MD16G1096500.v1.1

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
6734265 .. 6735410
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1096500.v1.1.491

Sequence Viewer

Length: 1146 bp
ATGGCGACTGATGAGCTTGAAGACCAAACTCGGACAGAAACTTCCCACATCGAAGTCCGGCAAGGACCTCACGAACTCTACGGAGACATCTTAGAGTCCATACTCTCCCGCGTGCCTCTCCTCCACCTCGTGCCTGCCTGCCATGTGTCCAAGTCCTGGAAGCGCACCGGCTCTTCCTCTCTCCGCCGCTTCCACCGAAACATCAAGCCCTGGCTCATTGTCCTCGCTCAAGCCACCAGGTCTCCCTACCACACCACCGCACGTGCCTACGACCCCGACTCGCACGCTTGGATCGACATCCACTCTCAGCCGATGATCGGATCCATCTCCACCCTCCGATCCTCGAACTCCCTCCTCTACGCGCTTTCTCCCTCTAAATTCGCCTTTTCAACTGATCCACTGCACTACACGTGGCACATGGTGGATGCCCCGCTGATATGGCGCACGGACCCGATTACCGGGGTGGTGGGCCACCACATCGTCGTCGCTGGCGGCACTTGTGATTTCGAGGACGATCCACTGTCGGTGGAAATGTACGACACCGTGTCAAAAACGTGGACCAGGTGCGACTCGATACCCGCTGTTCTCGAGGACTCCGCAGCCTCCACCTGGCTCTCTGTCGCCGTCGACGACAGCAAAATGTACGTGATGGATAAAGGCTCCGGTGTGACATGCTCGTTCGACCCCGATTCCAGCACGTGGTCTGGACCGTATGATCTGCGTCCCGATGAGACGGTTTTTAGTGCCGTCATTGGATTCGCTGACGACCGTTTGATCTTAGTGGGCGCGGTGGGAAGCGCAGAGAATTTGGAAGGCGTGAAAGTGTGGGAAGTGAACGGCGTGTCGTTTGAGTGTAAAGAGTTGGTCGGGGAGATGCCAGAGGCAACGGTTGAGAAGCTGAAGGGCGAGAGCGATTGCGTGGCGTCGATTGGGATGAGCTGCATGGGACATATGGTGTGCTTGCATAACCCTTGGTCGCCGGAGGAGCTGATCCTCTGCGAGCTTGCTGAGGGTGGCTGGGGTAGCGTACGGAATGCGGCGGTGGACGACAGGACTCGAATGCAGAAGCTGGTGGTGACGTGTTCGAAAGTGGGTTTGCCGGATTTGCATAAAGCCTTACAAGTTGGAGCGCTGAGATTGGTTTGA

Protein Analysis

382

Amino Acids

41.91

Weight (kDa)

5.15

Isoelectric Point (pI)

49.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_FKB95 PF25210 99 - 236 3e-08 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 156, 699
AccI GTMKAC 1 cut(s) 627
AccII CGCG 3 cut(s) 111, 362, 788
AclWI GGATC 7 cut(s) 299, 315, 328, 333, 389, 509, 985
AcsI RAATTY 2 cut(s) 377, 805
AcuI CTGAAG 1 cut(s) 920
AcvI CACGTG 3 cut(s) 263, 411, 699
AcyI GRCGYC 1 cut(s) 923
AdeI CACNNNGTG 2 cut(s) 130, 421
AfaI GTAC 3 cut(s) 536, 644, 1029
AfeI AGCGCT 1 cut(s) 1131
AfiI CCNNNNNNNGG 5 cut(s) 156, 317, 458, 609, 699
AflIII ACRYGT 2 cut(s) 408, 1079
AgsI TTSAA 2 cut(s) 20, 390
AhdI GACNNNNNGTC 1 cut(s) 544
AjiI CACGTC 1 cut(s) 1080
AjnI CCWGG 5 cut(s) 155, 209, 236, 560, 608
AluBI AGCT 6 cut(s) 16, 898, 939, 988, 1003, 1069
AluI AGCT 6 cut(s) 16, 898, 939, 988, 1003, 1069
Alw26I GTCTC 3 cut(s) 78, 246, 725
AlwI GGATC 7 cut(s) 299, 315, 328, 333, 389, 509, 985
AlwNI CAGNNNCTG 1 cut(s) 1069
Ama87I CYCGRG 1 cut(s) 587
Aor51HI AGCGCT 1 cut(s) 1131
AoxI GGCC 1 cut(s) 469
ApeKI GCWGC 2 cut(s) 599, 939
ApoI RAATTY 2 cut(s) 377, 805
AspLEI GCGC 6 cut(s) 165, 364, 444, 788, 800, 1132
AspS9I GGNCC 5 cut(s) 65, 448, 469, 558, 707
AsuC2I CCSGG 1 cut(s) 460
AsuHPI GGTGA 1 cut(s) 1087
AsuII TTCGAA 1 cut(s) 1085
AvaI CYCGRG 1 cut(s) 587
AvaII GGWCC 4 cut(s) 65, 448, 558, 707
BamHI GGATCC 1 cut(s) 320
BauI CACGAG 1 cut(s) 128
BbrPI CACGTG 3 cut(s) 263, 411, 699
BbsI GAAGAC 1 cut(s) 27
BbvCI CCTCAGC 1 cut(s) 1008
BbvI GCAGC 2 cut(s) 611, 926
BccI CCATC 2 cut(s) 332, 643
BceAI ACGGC 3 cut(s) 608, 731, 853
BciT130I CCWGG 5 cut(s) 157, 211, 238, 562, 610
BcnI CCSGG 1 cut(s) 460
BcoDI GTCTC 3 cut(s) 78, 246, 725
BfoI RGCGCY 1 cut(s) 1133
BisI GCNGC 5 cut(s) 187, 493, 600, 940, 1038
BlsI GCNGC 5 cut(s) 188, 494, 601, 941, 1039
Bme1390I CCNGG 6 cut(s) 157, 211, 238, 460, 562, 610
Bme18I GGWCC 4 cut(s) 65, 448, 558, 707
BmeRI GACNNNNNGTC 1 cut(s) 544
BmeT110I CYCGRG 1 cut(s) 587
BmgBI CACGTC 1 cut(s) 1080
BmgT120I GGNCC 5 cut(s) 65, 448, 469, 558, 707
BmiI GGNNCC 3 cut(s) 322, 450, 661
BmrFI CCNGG 6 cut(s) 157, 211, 238, 460, 562, 610
BmsI GCATC 2 cut(s) 415, 864
BpiI GAAGAC 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 1008
Bpu14I TTCGAA 1 cut(s) 1085
BpuEI CTTGAG 1 cut(s) 213
BpuMI CCSGG 1 cut(s) 460
BsaAI YACGTR 4 cut(s) 263, 411, 646, 699
BsaBI GATNNNNATC 1 cut(s) 296
BsaHI GRCGYC 1 cut(s) 923
BsaI GGTCTC 1 cut(s) 246
BsaJI CCNNGG 3 cut(s) 209, 459, 971
BsaWI WCCGGW 1 cut(s) 662
BsaXI ACNNNNNCTCC 2 cut(s) 226, 256
Bsc4I CCNNNNNNNGG 5 cut(s) 156, 317, 458, 609, 699
Bse118I RCCGGY 1 cut(s) 167
Bse8I GATNNNNATC 1 cut(s) 296
BseBI CCWGG 5 cut(s) 157, 211, 238, 562, 610
BseDI CCNNGG 3 cut(s) 209, 459, 971
BseGI GGATG 3 cut(s) 297, 430, 939
BseJI GATNNNNATC 1 cut(s) 296
BseLI CCNNNNNNNGG 5 cut(s) 156, 317, 458, 609, 699
BseMII CTCAG 3 cut(s) 320, 999, 1124
BseRI GAGGAG 3 cut(s) 110, 344, 998
BseXI GCAGC 2 cut(s) 611, 926
BseYI CCCAGC 1 cut(s) 1017
BsgI GTGCAG 1 cut(s) 386
Bsh1236I CGCG 3 cut(s) 111, 362, 788
Bsh1285I CGRYCG 1 cut(s) 769
BshFI GGCC 1 cut(s) 471
BsiEI CGRYCG 1 cut(s) 769
BsiHKCI CYCGRG 1 cut(s) 587
BsiSI CCGG 6 cut(s) 58, 168, 459, 663, 980, 1100
BsiWI CGTACG 1 cut(s) 1027
BslFI GGGAC 2 cut(s) 708, 960
BslI CCNNNNNNNGG 5 cut(s) 156, 317, 458, 609, 699
BsmAI GTCTC 3 cut(s) 78, 246, 725
BsmBI CGTCTC 1 cut(s) 725
BsmFI GGGAC 2 cut(s) 708, 960
BsmI GAATGC 2 cut(s) 1039, 1065
BsnI GGCC 1 cut(s) 471
Bso31I GGTCTC 1 cut(s) 246
BsoBI CYCGRG 1 cut(s) 587
Bsp119I TTCGAA 1 cut(s) 1085
Bsp143I GATC 9 cut(s) 291, 315, 320, 338, 394, 514, 715, 774, 990
BspANI GGCC 1 cut(s) 471
BspCNI CTCAG 3 cut(s) 319, 1000, 1125
BspFNI CGCG 3 cut(s) 111, 362, 788
BspLI GGNNCC 3 cut(s) 322, 450, 661
BspPI GGATC 7 cut(s) 299, 315, 328, 333, 389, 509, 985
BspQI GCTCTTC 1 cut(s) 178
BspT104I TTCGAA 1 cut(s) 1085
BspTNI GGTCTC 1 cut(s) 246
BsrFI RCCGGY 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 3 cut(s) 209, 459, 971
BssMI GATC 9 cut(s) 291, 315, 320, 338, 394, 514, 715, 774, 990
BssNI GRCGYC 1 cut(s) 923
BssSI CACGAG 1 cut(s) 128
BssT1I CCWWGG 1 cut(s) 971
Bst2BI CACGAG 1 cut(s) 128
Bst2UI CCWGG 5 cut(s) 157, 211, 238, 562, 610
Bst4CI ACNGT 6 cut(s) 522, 544, 711, 736, 770, 889
Bst6I CTCTTC 1 cut(s) 178
BstACI GRCGYC 1 cut(s) 923
BstBAI YACGTR 4 cut(s) 263, 411, 646, 699
BstBI TTCGAA 1 cut(s) 1085
BstC8I GCNNGC 8 cut(s) 113, 135, 139, 285, 490, 962, 1001, 1005
BstDEI CTNAG 5 cut(s) 91, 306, 778, 1008, 1133
BstF5I GGATG 3 cut(s) 297, 430, 939
BstFNI CGCG 3 cut(s) 111, 362, 788
BstH2I RGCGCY 1 cut(s) 1133
BstHHI GCGC 6 cut(s) 165, 364, 444, 788, 800, 1132
BstKTI GATC 9 cut(s) 294, 318, 323, 341, 397, 517, 718, 777, 993
BstMAI GTCTC 3 cut(s) 78, 246, 725
BstMBI GATC 9 cut(s) 291, 315, 320, 338, 394, 514, 715, 774, 990
BstMCI CGRYCG 1 cut(s) 769
BstMWI GCNNNNNNNGC 4 cut(s) 439, 985, 1023, 1105
BstNI CCWGG 5 cut(s) 157, 211, 238, 562, 610
BstNSI RCATGY 1 cut(s) 675
BstSCI CCNGG 6 cut(s) 155, 209, 236, 458, 560, 608
BstUI CGCG 3 cut(s) 111, 362, 788
BstV1I GCAGC 2 cut(s) 611, 926
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 320
BstYI RGATCY 1 cut(s) 320
BsuRI GGCC 1 cut(s) 471
BtrI CACGTC 1 cut(s) 1080
BtsCI GGATG 3 cut(s) 297, 430, 939
BtsI GCAGTG 1 cut(s) 398
BtsIMutI CAGTG 2 cut(s) 398, 518
Cac8I GCNNGC 8 cut(s) 113, 135, 139, 285, 490, 962, 1001, 1005
CaiI CAGNNNCTG 1 cut(s) 1069
CfoI GCGC 6 cut(s) 165, 364, 444, 788, 800, 1132
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 5 cut(s) 65, 448, 469, 558, 707
CseI GACGC 2 cut(s) 710, 912
CsiI ACCWGGT 2 cut(s) 236, 560
Csp6I GTAC 3 cut(s) 535, 643, 1028
CviAII CATG 4 cut(s) 143, 418, 672, 943
CviQI GTAC 3 cut(s) 535, 643, 1028
DdeI CTNAG 5 cut(s) 91, 306, 778, 1008, 1133
DpnI GATC 9 cut(s) 293, 317, 322, 340, 396, 516, 717, 776, 992
DpnII GATC 9 cut(s) 291, 315, 320, 338, 394, 514, 715, 774, 990
DraIII CACNNNGTG 2 cut(s) 130, 421
DriI GACNNNNNGTC 1 cut(s) 544
Eam1104I CTCTTC 1 cut(s) 178
Eam1105I GACNNNNNGTC 1 cut(s) 544
EarI CTCTTC 1 cut(s) 178
EciI GGCGGA 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 971
Eco31I GGTCTC 1 cut(s) 246
Eco47I GGWCC 4 cut(s) 65, 448, 558, 707
Eco47III AGCGCT 1 cut(s) 1131
Eco57I CTGAAG 1 cut(s) 920
Eco72I CACGTG 3 cut(s) 263, 411, 699
Eco88I CYCGRG 1 cut(s) 587
EcoO109I RGGNCCY 1 cut(s) 65
EcoRII CCWGG 5 cut(s) 155, 209, 236, 560, 608
EcoT14I CCWWGG 1 cut(s) 971
ErhI CCWWGG 1 cut(s) 971
Esp3I CGTCTC 1 cut(s) 725
FaeI CATG 4 cut(s) 146, 421, 675, 946
FaqI GGGAC 2 cut(s) 708, 960
FatI CATG 4 cut(s) 142, 417, 671, 942
FauI CCCGC 3 cut(s) 116, 438, 586
FauNDI CATATG 1 cut(s) 951
FblI GTMKAC 1 cut(s) 627
Fnu4HI GCNGC 5 cut(s) 187, 493, 600, 940, 1038
FokI GGATG 3 cut(s) 284, 437, 946
Fsp4HI GCNGC 5 cut(s) 187, 493, 600, 940, 1038
GlaI GCGC 6 cut(s) 164, 363, 443, 787, 799, 1131
GluI GCNGC 5 cut(s) 187, 493, 600, 940, 1038
GsaI CCCAGC 1 cut(s) 1021
HaeII RGCGCY 1 cut(s) 1133
HaeIII GGCC 1 cut(s) 471
HapII CCGG 6 cut(s) 58, 168, 459, 663, 980, 1100
HgaI GACGC 2 cut(s) 710, 912
HhaI GCGC 6 cut(s) 165, 364, 444, 788, 800, 1132
Hin1I GRCGYC 1 cut(s) 923
Hin1II CATG 4 cut(s) 146, 421, 675, 946
Hin6I GCGC 6 cut(s) 163, 362, 442, 786, 798, 1130
HinP1I GCGC 6 cut(s) 163, 362, 442, 786, 798, 1130
HincII GTYRAC 1 cut(s) 628
HindII GTYRAC 1 cut(s) 628
HinfI GANTC 7 cut(s) 95, 278, 569, 593, 689, 756, 1054
HpaII CCGG 6 cut(s) 58, 168, 459, 663, 980, 1100
HphI GGTGA 1 cut(s) 1087
Hpy166II GTNNAC 4 cut(s) 558, 628, 835, 1045
Hpy188I TCNGA 3 cut(s) 33, 320, 338
Hpy188III TCNNGA 4 cut(s) 71, 587, 705, 725
Hpy8I GTNNAC 4 cut(s) 558, 628, 835, 1045
Hpy99I CGWCG 5 cut(s) 485, 488, 629, 632, 928
HpyAV CCTTC 2 cut(s) 806, 895
HpyCH4III ACNGT 6 cut(s) 522, 544, 711, 736, 770, 889
HpyCH4IV ACGT 6 cut(s) 262, 410, 554, 645, 698, 1079
HpyCH4V TGCA 5 cut(s) 403, 942, 964, 1063, 1108
HpyF10VI GCNNNNNNNGC 4 cut(s) 439, 985, 1023, 1105
HpyF3I CTNAG 5 cut(s) 91, 306, 778, 1008, 1133
HpySE526I ACGT 6 cut(s) 262, 410, 554, 645, 698, 1079
Hsp92I GRCGYC 1 cut(s) 923
Hsp92II CATG 4 cut(s) 146, 421, 675, 946
HspAI GCGC 6 cut(s) 163, 362, 442, 786, 798, 1130
Kzo9I GATC 9 cut(s) 291, 315, 320, 338, 394, 514, 715, 774, 990
LguI GCTCTTC 1 cut(s) 178
LmnI GCTCC 3 cut(s) 665, 985, 1127
Lsp1109I GCAGC 2 cut(s) 611, 926
LweI GCATC 2 cut(s) 415, 864
MabI ACCWGGT 2 cut(s) 236, 560
MaeII ACGT 6 cut(s) 262, 410, 554, 645, 698, 1079
MaeIII GTNAC 2 cut(s) 667, 1075
MalI GATC 9 cut(s) 293, 317, 322, 340, 396, 516, 717, 776, 992
MboI GATC 9 cut(s) 291, 315, 320, 338, 394, 514, 715, 774, 990
MboII GAAGA 2 cut(s) 32, 165
MflI RGATCY 1 cut(s) 320
MluCI AATT 2 cut(s) 377, 805
MlyI GAGTC 5 cut(s) 104, 272, 563, 587, 1048
MmeI TCCRAC 1 cut(s) 1105
MspA1I CMGCKG 2 cut(s) 433, 581
MspI CCGG 6 cut(s) 58, 168, 459, 663, 980, 1100
MspR9I CCNGG 6 cut(s) 157, 211, 238, 460, 562, 610
Mva1269I GAATGC 2 cut(s) 1039, 1065
MvaI CCWGG 5 cut(s) 157, 211, 238, 562, 610
MvnI CGCG 3 cut(s) 111, 362, 788
MwoI GCNNNNNNNGC 4 cut(s) 439, 985, 1023, 1105
NciI CCSGG 1 cut(s) 460
NdeI CATATG 1 cut(s) 951
NdeII GATC 9 cut(s) 291, 315, 320, 338, 394, 514, 715, 774, 990
NlaIII CATG 4 cut(s) 146, 421, 675, 946
NlaIV GGNNCC 3 cut(s) 322, 450, 661
NmuCI GTSAC 2 cut(s) 667, 1075
NspI RCATGY 1 cut(s) 675
NspV TTCGAA 1 cut(s) 1085
PaeR7I CTCGAG 1 cut(s) 587
PciSI GCTCTTC 1 cut(s) 178
PcsI WCGNNNNNNNCGW 2 cut(s) 291, 627
PctI GAATGC 2 cut(s) 1039, 1065
PfeI GAWTC 2 cut(s) 689, 756
Pfl23II CGTACG 1 cut(s) 1027
PflMI CCANNNNNTGG 2 cut(s) 156, 699
PfoI TCCNGGA 1 cut(s) 155
PkrI GCNGC 5 cut(s) 188, 494, 601, 941, 1039
PleI GAGTC 5 cut(s) 103, 272, 563, 587, 1048
PmaCI CACGTG 3 cut(s) 263, 411, 699
PmlI CACGTG 3 cut(s) 263, 411, 699
PpsI GAGTC 5 cut(s) 103, 272, 563, 587, 1048
Ppu21I YACGTR 4 cut(s) 263, 411, 646, 699
PpuMI RGGWCCY 1 cut(s) 65
Psp5II RGGWCCY 1 cut(s) 65
Psp6I CCWGG 5 cut(s) 155, 209, 236, 560, 608
PspCI CACGTG 3 cut(s) 263, 411, 699
PspFI CCCAGC 1 cut(s) 1017
PspGI CCWGG 5 cut(s) 155, 209, 236, 560, 608
PspLI CGTACG 1 cut(s) 1027
PspN4I GGNNCC 3 cut(s) 322, 450, 661
PspPI GGNCC 5 cut(s) 65, 448, 469, 558, 707
PspPPI RGGWCCY 1 cut(s) 65
PstNI CAGNNNCTG 1 cut(s) 1069
PsuI RGATCY 1 cut(s) 320
RsaI GTAC 3 cut(s) 536, 644, 1029
RsaNI GTAC 3 cut(s) 535, 643, 1028
SalI GTCGAC 1 cut(s) 626
SapI GCTCTTC 1 cut(s) 178
SatI GCNGC 5 cut(s) 187, 493, 600, 940, 1038
Sau3AI GATC 9 cut(s) 291, 315, 320, 338, 394, 514, 715, 774, 990
Sau96I GGNCC 5 cut(s) 65, 448, 469, 558, 707
SchI GAGTC 5 cut(s) 104, 272, 563, 587, 1048
ScrFI CCNGG 6 cut(s) 157, 211, 238, 460, 562, 610
SexAI ACCWGGT 2 cut(s) 236, 560
SfaNI GCATC 2 cut(s) 415, 864
Sfr274I CTCGAG 1 cut(s) 587
SfuI TTCGAA 1 cut(s) 1085
SgrDI CGTCGACG 1 cut(s) 626
SinI GGWCC 4 cut(s) 65, 448, 558, 707
SlaI CTCGAG 1 cut(s) 587
SmlI CTYRAG 2 cut(s) 228, 587
SmoI CTYRAG 2 cut(s) 228, 587
Sse9I AATT 2 cut(s) 377, 805
StyD4I CCNGG 6 cut(s) 155, 209, 236, 458, 560, 608
StyI CCWWGG 1 cut(s) 971
TaaI ACNGT 6 cut(s) 522, 544, 711, 736, 770, 889
TaiI ACGT 6 cut(s) 265, 413, 557, 648, 701, 1082
TasI AATT 2 cut(s) 377, 805
TauI GCSGC 3 cut(s) 189, 495, 1040
TfiI GAWTC 2 cut(s) 689, 756
TscAI CASTG 2 cut(s) 405, 525
TseFI GTSAC 2 cut(s) 667, 1075
TseI GCWGC 2 cut(s) 599, 939
Tsp45I GTSAC 2 cut(s) 667, 1075
TspGWI ACGGA 3 cut(s) 96, 461, 1045
TspRI CASTG 2 cut(s) 405, 525
Van91I CCANNNNNTGG 2 cut(s) 156, 699
VpaK11BI GGWCC 4 cut(s) 65, 448, 558, 707
XapI RAATTY 2 cut(s) 377, 805
XceI RCATGY 1 cut(s) 675
XhoI CTCGAG 1 cut(s) 587
XmiI GTMKAC 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.