy188III	TCNNGA	3 cut(s)	131, 170, 193
Hpy8I	GTNNAC	5 cut(s)	73, 152, 280, 496, 548
Hpy99I	CGWCG	6 cut(s)	74, 77, 176, 181, 194, 503
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	4 cut(s)	156, 181, 262, 373
HpyCH4IV	ACGT	5 cut(s)	53, 90, 122, 143, 530
HpyCH4V	TGCA	7 cut(s)	12, 300, 387, 409, 465, 514, 559
HpyF3I	CTNAG	1 cut(s)	575
HpySE526I	ACGT	5 cut(s)	53, 90, 122, 143, 530
Hsp92I	GRCGYC	1 cut(s)	189
HspAI	GCGC	1 cut(s)	581
KspI	CCGCGG	1 cut(s)	425
Kzo9I	GATC	4 cut(s)	127, 160, 309, 435
LmnI	GCTCC	1 cut(s)	474
LpnPI	CCDG	6 cut(s)	121, 144, 339, 419, 451, 564
Lsp1109I	GCAGC	2 cut(s)	31, 371
LweI	GCATC	1 cut(s)	309
MaeII	ACGT	5 cut(s)	53, 90, 122, 143, 530
MaeIII	GTNAC	3 cut(s)	91, 193, 526
MalI	GATC	4 cut(s)	129, 162, 311, 437
MboI	GATC	4 cut(s)	127, 160, 309, 435
MhlI	GDGCHC	1 cut(s)	371
MluCI	AATT	1 cut(s)	250
MlyI	GAGTC	2 cut(s)	32, 353
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	5 cut(s)	41, 58, 223, 421, 449
MseI	TTAA	1 cut(s)	113
MslI	CAYNNNNRTG	1 cut(s)	509
MspA1I	CMGCKG	2 cut(s)	44, 424
MspI	CCGG	2 cut(s)	326, 551
Mva1269I	GAATGC	2 cut(s)	490, 516
MvnI	CGCG	3 cut(s)	176, 245, 424
NdeII	GATC	4 cut(s)	127, 160, 309, 435
NlaIV	GGNNCC	1 cut(s)	505
NmuCI	GTSAC	3 cut(s)	91, 193, 526
NspV	TTCGAA	1 cut(s)	536
PctI	GAATGC	2 cut(s)	490, 516
PfeI	GAWTC	2 cut(s)	134, 240
Pfl23II	CGTACG	2 cut(s)	156, 478
PkrI	GCNGC	5 cut(s)	46, 215, 324, 386, 423
PleI	GAGTC	2 cut(s)	32, 353
PmaCI	CACGTG	1 cut(s)	54
PmlI	CACGTG	1 cut(s)	54
PpsI	GAGTC	2 cut(s)	32, 353
Ppu21I	YACGTR	2 cut(s)	54, 91
PspCI	CACGTG	1 cut(s)	54
PspLI	CGTACG	2 cut(s)	156, 478
PspN4I	GGNNCC	1 cut(s)	505
PspPI	GGNCC	1 cut(s)	152
RsaI	GTAC	3 cut(s)	89, 158, 480
RsaNI	GTAC	3 cut(s)	88, 157, 479
RseI	CAYNNNNRTG	1 cut(s)	509
SacII	CCGCGG	1 cut(s)	425
SalI	GTCGAC	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	5 cut(s)	45, 214, 323, 385, 422
Sau3AI	GATC	4 cut(s)	127, 160, 309, 435
Sau96I	GGNCC	1 cut(s)	152
SchI	GAGTC	2 cut(s)	32, 353
SduI	GDGCHC	1 cut(s)	371
SetI	ASST	9 cut(s)	56, 93, 119, 125, 146, 345, 386, 450, 533
SfaNI	GCATC	1 cut(s)	309
Sfr303I	CCGCGG	1 cut(s)	425
SfuI	TTCGAA	1 cut(s)	536
SgrAI	CRCCGGYG	1 cut(s)	325
SgrBI	CCGCGG	1 cut(s)	425
SgrDI	CGTCGACG	1 cut(s)	71
SinI	GGWCC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	509
SmlI	CTYRAG	2 cut(s)	32, 293
SmoI	CTYRAG	2 cut(s)	32, 293
Sse9I	AATT	1 cut(s)	250
TaaI	ACNGT	4 cut(s)	156, 181, 262, 373
TaiI	ACGT	5 cut(s)	56, 93, 125, 146, 533
TaqI	TCGA	5 cut(s)	72, 126, 377, 453, 536
TaqII	GACCGA	1 cut(s)	371
TasI	AATT	1 cut(s)	250
TauI	GCSGC	3 cut(s)	216, 325, 424
TfiI	GAWTC	2 cut(s)	134, 240
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TseFI	GTSAC	3 cut(s)	91, 193, 526
TseI	GCWGC	2 cut(s)	44, 384
Tsp45I	GTSAC	3 cut(s)	91, 193, 526
TspGWI	ACGGA	1 cut(s)	496
VpaK11BI	GGWCC	1 cut(s)	152
XapI	RAATTY	1 cut(s)	250
XmiI	GTMKAC	2 cut(s)	72, 547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.