Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006750

Physical Location & Seq

Genomic Coordinates Forward (+)

11265054 .. 11274637

Gene Structure 9584 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG058500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2763 bp

ATGAGCACATCATCTAGTCGGCGGCATGAAAAGAAAGTGCATGGCCACGACGAAGAAAGTGCCGCTAGGACAAGGCCTTTCGGCTATGAAGAGATTATGCTTAGGAGGAAAGATAAGAAGTTGTGTGATAATGTTGTGGCGGAAGCGGTTGATTTAGGGGATGTACCGGGGGAAGGTAGTGTCGAAAATGTTTCAGAGGCTTTTGAATCCAAAAGGGGTGAGAGACGGCATAAAGATTTGGCCCCTGTTGTTGAAAAGCCTTTGTCGGAGGAGAGAGTGAAGGAAAGCTCCAGAAAGAAAGAAACGTATAGTTCTAAGAGTACTAAAACGGAAGACGATGTTGTTAAAGGGAAAGTTAGAAGAAGCAATGAGTCGGAGAGCTTGAAGGATAAGCCAAAGAAAGATACAAGGAGTGAAGCTAGAGGGGACAAAACTGACAAACAAGTACATGGTAGGAGGAAAATTGACAAGGACTTGGTTGATGAGTCTGTAAAGAAGCAGTCAAGAGATTATTCAACAAGAAAAGAAAGACATTTGGACCAAAATAGAGGGGAACATGAAAGAGAAACCAAGAGAAAATACCAACACGAAAATGCTGACAAAATCAGAGACAGAAATGCTGCAAAGAAACATGATTCAGGAAAGCTTCGCGCTTTAGAAATTTCAGAGAGAAAGGAAAGGACAGAATCATCAAAATCACGCTTTGAAGAATCAAGACACAAAAGGGGAAGATCGAGGAGTAGAGACCGCGCGGATAGACATAGGTTTAGTTCTCGGTCACCAAGGGCACACAAACATACATTAAATAATTTGGGGCCTCGCAGCGATATATCATCATATTCTCCCAAAGATAGGTCTGGAAGACAGCAGTTGGATATTGATAGTAGCAGAGTGTCTACTAATGGCTCAAGCAGCCACTATCAGCGACATGGTGAGTCTGCGAATAGACTTGGTGGCTATTCCCCTAGGAAGAGAAGGACTGAGTCTGCTATTAAGACTCCATCCCCACCCGATCGTTCACCTGAAAAGAAAAATGCCAGGTGGGATCTCCCCCATGCATCAACTGACAAGGCATTGTCTAGTTTGGTTGCTTCTCGTTTTCAGTCATCAAACAGTAATGTATCCTCAAATGTACATGGGATGACCATTGCTGTTGCTGTTGCCTCAACCGCCACAACATCTATTCCTGGAGTTTCTCCCAATTCTATATTGACTAAGAAGAATGCTTCCGTTGACTCCGTGCAATTAACACAAGCTACGCGGCGTATGAGGAGGCTTCATGTAGAAAATATTCCATCTACAACCTCTGAAAACACTTTGGTAGAATCTCTTAATAAATTTTTGTTGTCTTCGGGCGTAAATCATATTCAAGGAACACAACCCTGCATCAGTTGTGTGATTAACAAAGAGAAGGGGCAAGCTCTTGTGGAGTTTCTTACACCTCAAGATGCTTTGGCTGCTCTGTCATTTGATGGCAGTTCATTCTTTGGTTCTATTCTCAAAATCAGGCGCCCTAAGGACTTTGTTGACATTGCTACTGGTGACCCCGAGAAATCAGTGGCTGCAGCTGAGAGTATTGAGACAATAAGTGATGTTGTGAACGATTCTCCTAACAAGATTTTCATTGGTGGGATATCAAAGTCTCTTTCCTCAGAAACGCTTCTGGAAATCGTTAGTGTCTTTGGACCTTTGAAGGCATACCATTTTGAGGCCAATGAGGAACTTAATGAACCATGTGCTTTTCTAGAGTATGTCGACCAGTCAGTTACTCTCAAAGCTTGTGCGGGTCTGAATGGTATAAAATTAGGAGGGAGAGTGCTAACTGTGGTTCAGGCAATTCGTAATGGATCATCCATGGTAAATAGTGGAAATGCATCACTCTATGAGATCCCAGATCATGCAAAGCCGCTTCTCAAACAACCTTCACATATCCTGAAGCTTAGAAATGTGTTCAATCTGGAGCACATGTCATCACTGTCTGAACAAGAGATTGAAGAAGTTCTGGAAGATGTGCGATTAGAATGTGCCAGGTTTGGCATGGTTAAATCTGTAAAGATTGTCAAGCATGCAAATAATCACATTGTCACCACTAGAGCGTGTGAAGCTGTCAATGATGCAGAATCTGGTGGGCACTGGCAAAATTTATGTTCTGAAGAAAAAGCAGCAAAAACAGAGACTTTGGACGAACATATTGATAATGACGGCAAGGAAACGAGTGGAGTGAAACTTACAGGGGAGCTTAAAGAAGATGAAGTCCCAGAAAGTAATTGCTTTGGTTATGATGCAGGTGATTTTGTAGAGGACAAGTCATGTCAAATGGGCCAACCAGATAAAGATATTGAAGTCCAAGGAAGCAATGACTTACCTAATAGGGATCCCGAAGAACTCACCAACCTGCCAAACAGCATGAAAGATGCGTCAGAGTGTTATGATGATAAAACTCCTGAAGTTACAACAGTAGAGAGTTCTATTATAGAGGAAGTTGATGGTGAGAAACAACAGACTTTTGCTGGAACAGATGACAATGTGGGAACAGAAACAGACTCTATTCTGGAGAGTGGAACTAATGAGCAGCATAATGGGAAGGAGAATGATTTTGATCTTGGAAGCATATTCGAGCCTGGGTGTGTCTTTGTGGAGTTTGGGAGATCAGAAGCCTCTTGGATGGCAGCACATTGTTTACATGGACGAGTTTTTGAGGATCGGATTGTGACAGTGGAGTATATCGCACCTGATCATTACAGGGCTAAATTTTTAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0006913 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032239 GO:0032241 GO:0032386 GO:0032388 GO:0032879 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046822 GO:0046824 GO:0046831 GO:0046833 GO:0046907 GO:0048518 GO:0050789 GO:0051049 GO:0051050 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0065007 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

920

Amino Acids

102.49

Weight (kDa)

6.37

Isoelectric Point (pI)

56.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	540 - 607	6.9e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33435
fragaria_vesca	FvH4_4g04160 FvH4_4g04160 FvH4_4g04160
malus_domestica	MD13G1218500.v1.1
prunus_persica	Prupe.1G045200_v2.0.a1 Prupe.1G045200_v2.0.a1
pyrus_communis	pycom13g19340
rosa_chinensis	RchiOBHm_Chr4g0394621 RchiOBHm_Chr4g0394661
rosa_laevigata	RLG00000009679 RLG00000009684
rosa_multiflora	Rmu_sc0005424.1_g000012 Rmu_sc0006945.1_g000040
rosa_roxburghii	Rroxscaffold_5G00339670
rosa_rugosa	Rorug03G0363100.1 Rorug03G0363500.1 Rorug03G0363600.1 Rorug03G0363700.1
rosa_samantha	Rh4AG053300 Rh4AG054000 Rh4BG051200 Rh4BG051700 Rh4CG058500 Rh4DG050200
rosa_wichuraiana	Rw4G004300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2276
Acc36I	ACCTGC	2 cut(s)	2276, 2403
AccB1I	GGYRCC	1 cut(s)	1509
AccI	GTMKAC	2 cut(s)	896, 1755
AccII	CGCG	4 cut(s)	651, 750, 752, 1261
AclWI	GGATC	6 cut(s)	1053, 1855, 1882, 2369, 2382, 2709
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	4 cut(s)	660, 1337, 2140, 2750
AcuI	CTGAAG	3 cut(s)	1955, 2172, 2466
AcyI	GRCGYC	1 cut(s)	1510
AfaI	GTAC	4 cut(s)	165, 322, 447, 1134
AfiI	CCNNNNNNNGG	3 cut(s)	173, 852, 1708
AflIII	ACRYGT	1 cut(s)	1965
AjnI	CCWGG	4 cut(s)	1037, 1186, 2027, 2620
Alw21I	GWGCWC	2 cut(s)	8, 1965
Alw26I	GTCTC	6 cut(s)	217, 603, 738, 1574, 1647, 2168
AlwI	GGATC	6 cut(s)	1053, 1855, 1882, 2369, 2382, 2709
AlwNI	CAGNNNCTG	2 cut(s)	1562, 2123
Ama87I	CYCGRG	1 cut(s)	1547
AoxI	GGCC	6 cut(s)	43, 74, 240, 815, 1710, 2320
ApeKI	GCWGC	9 cut(s)	620, 822, 912, 1457, 1562, 1565, 2162, 2572, 2669
ApoI	RAATTY	4 cut(s)	660, 1337, 2140, 2750
Asp700I	GAANNNNTTC	3 cut(s)	1290, 1659, 1998
AspA2I	CCTAGG	1 cut(s)	965
AspLEI	GCGC	3 cut(s)	653, 752, 1512
AspS9I	GGNCC	5 cut(s)	241, 538, 815, 1685, 2320
AsuC2I	CCSGG	1 cut(s)	168
AsuHPI	GGTGA	9 cut(s)	230, 771, 944, 1011, 1553, 2077, 2300, 2380, 2501
AvaI	CYCGRG	1 cut(s)	1547
AvaII	GGWCC	2 cut(s)	538, 1685
AvrII	CCTAGG	1 cut(s)	965
AxyI	CCTNAGG	1 cut(s)	1515
BaeGI	GKGCMC	2 cut(s)	790, 2133
BalI	TGGCCA	1 cut(s)	45
BamHI	GGATCC	1 cut(s)	2374
BanI	GGYRCC	1 cut(s)	1509
BbsI	GAAGAC	3 cut(s)	339, 868, 1341
Bbv12I	GWGCWC	2 cut(s)	8, 1965
BbvI	GCAGC	9 cut(s)	607, 834, 924, 1444, 1549, 1577, 2174, 2584, 2681
BccI	CCATC	5 cut(s)	1009, 1303, 1466, 2480, 2659
BceAI	ACGGC	2 cut(s)	242, 2218
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BciT130I	CCWGG	4 cut(s)	1039, 1188, 2029, 2622
BciVI	GTATCC	1 cut(s)	1132
BclI	TGATCA	1 cut(s)	2734
BcnI	CCSGG	1 cut(s)	168
BcoDI	GTCTC	6 cut(s)	217, 603, 738, 1574, 1647, 2168
BfaI	CTAG	7 cut(s)	15, 66, 420, 966, 1080, 1745, 2091
BfmI	CTRYAG	1 cut(s)	1563
BfoI	RGCGCY	1 cut(s)	1513
BfuAI	ACCTGC	2 cut(s)	2276, 2403
BfuI	GTATCC	1 cut(s)	1132
BlnI	CCTAGG	1 cut(s)	965
BmcAI	AGTACT	1 cut(s)	322
Bme1390I	CCNGG	5 cut(s)	168, 1039, 1188, 2029, 2622
Bme18I	GGWCC	2 cut(s)	538, 1685
BmeT110I	CYCGRG	1 cut(s)	1547
BmgT120I	GGNCC	5 cut(s)	241, 538, 815, 1685, 2320
BmiI	GGNNCC	4 cut(s)	243, 816, 1511, 2376
BmrFI	CCNGG	5 cut(s)	168, 1039, 1188, 2029, 2622
BmsI	GCATC	7 cut(s)	1067, 1395, 1438, 1883, 2104, 2272, 2404
BpiI	GAAGAC	3 cut(s)	339, 868, 1341
BpmI	CTGGAG	4 cut(s)	274, 1209, 1979, 2573
Bpu10I	CCTNAGC	1 cut(s)	101
BpuEI	CTTGAG	2 cut(s)	892, 1428
BpuMI	CCSGG	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	2598
BsaHI	GRCGYC	1 cut(s)	1510
BsaI	GGTCTC	1 cut(s)	738
BsaJI	CCNNGG	6 cut(s)	167, 782, 965, 1854, 2347, 2621
BsaXI	ACNNNNNCTCC	4 cut(s)	1800, 1830, 1952, 1982
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 852, 1708
Bse1I	ACTGG	3 cut(s)	1543, 1759, 2138
Bse21I	CCTNAGG	1 cut(s)	1515
Bse3DI	GCAATG	4 cut(s)	373, 1146, 1530, 2362
Bse8I	GATNNNNATC	1 cut(s)	2598
BseBI	CCWGG	4 cut(s)	1039, 1188, 2029, 2622
BseDI	CCNNGG	6 cut(s)	167, 782, 965, 1854, 2347, 2621
BseGI	GGATG	5 cut(s)	166, 1001, 1146, 1850, 2670
BseJI	GATNNNNATC	1 cut(s)	2598
BseLI	CCNNNNNNNGG	3 cut(s)	173, 852, 1708
BseMI	GCAATG	4 cut(s)	373, 1146, 1530, 2362
BseMII	CTCAG	3 cut(s)	972, 1560, 1665
BseNI	ACTGG	3 cut(s)	1543, 1759, 2138
BseRI	GAGGAG	3 cut(s)	284, 751, 1285
BseSI	GKGCMC	2 cut(s)	790, 2133
BseXI	GCAGC	9 cut(s)	607, 834, 924, 1444, 1549, 1577, 2174, 2584, 2681
Bsh1236I	CGCG	4 cut(s)	651, 750, 752, 1261
Bsh1285I	CGRYCG	1 cut(s)	1015
BshFI	GGCC	6 cut(s)	45, 76, 242, 817, 1712, 2322
BshNI	GGYRCC	1 cut(s)	1509
BsiEI	CGRYCG	1 cut(s)	1015
BsiHKAI	GWGCWC	2 cut(s)	8, 1965
BsiHKCI	CYCGRG	1 cut(s)	1547
BsiSI	CCGG	1 cut(s)	167
BslFI	GGGAC	2 cut(s)	440, 2240
BslI	CCNNNNNNNGG	3 cut(s)	173, 852, 1708
BsmAI	GTCTC	6 cut(s)	217, 603, 738, 1574, 1647, 2168
BsmBI	CGTCTC	1 cut(s)	217
BsmFI	GGGAC	2 cut(s)	440, 2240
BsmI	GAATGC	1 cut(s)	1228
BsnI	GGCC	6 cut(s)	45, 76, 242, 817, 1712, 2322
Bso31I	GGTCTC	1 cut(s)	738
BsoBI	CYCGRG	1 cut(s)	1547
Bsp1286I	GDGCHC	4 cut(s)	8, 790, 1965, 2133
Bsp1407I	TGTACA	1 cut(s)	1132
Bsp19I	CCATGG	1 cut(s)	1854
BspANI	GGCC	6 cut(s)	45, 76, 242, 817, 1712, 2322
BspCNI	CTCAG	3 cut(s)	973, 1561, 1664
BspFNI	CGCG	4 cut(s)	651, 750, 752, 1261
BspLI	GGNNCC	4 cut(s)	243, 816, 1511, 2376
BspMAI	CTGCAG	1 cut(s)	1567
BspMI	ACCTGC	2 cut(s)	2276, 2403
BspPI	GGATC	6 cut(s)	1053, 1855, 1882, 2369, 2382, 2709
BspT107I	GGYRCC	1 cut(s)	1509
BspTNI	GGTCTC	1 cut(s)	738
BsrDI	GCAATG	4 cut(s)	373, 1146, 1530, 2362
BsrGI	TGTACA	1 cut(s)	1132
BsrI	ACTGG	3 cut(s)	1543, 1759, 2138
BssECI	CCNNGG	6 cut(s)	167, 782, 965, 1854, 2347, 2621
BssNI	GRCGYC	1 cut(s)	1510
BssT1I	CCWWGG	4 cut(s)	782, 965, 1854, 2347
Bst2UI	CCWGG	4 cut(s)	1039, 1188, 2029, 2622
Bst4CI	ACNGT	5 cut(s)	1115, 1825, 1977, 2458, 2716
Bst6I	CTCTTC	2 cut(s)	84, 965
BstACI	GRCGYC	1 cut(s)	1510
BstAUI	TGTACA	1 cut(s)	1132
BstC8I	GCNNGC	2 cut(s)	1419, 2067
BstDEI	CTNAG	8 cut(s)	101, 315, 981, 1215, 1515, 1569, 1651, 1940
BstDSI	CCRYGG	1 cut(s)	1854
BstEII	GGTNACC	2 cut(s)	777, 1541
BstF5I	GGATG	5 cut(s)	166, 1001, 1146, 1850, 2670
BstFNI	CGCG	4 cut(s)	651, 750, 752, 1261
BstH2I	RGCGCY	1 cut(s)	1513
BstHHI	GCGC	3 cut(s)	653, 752, 1512
BstMAI	GTCTC	6 cut(s)	217, 603, 738, 1574, 1647, 2168
BstMCI	CGRYCG	1 cut(s)	1015
BstMWI	GCNNNNNNNGC	4 cut(s)	912, 1169, 1457, 2102
BstNI	CCWGG	4 cut(s)	1039, 1188, 2029, 2622
BstNSI	RCATGY	2 cut(s)	1969, 2069
BstPI	GGTNACC	2 cut(s)	777, 1541
BstSCI	CCNGG	5 cut(s)	166, 1037, 1186, 2027, 2620
BstSFI	CTRYAG	1 cut(s)	1563
BstSLI	GKGCMC	2 cut(s)	790, 2133
BstUI	CGCG	4 cut(s)	651, 750, 752, 1261
BstV1I	GCAGC	9 cut(s)	607, 834, 924, 1444, 1549, 1577, 2174, 2584, 2681
BstV2I	GAAGAC	3 cut(s)	339, 868, 1341
BstX2I	RGATCY	3 cut(s)	1045, 1887, 2374
BstYI	RGATCY	3 cut(s)	1045, 1887, 2374
Bsu36I	CCTNAGG	1 cut(s)	1515
BsuI	GTATCC	1 cut(s)	1132
BsuRI	GGCC	6 cut(s)	45, 76, 242, 817, 1712, 2322
BtgI	CCRYGG	1 cut(s)	1854
BtsCI	GGATG	5 cut(s)	166, 1001, 1146, 1850, 2670
BtsIMutI	CAGTG	4 cut(s)	1563, 1973, 2131, 2721
BveI	ACCTGC	2 cut(s)	2276, 2403
Cac8I	GCNNGC	2 cut(s)	1419, 2067
CaiI	CAGNNNCTG	2 cut(s)	1562, 2123
CfoI	GCGC	3 cut(s)	653, 752, 1512
Cfr13I	GGNCC	5 cut(s)	241, 538, 815, 1685, 2320
CseI	GACGC	1 cut(s)	2406
Csp6I	GTAC	4 cut(s)	164, 321, 446, 1133
CviQI	GTAC	4 cut(s)	164, 321, 446, 1133
DdeI	CTNAG	8 cut(s)	101, 315, 981, 1215, 1515, 1569, 1651, 1940
DinI	GGCGCC	1 cut(s)	1511
DraI	TTTAAA	1 cut(s)	2757
EaeI	YGGCCR	1 cut(s)	43
Eam1104I	CTCTTC	2 cut(s)	84, 965
EarI	CTCTTC	2 cut(s)	84, 965
EciI	GGCGGA	1 cut(s)	155
Eco130I	CCWWGG	4 cut(s)	782, 965, 1854, 2347
Eco147I	AGGCCT	1 cut(s)	76
Eco31I	GGTCTC	1 cut(s)	738
Eco32I	GATATC	1 cut(s)	1635
Eco47I	GGWCC	2 cut(s)	538, 1685
Eco57I	CTGAAG	3 cut(s)	1955, 2172, 2466
Eco81I	CCTNAGG	1 cut(s)	1515
Eco88I	CYCGRG	1 cut(s)	1547
Eco91I	GGTNACC	2 cut(s)	777, 1541
EcoO109I	RGGNCCY	1 cut(s)	815
EcoO65I	GGTNACC	2 cut(s)	777, 1541
EcoRII	CCWGG	4 cut(s)	1037, 1186, 2027, 2620
EcoRV	GATATC	1 cut(s)	1635
EcoT14I	CCWWGG	4 cut(s)	782, 965, 1854, 2347
EcoT22I	ATGCAT	2 cut(s)	1060, 1876
EgeI	GGCGCC	1 cut(s)	1511
EheI	GGCGCC	1 cut(s)	1511
ErhI	CCWWGG	4 cut(s)	782, 965, 1854, 2347
Esp3I	CGTCTC	1 cut(s)	217
FaqI	GGGAC	2 cut(s)	440, 2240
FauI	CCCGC	1 cut(s)	1777
FbaI	TGATCA	1 cut(s)	2734
FblI	GTMKAC	2 cut(s)	896, 1755
FokI	GGATG	5 cut(s)	173, 988, 1153, 1837, 2677
FspBI	CTAG	7 cut(s)	15, 66, 420, 966, 1080, 1745, 2091
GlaI	GCGC	3 cut(s)	652, 751, 1511
GsuI	CTGGAG	4 cut(s)	274, 1209, 1979, 2573
HaeII	RGCGCY	1 cut(s)	1513
HaeIII	GGCC	6 cut(s)	45, 76, 242, 817, 1712, 2322
HapII	CCGG	1 cut(s)	167
HgaI	GACGC	1 cut(s)	2406
HhaI	GCGC	3 cut(s)	653, 752, 1512
Hin1I	GRCGYC	1 cut(s)	1510
Hin6I	GCGC	3 cut(s)	651, 750, 1510
HinP1I	GCGC	3 cut(s)	651, 750, 1510
HincII	GTYRAC	3 cut(s)	1234, 1528, 1756
HindII	GTYRAC	3 cut(s)	1234, 1528, 1756
HindIII	AAGCTT	3 cut(s)	644, 1776, 1937
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	9 cut(s)	230, 771, 944, 1011, 1553, 2077, 2300, 2380, 2501
Hpy166II	GTNNAC	7 cut(s)	897, 1019, 1234, 1528, 1600, 1756, 2681
Hpy8I	GTNNAC	7 cut(s)	897, 1019, 1234, 1528, 1600, 1756, 2681
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	8 cut(s)	167, 274, 379, 969, 1405, 1687, 1932, 2578
HpyCH4III	ACNGT	5 cut(s)	1115, 1825, 1977, 2458, 2716
HpyCH4IV	ACGT	1 cut(s)	305
HpyF10VI	GCNNNNNNNGC	4 cut(s)	912, 1169, 1457, 2102
HpyF3I	CTNAG	8 cut(s)	101, 315, 981, 1215, 1515, 1569, 1651, 1940
HpySE526I	ACGT	1 cut(s)	305
Hsp92I	GRCGYC	1 cut(s)	1510
HspAI	GCGC	3 cut(s)	651, 750, 1510
KasI	GGCGCC	1 cut(s)	1509
Ksp22I	TGATCA	1 cut(s)	2734
LmnI	GCTCC	3 cut(s)	293, 1960, 2236
Lsp1109I	GCAGC	9 cut(s)	607, 834, 924, 1444, 1549, 1577, 2174, 2584, 2681
LweI	GCATC	7 cut(s)	1067, 1395, 1438, 1883, 2104, 2272, 2404
MaeI	CTAG	7 cut(s)	15, 66, 420, 966, 1080, 1745, 2091
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	6 cut(s)	777, 1541, 1765, 2083, 2449, 2710
MflI	RGATCY	3 cut(s)	1045, 1887, 2374
MhlI	GDGCHC	4 cut(s)	8, 790, 1965, 2133
MlsI	TGGCCA	1 cut(s)	45
MluNI	TGGCCA	1 cut(s)	45
Mly113I	GGCGCC	1 cut(s)	1510
MlyI	GAGTC	7 cut(s)	380, 494, 944, 991, 992, 1229, 2537
MmeI	TCCRAC	3 cut(s)	246, 354, 852
Mox20I	TGGCCA	1 cut(s)	45
Mph1103I	ATGCAT	2 cut(s)	1060, 1876
MroXI	GAANNNNTTC	3 cut(s)	1290, 1659, 1998
MscI	TGGCCA	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	591
Msp20I	TGGCCA	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	1568
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	5 cut(s)	168, 1039, 1188, 2029, 2622
Mva1269I	GAATGC	1 cut(s)	1228
MvaI	CCWGG	4 cut(s)	1039, 1188, 2029, 2622
MvnI	CGCG	4 cut(s)	651, 750, 752, 1261
MwoI	GCNNNNNNNGC	4 cut(s)	912, 1169, 1457, 2102
NarI	GGCGCC	1 cut(s)	1510
NciI	CCSGG	1 cut(s)	168
NcoI	CCATGG	1 cut(s)	1854
NlaIV	GGNNCC	4 cut(s)	243, 816, 1511, 2376
NmuCI	GTSAC	4 cut(s)	777, 1541, 2083, 2710
NsiI	ATGCAT	2 cut(s)	1060, 1876
NspI	RCATGY	2 cut(s)	1969, 2069
PaeI	GCATGC	1 cut(s)	2069
PaqCI	CACCTGC	1 cut(s)	2276
PceI	AGGCCT	1 cut(s)	76
PciI	ACATGT	1 cut(s)	1965
PctI	GAATGC	1 cut(s)	1228
PdmI	GAANNNNTTC	3 cut(s)	1290, 1659, 1998
PfeI	GAWTC	7 cut(s)	206, 635, 686, 710, 1325, 1604, 2120
PflFI	GACNNNGTC	1 cut(s)	982
PfoI	TCCNGGA	1 cut(s)	1186
Ple19I	CGATCG	1 cut(s)	1015
PleI	GAGTC	7 cut(s)	379, 493, 943, 991, 991, 1229, 2537
PluTI	GGCGCC	1 cut(s)	1513
PpsI	GAGTC	7 cut(s)	379, 493, 943, 991, 991, 1229, 2537
PscI	ACATGT	1 cut(s)	1965
Psp6I	CCWGG	4 cut(s)	1037, 1186, 2027, 2620
PspEI	GGTNACC	2 cut(s)	777, 1541
PspGI	CCWGG	4 cut(s)	1037, 1186, 2027, 2620
PspN4I	GGNNCC	4 cut(s)	243, 816, 1511, 2376
PspPI	GGNCC	5 cut(s)	241, 538, 815, 1685, 2320
PstI	CTGCAG	1 cut(s)	1567
PstNI	CAGNNNCTG	2 cut(s)	1562, 2123
PsuI	RGATCY	3 cut(s)	1045, 1887, 2374
PsyI	GACNNNGTC	1 cut(s)	982
PvuI	CGATCG	1 cut(s)	1015
PvuII	CAGCTG	1 cut(s)	1568
RsaI	GTAC	4 cut(s)	165, 322, 447, 1134
RsaNI	GTAC	4 cut(s)	164, 321, 446, 1133
RseI	CAYNNNNRTG	1 cut(s)	591
SalI	GTCGAC	1 cut(s)	1754
Sau96I	GGNCC	5 cut(s)	241, 538, 815, 1685, 2320
ScaI	AGTACT	1 cut(s)	322
SchI	GAGTC	7 cut(s)	380, 494, 944, 991, 992, 1229, 2537
ScrFI	CCNGG	5 cut(s)	168, 1039, 1188, 2029, 2622
SduI	GDGCHC	4 cut(s)	8, 790, 1965, 2133
SfaNI	GCATC	7 cut(s)	1067, 1395, 1438, 1883, 2104, 2272, 2404
SfcI	CTRYAG	1 cut(s)	1563
SfoI	GGCGCC	1 cut(s)	1511
SinI	GGWCC	2 cut(s)	538, 1685
SmiMI	CAYNNNNRTG	1 cut(s)	591
SmlI	CTYRAG	2 cut(s)	907, 1443
SmoI	CTYRAG	2 cut(s)	907, 1443
SphI	GCATGC	1 cut(s)	2069
SseBI	AGGCCT	1 cut(s)	76
SspDI	GGCGCC	1 cut(s)	1509
SspI	AATATT	1 cut(s)	1291
SspMI	CTAG	7 cut(s)	15, 66, 420, 966, 1080, 1745, 2091
StuI	AGGCCT	1 cut(s)	76
StyD4I	CCNGG	5 cut(s)	166, 1037, 1186, 2027, 2620
StyI	CCWWGG	4 cut(s)	782, 965, 1854, 2347
TaaI	ACNGT	5 cut(s)	1115, 1825, 1977, 2458, 2716
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	4 cut(s)	183, 734, 1755, 2616
TaqII	GACCGA	1 cut(s)	765
TatI	WGTACW	3 cut(s)	320, 445, 1132
TauI	GCSGC	4 cut(s)	25, 65, 1264, 1909
TfiI	GAWTC	7 cut(s)	206, 635, 686, 710, 1325, 1604, 2120
TscAI	CASTG	4 cut(s)	1563, 1980, 2138, 2721
TseFI	GTSAC	4 cut(s)	777, 1541, 2083, 2710
TseI	GCWGC	9 cut(s)	620, 822, 912, 1457, 1562, 1565, 2162, 2572, 2669
Tsp45I	GTSAC	4 cut(s)	777, 1541, 2083, 2710
TspDTI	ATGAA	9 cut(s)	42, 102, 573, 1268, 1470, 1612, 1743, 2265, 2423
TspGWI	ACGGA	3 cut(s)	344, 1219, 1228
TspRI	CASTG	4 cut(s)	1563, 1980, 2138, 2721
Tth111I	GACNNNGTC	1 cut(s)	982
VpaK11BI	GGWCC	2 cut(s)	538, 1685
XapI	RAATTY	4 cut(s)	660, 1337, 2140, 2750
XbaI	TCTAGA	1 cut(s)	1744
XceI	RCATGY	2 cut(s)	1969, 2069
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2035
XmaJI	CCTAGG	1 cut(s)	965
XmiI	GTMKAC	2 cut(s)	896, 1755
XmnI	GAANNNNTTC	3 cut(s)	1290, 1659, 1998
XspI	CTAG	7 cut(s)	15, 66, 420, 966, 1080, 1745, 2091
ZrmI	AGTACT	1 cut(s)	322
Zsp2I	ATGCAT	2 cut(s)	1060, 1876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.