Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0006750

Physical Location & Seq

Genomic Coordinates Reverse (-)

21068701 .. 21077173

Gene Structure 8473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1218500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2892 bp

ATGAGCACGTCTAGTCAGCTACAAGAAATTAACAGAAAAACTAGCCAGATTGCCCTGCCTAACCATGATGAAGAAAGCGCTGCTAGAACAAGGCCTTTCAGCTTTGAAGAGATTATGCTTAGGAGGAATAACAAGAAGTTATGTGATAGTGTTGTAAAGGAAGTCGTAGATGTAGGTAATGTACCAAGGGAATCTATGGTTAAAAATTCTTTTGCGAGTTTTGAGTCTGAAAAGGATCACAGACACCATAAAGATTTGCCCCCTGTTGATAAAAAGCCTGCCTCGGAGGATCCAGTGAAGGCATATTCCAGAAAGAAAGAAATATATAATTCCAAGAGTTCTAAAACGGAAGACGGTTTTTCCAAAGGGAAAGTTAGGGGAGGGCATGAGCCAGAAAGCTTGAAGGATAAACCGAGCAAGGATAGAAGAACTAAAGCTAAAGGAGGCACAACTGAAAAACAAATACATGGTAGGAGAAAAATTGACGAGCGCTCAGATAACTTCCAAAAAGAATCTATAAAGAAGCATTCAAGGGATTTGACAGGAAAGGAGAGACACATGAGCCAAAACAGAGGAAGATCTGAAAGAGAAGCCAAGAGAAAATACCAAAATGGATATGATGAAAAAATTAGAGACAGAAATGCTGCAAAGAAGCATGATTCAGGGAAACATCATCTGTTAGAAACTTCAGAGAGAAAGGAGAGGAAAAAACCATCAAAATCCAATTTCGAAAATTCAAGGCTAAAAAGGGAACGGTCAAGGAGTAGAGACCGTGAAGATACACATAGATTTAGGTCTCCCTCACCAAGGGCACACAATTATACATCTCATAATTTGAGGATCCGCAGCGAGATATCTTCACATTCACTCAAAGACAGGCCTGGAACACAGGATTCTGATATTGACAGGAGTAGAATATCTAATAATGGCTCCAATAGCCACCATCGCCGACATGGTGGGCCGGTGAAAAGGCTTGGTGGTTATTCACCGAGGAAGAGAAGAACCGAGTCTGCTCTTAAGACTCCATCCCCACCTGACCGTTCGCCTGAAAAGAAAAGTGCCAAGTGGGATCATCCCCCTACGGCAACTGACAAGGTATTATCTGGTTCGATTGCTTCTATTTTTAATTCATCAAACTGTAACATGTCTTCAAATGTACATGAGATGGCCATTGCTGTTGCTGTTGCTTCGGCTACTAGGAAATCTATATCTGGGGTTCATCCTAATTCTTTATTGACTAAGAAGAATGCTTCTGTTGACTCGGTCCAACTAACACAAGCTACTCGGCCTATGAGGAGGCTTTATGTAGACAATGTTCCGTCTACAACCTCTGAGAATACTTTAGTGGAATCTCTTAATAATGTTTTGTTGTCTTCCGGTGTCAATCATATCCCAGGAACACGCCCATGCATTAGTTGTGCGATTACCAAAGACAAAGGTCAAGCTGTTGTGGAGTTTCTTACACCGGAAGACGCTATAGCTGCTCTATCTTTTGATGGCACTGACATCTCTGGTTCTATTCTCAAAATAAGGCGCCCTAAAGACTTTGTTGAAGTGGCTGATGTTTATGTTGGGTGTGTCGTAATTCACATTCAGGATGGTTTTCAGACAGTTGCTATTTTCATGCAGACTGGTGATCCAGAGAAATCAATGGCCGCGGTTGAGACAATGAGTGATGTTGTGAAGGATTCCCCCAACAAGATTTTCATTGGTGGAATTTCAAATGCTCTTTCATCAACAATGCTTTTGGAGATAATTAGTGTCTTTGGACCTTTGAAGGCATACCACTTTGAAGTCAACGAGAAACTTAATGAACCGTGTGCTTTTGTGGAGTATGTAGACCAATCAGTTACTCTCAAAGCATGTGCGGGTCTGAACGGTATGAAATTGGGAGGGAGAGTGCTAACTGCAGTTCAAGCAATTCATGGTGCATCATCCTTGGAAAATTGTGGAAATACATCATATGAGATACCAGAATATGCAAAGCCACTTCTCCAACAACCATCGCAGGTCCTAAAGCTTAGAAATGTGTTCAATCTTGAGCACTTCTCACTGCTCTCAGAACCAGAAATGGAAGAAGTTCTGGAAGATGTGCGATTAGAGTGTGCCAGGTTTGGTACTATTAAATCTGCAAAGGTTGTCAAGTATCGCAACAATCACATCATCACCCCAGGGACATCTGAAGCTGTTAATGATGCGAAATCTGGAGGCTACCAGAAGAGCTTAGAGTCCGAAGAAACTGGAGCAAAAATAGACGCTAAAGAAGAACATATTGCAAATGAGACCAGGGAAACTAGTGGACTGGAGATTCCAAACAATGCCAAACAAGTAAAAGAAGAGGAAGTCACAGAAGACAACCGGTTCTATTATGATAAGCCTGCAGATGGTTTTAGAGAGGAAAAATCATGTCAAATGGGTCAATCAGATGATAATATGAAAGCTGAAGGAAGCGACAACCTACCTAACAATGTTCTTGGGGAACACCCGAACCAGCTGAACGGTATGAAAGATGCTTCGGAATGCTGTGATGATTTGGTTACTGATATTAAAATAGAGGACGTAAGCTTGGAAAGCAAATCAATGGCTAAAGAGGATTCAACTCTAAAGGAAGTTGGTATTGAGAGAGAAGAAACTTTTGCTGGAAAGGAGGGCAGTGCTGGAACAGAATCAGATGCTATTCGAAAGAGTGAAATTAATGAAAAGGATCATGGGAAGGACCAGGATTATGATCTTGCAAGAAGATTTGAGCCCGGGTGTGTTTTTGTGGAGTTTGTTAGAGCAGAAGCCTCTTTAAAGGCAGCACATTGTTTACATGGACGGGCTTTTGAGGATCGTATTGTGACTGTGGAGTATGTTTCACTTGATCATTACAAGGCTCAGTTTCCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0006913 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032239 GO:0032241 GO:0032386 GO:0032388 GO:0032879 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046822 GO:0046824 GO:0046831 GO:0046833 GO:0046907 GO:0048518 GO:0050789 GO:0051049 GO:0051050 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0065007 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

964

Amino Acids

107.58

Weight (kDa)

8.28

Isoelectric Point (pI)

50.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	568 - 635	7.8e-08	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33435
fragaria_vesca	FvH4_4g04160 FvH4_4g04160 FvH4_4g04160
malus_domestica	MD13G1218500.v1.1
prunus_persica	Prupe.1G045200_v2.0.a1 Prupe.1G045200_v2.0.a1
pyrus_communis	pycom13g19340
rosa_chinensis	RchiOBHm_Chr4g0394621 RchiOBHm_Chr4g0394661
rosa_laevigata	RLG00000009679 RLG00000009684
rosa_multiflora	Rmu_sc0005424.1_g000012 Rmu_sc0006945.1_g000040
rosa_roxburghii	Rroxscaffold_5G00339670
rosa_rugosa	Rorug03G0363100.1 Rorug03G0363500.1 Rorug03G0363600.1 Rorug03G0363700.1
rosa_samantha	Rh4AG053300 Rh4AG054000 Rh4BG051200 Rh4BG051700 Rh4CG058500 Rh4DG050200
rosa_wichuraiana	Rw4G004300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1999
AccB1I	GGYRCC	1 cut(s)	1533
AccI	GTMKAC	3 cut(s)	1308, 1322, 1839
AccII	CGCG	1 cut(s)	1658
AciI	CCGC	4 cut(s)	844, 1656, 1658, 1868
AclWI	GGATC	9 cut(s)	243, 284, 297, 835, 848, 1077, 1631, 2712, 2838
AcoI	YGGCCR	2 cut(s)	1167, 1653
AcsI	RAATTY	3 cut(s)	205, 733, 1716
AcuI	CTGAAG	3 cut(s)	672, 2202, 2463
AcyI	GRCGYC	1 cut(s)	1534
AfaI	GTAC	3 cut(s)	183, 1158, 2119
AfeI	AGCGCT	2 cut(s)	79, 491
AfiI	CCNNNNNNNGG	2 cut(s)	807, 2384
AflII	CTTAAG	1 cut(s)	1016
AflIII	ACRYGT	1 cut(s)	1143
AgeI	ACCGGT	1 cut(s)	2358
AhlI	ACTAGT	1 cut(s)	2294
AjiI	CACGTC	1 cut(s)	9
AjnI	CCWGG	6 cut(s)	880, 1393, 2108, 2170, 2285, 2718
AjuI	GAANNNNNNNTTGG	2 cut(s)	1688, 1720
Alw21I	GWGCWC	2 cut(s)	8, 2046
Alw26I	GTCTC	6 cut(s)	547, 627, 762, 801, 1658, 2276
AlwI	GGATC	9 cut(s)	243, 284, 297, 835, 848, 1077, 1631, 2712, 2838
Ama87I	CYCGRG	1 cut(s)	2750
Aor51HI	AGCGCT	2 cut(s)	79, 491
AoxI	GGCC	6 cut(s)	92, 878, 959, 1167, 1286, 1653
ApeKI	GCWGC	5 cut(s)	80, 644, 846, 1481, 2798
ApoI	RAATTY	3 cut(s)	205, 733, 1716
AseI	ATTAAT	1 cut(s)	2694
AsiGI	ACCGGT	1 cut(s)	2358
Asp700I	GAANNNNTTC	1 cut(s)	2079
AspLEI	GCGC	3 cut(s)	80, 492, 1536
AspS9I	GGNCC	5 cut(s)	959, 1264, 1769, 2011, 2716
AsuC2I	CCSGG	2 cut(s)	2751, 2752
AsuHPI	GGTGA	5 cut(s)	795, 976, 978, 1646, 2158
AsuII	TTCGAA	2 cut(s)	729, 2680
AvaI	CYCGRG	1 cut(s)	2750
AvaII	GGWCC	4 cut(s)	1264, 1769, 2011, 2716
BaeGI	GKGCMC	1 cut(s)	814
BalI	TGGCCA	1 cut(s)	1169
BamHI	GGATCC	2 cut(s)	289, 840
BanI	GGYRCC	1 cut(s)	1533
BanII	GRGCYC	1 cut(s)	2751
BarI	GAAGNNNNNNTAC	2 cut(s)	1132, 1164
BbsI	GAAGAC	5 cut(s)	357, 1140, 1365, 1476, 2358
Bbv12I	GWGCWC	2 cut(s)	8, 2046
BbvI	GCAGC	5 cut(s)	67, 631, 858, 1468, 2810
BccI	CCATC	8 cut(s)	721, 951, 1033, 1159, 1490, 1592, 2011, 2378
BceAI	ACGGC	1 cut(s)	1098
BciT130I	CCWGG	6 cut(s)	882, 1395, 2110, 2172, 2287, 2720
BclI	TGATCA	1 cut(s)	2863
BcnI	CCSGG	2 cut(s)	2751, 2752
BcoDI	GTCTC	6 cut(s)	547, 627, 762, 801, 1658, 2276
BcuI	ACTAGT	1 cut(s)	2294
BfaI	CTAG	5 cut(s)	12, 42, 84, 1197, 2295
BfmI	CTRYAG	3 cut(s)	1476, 1908, 2379
BfoI	RGCGCY	3 cut(s)	81, 493, 1537
BfrI	CTTAAG	1 cut(s)	1016
BfuAI	ACCTGC	1 cut(s)	1999
BglII	AGATCT	1 cut(s)	578
BisI	GCNGC	6 cut(s)	81, 645, 847, 1482, 1656, 2799
BlsI	GCNGC	6 cut(s)	82, 646, 848, 1483, 1657, 2800
Bme1390I	CCNGG	8 cut(s)	882, 1395, 2110, 2172, 2287, 2720, 2751, 2752
Bme18I	GGWCC	4 cut(s)	1264, 1769, 2011, 2716
BmeT110I	CYCGRG	1 cut(s)	2750
BmgBI	CACGTC	1 cut(s)	9
BmgT120I	GGNCC	5 cut(s)	959, 1264, 1769, 2011, 2716
BmiI	GGNNCC	4 cut(s)	291, 842, 931, 1535
BmrFI	CCNGG	8 cut(s)	882, 1395, 2110, 2172, 2287, 2720, 2751, 2752
BmsI	GCATC	4 cut(s)	1940, 2185, 2500, 2662
BoxI	GACNNNNGTC	1 cut(s)	1437
BpiI	GAAGAC	5 cut(s)	357, 1140, 1365, 1476, 2358
BplI	GAGNNNNNCTC	2 cut(s)	2033, 2065
BpmI	CTGGAG	3 cut(s)	2226, 2262, 2324
Bpu10I	CCTNAGC	1 cut(s)	119
Bpu14I	TTCGAA	2 cut(s)	729, 2680
BpuEI	CTTGAG	1 cut(s)	2060
BpuMI	CCSGG	2 cut(s)	2751, 2752
BsaBI	GATNNNNATC	1 cut(s)	2727
BsaHI	GRCGYC	1 cut(s)	1534
BsaI	GGTCTC	3 cut(s)	762, 801, 2276
BsaWI	WCCGGW	3 cut(s)	1376, 1465, 2358
BsaXI	ACNNNNNCTCC	2 cut(s)	1884, 1914
Bsc4I	CCNNNNNNNGG	2 cut(s)	807, 2384
Bse118I	RCCGGY	2 cut(s)	961, 2358
Bse1I	ACTGG	4 cut(s)	293, 1636, 2245, 2307
Bse3DI	GCAATG	1 cut(s)	1170
Bse8I	GATNNNNATC	1 cut(s)	2727
BseBI	CCWGG	6 cut(s)	882, 1395, 2110, 2172, 2287, 2720
BseGI	GGATG	5 cut(s)	1025, 1072, 1219, 1603, 1934
BseJI	GATNNNNATC	1 cut(s)	2727
BseLI	CCNNNNNNNGG	2 cut(s)	807, 2384
BseMI	GCAATG	1 cut(s)	1170
BseMII	CTCAG	4 cut(s)	507, 1323, 2073, 2891
BseNI	ACTGG	4 cut(s)	293, 1636, 2245, 2307
BseRI	GAGGAG	1 cut(s)	1309
BseSI	GKGCMC	1 cut(s)	814
BseXI	GCAGC	5 cut(s)	67, 631, 858, 1468, 2810
Bsh1236I	CGCG	1 cut(s)	1658
BshFI	GGCC	6 cut(s)	94, 880, 961, 1169, 1288, 1655
BshNI	GGYRCC	1 cut(s)	1533
BshTI	ACCGGT	1 cut(s)	2358
BsiHKAI	GWGCWC	2 cut(s)	8, 2046
BsiHKCI	CYCGRG	1 cut(s)	2750
BsiSI	CCGG	5 cut(s)	962, 1377, 1466, 2359, 2751
BslFI	GGGAC	1 cut(s)	2188
BslI	CCNNNNNNNGG	2 cut(s)	807, 2384
BsmAI	GTCTC	6 cut(s)	547, 627, 762, 801, 1658, 2276
BsmFI	GGGAC	1 cut(s)	2188
BsmI	GAATGC	3 cut(s)	526, 1252, 2525
BsnI	GGCC	6 cut(s)	94, 880, 961, 1169, 1288, 1655
Bso31I	GGTCTC	3 cut(s)	762, 801, 2276
BsoBI	CYCGRG	1 cut(s)	2750
Bsp119I	TTCGAA	2 cut(s)	729, 2680
Bsp1286I	GDGCHC	4 cut(s)	8, 814, 2046, 2751
Bsp1407I	TGTACA	1 cut(s)	1156
BspACI	CCGC	4 cut(s)	844, 1656, 1658, 1868
BspANI	GGCC	6 cut(s)	94, 880, 961, 1169, 1288, 1655
BspCNI	CTCAG	4 cut(s)	506, 1324, 2072, 2890
BspFNI	CGCG	1 cut(s)	1658
BspLI	GGNNCC	4 cut(s)	291, 842, 931, 1535
BspMAI	CTGCAG	2 cut(s)	1912, 2383
BspMI	ACCTGC	1 cut(s)	1999
BspPI	GGATC	9 cut(s)	243, 284, 297, 835, 848, 1077, 1631, 2712, 2838
BspQI	GCTCTTC	1 cut(s)	2213
BspT104I	TTCGAA	2 cut(s)	729, 2680
BspT107I	GGYRCC	1 cut(s)	1533
BspTI	CTTAAG	1 cut(s)	1016
BspTNI	GGTCTC	3 cut(s)	762, 801, 2276
BsrDI	GCAATG	1 cut(s)	1170
BsrFI	RCCGGY	2 cut(s)	961, 2358
BsrGI	TGTACA	1 cut(s)	1156
BsrI	ACTGG	4 cut(s)	293, 1636, 2245, 2307
BssAI	RCCGGY	2 cut(s)	961, 2358
BssNI	GRCGYC	1 cut(s)	1534
BssT1I	CCWWGG	3 cut(s)	185, 806, 1938
Bst2UI	CCWGG	6 cut(s)	882, 1395, 2110, 2172, 2287, 2720
Bst6I	CTCTTC	4 cut(s)	102, 989, 2213, 2331
BstACI	GRCGYC	1 cut(s)	1534
BstAFI	CTTAAG	1 cut(s)	1016
BstAUI	TGTACA	1 cut(s)	1156
BstBI	TTCGAA	2 cut(s)	729, 2680
BstC8I	GCNNGC	2 cut(s)	279, 2379
BstDEI	CTNAG	8 cut(s)	119, 493, 1239, 1332, 2021, 2059, 2224, 2877
BstDSI	CCRYGG	1 cut(s)	1656
BstENI	CCTNNNNNAGG	1 cut(s)	805
BstF5I	GGATG	5 cut(s)	1025, 1072, 1219, 1603, 1934
BstFNI	CGCG	1 cut(s)	1658
BstH2I	RGCGCY	3 cut(s)	81, 493, 1537
BstHHI	GCGC	3 cut(s)	80, 492, 1536
BstMAI	GTCTC	6 cut(s)	547, 627, 762, 801, 1658, 2276
BstMWI	GCNNNNNNNGC	5 cut(s)	936, 945, 1481, 1916, 2571
BstNI	CCWGG	6 cut(s)	882, 1395, 2110, 2172, 2287, 2720
BstNSI	RCATGY	2 cut(s)	1147, 1866
BstPAI	GACNNNNGTC	1 cut(s)	1437
BstSCI	CCNGG	8 cut(s)	880, 1393, 2108, 2170, 2285, 2718, 2749, 2750
BstSFI	CTRYAG	3 cut(s)	1476, 1908, 2379
BstSLI	GKGCMC	1 cut(s)	814
BstUI	CGCG	1 cut(s)	1658
BstV1I	GCAGC	5 cut(s)	67, 631, 858, 1468, 2810
BstV2I	GAAGAC	5 cut(s)	357, 1140, 1365, 1476, 2358
BstX2I	RGATCY	3 cut(s)	289, 578, 840
BstYI	RGATCY	3 cut(s)	289, 578, 840
BsuRI	GGCC	6 cut(s)	94, 880, 961, 1169, 1288, 1655
BtgI	CCRYGG	1 cut(s)	1656
BtgZI	GCGATG	2 cut(s)	929, 1989
BtrI	CACGTC	1 cut(s)	9
BtsCI	GGATG	5 cut(s)	1025, 1072, 1219, 1603, 1934
BtsI	GCAGTG	2 cut(s)	2051, 2659
BtsIMutI	CAGTG	4 cut(s)	300, 1500, 2051, 2659
BveI	ACCTGC	1 cut(s)	1999
Cac8I	GCNNGC	2 cut(s)	279, 2379
CfoI	GCGC	3 cut(s)	80, 492, 1536
Cfr10I	RCCGGY	2 cut(s)	961, 2358
Cfr13I	GGNCC	5 cut(s)	959, 1264, 1769, 2011, 2716
Cfr42I	CCGCGG	1 cut(s)	1659
Cfr9I	CCCGGG	1 cut(s)	2750
CseI	GACGC	2 cut(s)	1481, 2264
Csp6I	GTAC	3 cut(s)	182, 1157, 2118
CspAI	ACCGGT	1 cut(s)	2358
CviQI	GTAC	3 cut(s)	182, 1157, 2118
DdeI	CTNAG	8 cut(s)	119, 493, 1239, 1332, 2021, 2059, 2224, 2877
DinI	GGCGCC	1 cut(s)	1535
DraI	TTTAAA	1 cut(s)	2793
EaeI	YGGCCR	2 cut(s)	1167, 1653
Eam1104I	CTCTTC	4 cut(s)	102, 989, 2213, 2331
EarI	CTCTTC	4 cut(s)	102, 989, 2213, 2331
Eco130I	CCWWGG	3 cut(s)	185, 806, 1938
Eco147I	AGGCCT	2 cut(s)	94, 880
Eco24I	GRGCYC	1 cut(s)	2751
Eco31I	GGTCTC	3 cut(s)	762, 801, 2276
Eco32I	GATATC	1 cut(s)	855
Eco47I	GGWCC	4 cut(s)	1264, 1769, 2011, 2716
Eco47III	AGCGCT	2 cut(s)	79, 491
Eco57I	CTGAAG	3 cut(s)	672, 2202, 2463
Eco88I	CYCGRG	1 cut(s)	2750
EcoNI	CCTNNNNNAGG	1 cut(s)	805
EcoO109I	RGGNCCY	1 cut(s)	2011
EcoRII	CCWGG	6 cut(s)	880, 1393, 2108, 2170, 2285, 2718
EcoRV	GATATC	1 cut(s)	855
EcoT14I	CCWWGG	3 cut(s)	185, 806, 1938
EcoT22I	ATGCAT	1 cut(s)	1412
EcoT38I	GRGCYC	1 cut(s)	2751
EgeI	GGCGCC	1 cut(s)	1535
EheI	GGCGCC	1 cut(s)	1535
ErhI	CCWWGG	3 cut(s)	185, 806, 1938
FaqI	GGGAC	1 cut(s)	2188
FauI	CCCGC	1 cut(s)	1861
FauNDI	CATATG	1 cut(s)	1963
FbaI	TGATCA	1 cut(s)	2863
FblI	GTMKAC	3 cut(s)	1308, 1322, 1839
Fnu4HI	GCNGC	6 cut(s)	81, 645, 847, 1482, 1656, 2799
FokI	GGATG	5 cut(s)	1012, 1059, 1206, 1610, 1921
FriOI	GRGCYC	1 cut(s)	2751
Fsp4HI	GCNGC	6 cut(s)	81, 645, 847, 1482, 1656, 2799
FspBI	CTAG	5 cut(s)	12, 42, 84, 1197, 2295
GlaI	GCGC	3 cut(s)	79, 491, 1535
GluI	GCNGC	6 cut(s)	81, 645, 847, 1482, 1656, 2799
GsuI	CTGGAG	3 cut(s)	2226, 2262, 2324
HaeII	RGCGCY	3 cut(s)	81, 493, 1537
HaeIII	GGCC	6 cut(s)	94, 880, 961, 1169, 1288, 1655
HapII	CCGG	5 cut(s)	962, 1377, 1466, 2359, 2751
HgaI	GACGC	2 cut(s)	1481, 2264
HhaI	GCGC	3 cut(s)	80, 492, 1536
Hin1I	GRCGYC	1 cut(s)	1534
Hin6I	GCGC	3 cut(s)	78, 490, 1534
HinP1I	GCGC	3 cut(s)	78, 490, 1534
HincII	GTYRAC	2 cut(s)	1258, 1798
HindII	GTYRAC	2 cut(s)	1258, 1798
HindIII	AAGCTT	3 cut(s)	397, 2018, 2563
HpaII	CCGG	5 cut(s)	962, 1377, 1466, 2359, 2751
HphI	GGTGA	5 cut(s)	795, 976, 978, 1646, 2158
Hpy166II	GTNNAC	7 cut(s)	1258, 1309, 1323, 1798, 1840, 2300, 2810
Hpy188III	TCNNGA	6 cut(s)	309, 1595, 1640, 2039, 2084, 2205
Hpy8I	GTNNAC	7 cut(s)	1258, 1309, 1323, 1798, 1840, 2300, 2810
HpyAV	CCTTC	6 cut(s)	292, 397, 1678, 1771, 2438, 2707
HpyCH4IV	ACGT	2 cut(s)	8, 2559
HpyF10VI	GCNNNNNNNGC	5 cut(s)	936, 945, 1481, 1916, 2571
HpyF3I	CTNAG	8 cut(s)	119, 493, 1239, 1332, 2021, 2059, 2224, 2877
HpySE526I	ACGT	2 cut(s)	8, 2559
Hsp92I	GRCGYC	1 cut(s)	1534
HspAI	GCGC	3 cut(s)	78, 490, 1534
KasI	GGCGCC	1 cut(s)	1533
Ksp22I	TGATCA	1 cut(s)	2863
KspI	CCGCGG	1 cut(s)	1659
LguI	GCTCTTC	1 cut(s)	2213
LmnI	GCTCC	2 cut(s)	935, 2243
Lsp1109I	GCAGC	5 cut(s)	67, 631, 858, 1468, 2810
LweI	GCATC	4 cut(s)	1940, 2185, 2500, 2662
MaeI	CTAG	5 cut(s)	12, 42, 84, 1197, 2295
MaeII	ACGT	2 cut(s)	8, 2559
MaeIII	GTNAC	5 cut(s)	1139, 1849, 2344, 2536, 2839
MflI	RGATCY	3 cut(s)	289, 578, 840
MhlI	GDGCHC	4 cut(s)	8, 814, 2046, 2751
MlsI	TGGCCA	1 cut(s)	1169
MluNI	TGGCCA	1 cut(s)	1169
Mly113I	GGCGCC	1 cut(s)	1534
MlyI	GAGTC	5 cut(s)	233, 1015, 1016, 1253, 2237
MmeI	TCCRAC	2 cut(s)	1291, 2020
Mox20I	TGGCCA	1 cut(s)	1169
Mph1103I	ATGCAT	1 cut(s)	1412
MroXI	GAANNNNTTC	1 cut(s)	2079
MscI	TGGCCA	1 cut(s)	1169
MslI	CAYNNNNRTG	1 cut(s)	1405
Msp20I	TGGCCA	1 cut(s)	1169
MspA1I	CMGCKG	2 cut(s)	1658, 2494
MspCI	CTTAAG	1 cut(s)	1016
MspI	CCGG	5 cut(s)	962, 1377, 1466, 2359, 2751
MspR9I	CCNGG	8 cut(s)	882, 1395, 2110, 2172, 2287, 2720, 2751, 2752
Mva1269I	GAATGC	3 cut(s)	526, 1252, 2525
MvaI	CCWGG	6 cut(s)	882, 1395, 2110, 2172, 2287, 2720
MvnI	CGCG	1 cut(s)	1658
MwoI	GCNNNNNNNGC	5 cut(s)	936, 945, 1481, 1916, 2571
NarI	GGCGCC	1 cut(s)	1534
NciI	CCSGG	2 cut(s)	2751, 2752
NdeI	CATATG	1 cut(s)	1963
NlaIV	GGNNCC	4 cut(s)	291, 842, 931, 1535
NmeAIII	GCCGAG	1 cut(s)	1264
NmuCI	GTSAC	2 cut(s)	2344, 2839
NsiI	ATGCAT	1 cut(s)	1412
NspI	RCATGY	2 cut(s)	1147, 1866
NspV	TTCGAA	2 cut(s)	729, 2680
PasI	CCCWGGG	1 cut(s)	2171
PceI	AGGCCT	2 cut(s)	94, 880
PciI	ACATGT	1 cut(s)	1143
PciSI	GCTCTTC	1 cut(s)	2213
PctI	GAATGC	3 cut(s)	526, 1252, 2525
PdmI	GAANNNNTTC	1 cut(s)	2079
PfeI	GAWTC	9 cut(s)	191, 512, 659, 893, 1349, 1688, 2308, 2594, 2666
PflFI	GACNNNGTC	1 cut(s)	1262
PinAI	ACCGGT	1 cut(s)	2358
PkrI	GCNGC	6 cut(s)	82, 646, 848, 1483, 1657, 2800
PleI	GAGTC	5 cut(s)	232, 1015, 1015, 1253, 2236
PluTI	GGCGCC	1 cut(s)	1537
PpsI	GAGTC	5 cut(s)	232, 1015, 1015, 1253, 2236
PpuMI	RGGWCCY	1 cut(s)	2011
PscI	ACATGT	1 cut(s)	1143
PshAI	GACNNNNGTC	1 cut(s)	1437
PshBI	ATTAAT	1 cut(s)	2694
Psp5II	RGGWCCY	1 cut(s)	2011
Psp6I	CCWGG	6 cut(s)	880, 1393, 2108, 2170, 2285, 2718
PspGI	CCWGG	6 cut(s)	880, 1393, 2108, 2170, 2285, 2718
PspN4I	GGNNCC	4 cut(s)	291, 842, 931, 1535
PspPI	GGNCC	5 cut(s)	959, 1264, 1769, 2011, 2716
PspPPI	RGGWCCY	1 cut(s)	2011
PsrI	GAACNNNNNNTAC	2 cut(s)	1299, 1331
PstI	CTGCAG	2 cut(s)	1912, 2383
PsuI	RGATCY	3 cut(s)	289, 578, 840
PsyI	GACNNNGTC	1 cut(s)	1262
PvuII	CAGCTG	1 cut(s)	2494
RsaI	GTAC	3 cut(s)	183, 1158, 2119
RsaNI	GTAC	3 cut(s)	182, 1157, 2118
RseI	CAYNNNNRTG	1 cut(s)	1405
SacII	CCGCGG	1 cut(s)	1659
SapI	GCTCTTC	1 cut(s)	2213
SatI	GCNGC	6 cut(s)	81, 645, 847, 1482, 1656, 2799
Sau96I	GGNCC	5 cut(s)	959, 1264, 1769, 2011, 2716
SchI	GAGTC	5 cut(s)	233, 1015, 1016, 1253, 2237
ScrFI	CCNGG	8 cut(s)	882, 1395, 2110, 2172, 2287, 2720, 2751, 2752
SduI	GDGCHC	4 cut(s)	8, 814, 2046, 2751
SfaNI	GCATC	4 cut(s)	1940, 2185, 2500, 2662
SfcI	CTRYAG	3 cut(s)	1476, 1908, 2379
SfoI	GGCGCC	1 cut(s)	1535
Sfr303I	CCGCGG	1 cut(s)	1659
SfuI	TTCGAA	2 cut(s)	729, 2680
SgrBI	CCGCGG	1 cut(s)	1659
SinI	GGWCC	4 cut(s)	1264, 1769, 2011, 2716
SmaI	CCCGGG	1 cut(s)	2752
SmiMI	CAYNNNNRTG	1 cut(s)	1405
SmlI	CTYRAG	2 cut(s)	1016, 2039
SmoI	CTYRAG	2 cut(s)	1016, 2039
SpeI	ACTAGT	1 cut(s)	2294
SseBI	AGGCCT	2 cut(s)	94, 880
SsiI	CCGC	4 cut(s)	844, 1656, 1658, 1868
SspDI	GGCGCC	1 cut(s)	1533
SspMI	CTAG	5 cut(s)	12, 42, 84, 1197, 2295
StuI	AGGCCT	2 cut(s)	94, 880
StyD4I	CCNGG	8 cut(s)	880, 1393, 2108, 2170, 2285, 2718, 2749, 2750
StyI	CCWWGG	3 cut(s)	185, 806, 1938
TaiI	ACGT	2 cut(s)	11, 2562
TaqI	TCGA	3 cut(s)	729, 1109, 2680
TaqII	GACCGA	1 cut(s)	1252
TatI	WGTACW	1 cut(s)	1156
TauI	GCSGC	1 cut(s)	1658
TfiI	GAWTC	9 cut(s)	191, 512, 659, 893, 1349, 1688, 2308, 2594, 2666
TscAI	CASTG	4 cut(s)	300, 1507, 2058, 2659
TseFI	GTSAC	2 cut(s)	2344, 2839
TseI	GCWGC	5 cut(s)	80, 644, 846, 1481, 2798
Tsp45I	GTSAC	2 cut(s)	2344, 2839
TspGWI	ACGGA	2 cut(s)	362, 1308
TspMI	CCCGGG	1 cut(s)	2750
TspRI	CASTG	4 cut(s)	300, 1507, 2058, 2659
Tth111I	GACNNNGTC	1 cut(s)	1262
Vha464I	CTTAAG	1 cut(s)	1016
VpaK11BI	GGWCC	4 cut(s)	1264, 1769, 2011, 2716
VspI	ATTAAT	1 cut(s)	2694
XagI	CCTNNNNNAGG	1 cut(s)	805
XapI	RAATTY	3 cut(s)	205, 733, 1716
XceI	RCATGY	2 cut(s)	1147, 1866
XcmI	CCANNNNNNNNNTGG	1 cut(s)	950
XmaI	CCCGGG	1 cut(s)	2750
XmiI	GTMKAC	3 cut(s)	1308, 1322, 1839
XmnI	GAANNNNTTC	1 cut(s)	2079
XspI	CTAG	5 cut(s)	12, 42, 84, 1197, 2295
Zsp2I	ATGCAT	1 cut(s)	1412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.