Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0006750

Physical Location & Seq

Genomic Coordinates Forward (+)

11285415 .. 11286953

Gene Structure 1539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG054000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTTGCATCAGTATGTCGACCAGTCAGTTACTCTCAAAGCTTGTGCGGGTCTGAATGGTATAAAATTGGGAGGGAGAGTGCTAACTGTGGTTCAGGCAATTCGTAGTGGATCATCCATGGTAAATAGTGGAAATGCATCACTCTATGAGATCCCAGAACATGCAAAGCCACTTCTCAAACAACCTTCACATATACTGAAGCTTCGAAATGTGTTCAATCTGGAGCACATGTCATCACTGTCTGAACAAGAGATTGAAGAAGTTCTGGAAGATGTGCGATTAGGATGTTCCAGGTTTGGCATGGTTAAATCTGTAAAGATTGTCAAGCATGCAAACAATCACATTGTCACCACTAGAGCGTGTGAAGCTGTCAATGATGCAGAATCTGGTGGGCACTGGCAAAATTTATGTTCTGAAGAAAAAGCAGCAAAAACAGAGACTTTGGACGAACATATTGATAATGGCAAGGAAACGAGTGGAGTGAAGCTTACAGGGGAACTTAAAGAAGATGAAGTCCCAGAAAGTAATTGCTTTGGTTATGATAAACCAGCAGGTGATTTTGTAGAGGACAAGTCATGTCAAATGGGCCAACCAGATAAAGATATTGAAATCCAAGGAAGCAATGACTCACCTAATAGGGATCCCGAAGAACTCAGCAACCTGCCAAACAGCATGGAAGATGAGTCAGAGTATTATAATGATAAAACTACCGAAGTTACAACAGTAGAGAGTTCTATTCTAGAGGAAGTTGATGGTAAGAAACAAGAGACTTTTGCTGGAACAGATGACAATGTGGGAACAGAAACAGCTCTATTCTGGCCAAATTTTTGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0006913 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032239 GO:0032241 GO:0032386 GO:0032388 GO:0032879 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046822 GO:0046824 GO:0046831 GO:0046833 GO:0046907 GO:0048518 GO:0050789 GO:0051049 GO:0051050 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0065007 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

278

Amino Acids

30.74

Weight (kDa)

4.64

Isoelectric Point (pI)

49.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33435
fragaria_vesca	FvH4_4g04160 FvH4_4g04160 FvH4_4g04160
malus_domestica	MD13G1218500.v1.1
prunus_persica	Prupe.1G045200_v2.0.a1 Prupe.1G045200_v2.0.a1
pyrus_communis	pycom13g19340
rosa_chinensis	RchiOBHm_Chr4g0394621 RchiOBHm_Chr4g0394661
rosa_laevigata	RLG00000009679 RLG00000009684
rosa_multiflora	Rmu_sc0005424.1_g000012 Rmu_sc0006945.1_g000040
rosa_roxburghii	Rroxscaffold_5G00339670
rosa_rugosa	Rorug03G0363100.1 Rorug03G0363500.1 Rorug03G0363600.1 Rorug03G0363700.1
rosa_samantha	Rh4AG053300 Rh4AG054000 Rh4BG051200 Rh4BG051700 Rh4CG058500 Rh4DG050200
rosa_wichuraiana	Rw4G004300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	696
AarI	CACCTGC	1 cut(s)	542
Acc36I	ACCTGC	2 cut(s)	542, 669
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	4 cut(s)	118, 145, 635, 648
AcoI	YGGCCR	1 cut(s)	818
AcsI	RAATTY	2 cut(s)	403, 823
AcuI	CTGAAG	2 cut(s)	218, 435
AflIII	ACRYGT	1 cut(s)	228
AgsI	TTSAA	3 cut(s)	217, 257, 608
AjnI	CCWGG	1 cut(s)	290
AluBI	AGCT	5 cut(s)	41, 202, 368, 487, 809
AluI	AGCT	5 cut(s)	41, 202, 368, 487, 809
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	2 cut(s)	431, 761
AlwI	GGATC	4 cut(s)	118, 145, 635, 648
AlwNI	CAGNNNCTG	1 cut(s)	386
AoxI	GGCC	2 cut(s)	586, 818
ApeKI	GCWGC	1 cut(s)	425
ApoI	RAATTY	2 cut(s)	403, 823
Asp700I	GAANNNNTTC	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	586
AsuHPI	GGTGA	3 cut(s)	340, 566, 621
AsuII	TTCGAA	1 cut(s)	205
BaeGI	GKGCMC	1 cut(s)	396
BalI	TGGCCA	1 cut(s)	820
BamHI	GGATCC	1 cut(s)	640
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	437
BccI	CCATC	1 cut(s)	746
BciT130I	CCWGG	1 cut(s)	292
BcoDI	GTCTC	2 cut(s)	431, 761
BfaI	CTAG	2 cut(s)	354, 740
BfuAI	ACCTGC	2 cut(s)	542, 669
BisI	GCNGC	1 cut(s)	426
BlsI	GCNGC	1 cut(s)	427
Bme1390I	CCNGG	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	586
BmiI	GGNNCC	1 cut(s)	642
BmrFI	CCNGG	1 cut(s)	292
BmsI	GCATC	3 cut(s)	16, 146, 367
BpmI	CTGGAG	1 cut(s)	242
Bpu14I	TTCGAA	1 cut(s)	205
BsaJI	CCNNGG	2 cut(s)	117, 613
BsaXI	ACNNNNNCTCC	4 cut(s)	63, 93, 215, 245
Bse1I	ACTGG	2 cut(s)	22, 401
Bse3DI	GCAATG	1 cut(s)	628
BseBI	CCWGG	1 cut(s)	292
BseDI	CCNNGG	2 cut(s)	117, 613
BseGI	GGATG	2 cut(s)	113, 290
BseMI	GCAATG	1 cut(s)	628
BseMII	CTCAG	1 cut(s)	667
BseNI	ACTGG	2 cut(s)	22, 401
BseSI	GKGCMC	1 cut(s)	396
BseXI	GCAGC	1 cut(s)	437
BshFI	GGCC	2 cut(s)	588, 820
BsiHKAI	GWGCWC	1 cut(s)	228
BslFI	GGGAC	1 cut(s)	500
BsmAI	GTCTC	2 cut(s)	431, 761
BsmFI	GGGAC	1 cut(s)	500
BsnI	GGCC	2 cut(s)	588, 820
Bsp119I	TTCGAA	1 cut(s)	205
Bsp1286I	GDGCHC	2 cut(s)	228, 396
Bsp143I	GATC	3 cut(s)	110, 150, 640
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	2 cut(s)	588, 820
BspCNI	CTCAG	1 cut(s)	666
BspLI	GGNNCC	1 cut(s)	642
BspMI	ACCTGC	2 cut(s)	542, 669
BspPI	GGATC	4 cut(s)	118, 145, 635, 648
BspT104I	TTCGAA	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	628
BsrI	ACTGG	2 cut(s)	22, 401
BssECI	CCNNGG	2 cut(s)	117, 613
BssMI	GATC	3 cut(s)	110, 150, 640
BssT1I	CCWWGG	2 cut(s)	117, 613
Bst2UI	CCWGG	1 cut(s)	292
Bst4CI	ACNGT	3 cut(s)	88, 240, 724
BstBI	TTCGAA	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	1 cut(s)	653
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	2 cut(s)	113, 290
BstKTI	GATC	3 cut(s)	113, 153, 643
BstMAI	GTCTC	2 cut(s)	431, 761
BstMBI	GATC	3 cut(s)	110, 150, 640
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	1 cut(s)	292
BstNSI	RCATGY	3 cut(s)	164, 232, 332
BstSCI	CCNGG	1 cut(s)	290
BstSLI	GKGCMC	1 cut(s)	396
BstV1I	GCAGC	1 cut(s)	437
BstX2I	RGATCY	2 cut(s)	150, 640
BstXI	CCANNNNNNTGG	1 cut(s)	828
BstYI	RGATCY	2 cut(s)	150, 640
BsuRI	GGCC	2 cut(s)	588, 820
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	2 cut(s)	113, 290
BtsIMutI	CAGTG	2 cut(s)	236, 394
BveI	ACCTGC	2 cut(s)	542, 669
Cac8I	GCNNGC	1 cut(s)	330
CaiI	CAGNNNCTG	1 cut(s)	386
Cfr13I	GGNCC	1 cut(s)	586
CviAII	CATG	7 cut(s)	118, 161, 229, 301, 329, 576, 673
CviJI	RGCY	8 cut(s)	41, 169, 202, 368, 487, 588, 809, 820
CviKI_1	RGCY	8 cut(s)	41, 169, 202, 368, 487, 588, 809, 820
DdeI	CTNAG	1 cut(s)	653
DpnI	GATC	3 cut(s)	112, 152, 642
DpnII	GATC	3 cut(s)	110, 150, 640
EaeI	YGGCCR	1 cut(s)	818
Eco130I	CCWWGG	2 cut(s)	117, 613
Eco57I	CTGAAG	2 cut(s)	218, 435
EcoRII	CCWGG	1 cut(s)	290
EcoT14I	CCWWGG	2 cut(s)	117, 613
EcoT22I	ATGCAT	1 cut(s)	139
ErhI	CCWWGG	2 cut(s)	117, 613
FaeI	CATG	7 cut(s)	121, 164, 232, 304, 332, 579, 676
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	7 cut(s)	117, 160, 228, 300, 328, 575, 672
FauI	CCCGC	1 cut(s)	40
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	426
FokI	GGATG	2 cut(s)	100, 297
Fsp4HI	GCNGC	1 cut(s)	426
FspBI	CTAG	2 cut(s)	354, 740
GluI	GCNGC	1 cut(s)	426
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	2 cut(s)	588, 820
Hin1II	CATG	7 cut(s)	121, 164, 232, 304, 332, 579, 676
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HindIII	AAGCTT	3 cut(s)	39, 200, 485
HinfI	GANTC	3 cut(s)	383, 626, 683
HphI	GGTGA	3 cut(s)	340, 566, 621
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	4 cut(s)	54, 244, 415, 688
Hpy188III	TCNNGA	4 cut(s)	221, 266, 644, 740
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	195
HpyCH4III	ACNGT	3 cut(s)	88, 240, 724
HpyCH4V	TGCA	5 cut(s)	7, 137, 164, 332, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	1 cut(s)	653
Hsp92II	CATG	7 cut(s)	121, 164, 232, 304, 332, 579, 676
Kzo9I	GATC	3 cut(s)	110, 150, 640
LmnI	GCTCC	1 cut(s)	223
Lsp1109I	GCAGC	1 cut(s)	437
LweI	GCATC	3 cut(s)	16, 146, 367
MaeI	CTAG	2 cut(s)	354, 740
MaeIII	GTNAC	3 cut(s)	28, 346, 715
MalI	GATC	3 cut(s)	112, 152, 642
MboI	GATC	3 cut(s)	110, 150, 640
MboII	GAAGA	6 cut(s)	269, 281, 428, 518, 659, 689
MflI	RGATCY	2 cut(s)	150, 640
MhlI	GDGCHC	2 cut(s)	228, 396
MlsI	TGGCCA	1 cut(s)	820
MluCI	AATT	5 cut(s)	65, 99, 403, 526, 823
MluNI	TGGCCA	1 cut(s)	820
MlyI	GAGTC	2 cut(s)	620, 692
MnlI	CCTC	3 cut(s)	65, 559, 736
Mox20I	TGGCCA	1 cut(s)	820
Mph1103I	ATGCAT	1 cut(s)	139
MroXI	GAANNNNTTC	1 cut(s)	261
MscI	TGGCCA	1 cut(s)	820
MseI	TTAA	2 cut(s)	306, 501
MslI	CAYNNNNRTG	1 cut(s)	12
Msp20I	TGGCCA	1 cut(s)	820
MspR9I	CCNGG	1 cut(s)	292
MvaI	CCWGG	1 cut(s)	292
MwoI	GCNNNNNNNGC	1 cut(s)	365
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	3 cut(s)	110, 150, 640
NlaIII	CATG	7 cut(s)	121, 164, 232, 304, 332, 579, 676
NlaIV	GGNNCC	1 cut(s)	642
NmuCI	GTSAC	1 cut(s)	346
NsiI	ATGCAT	1 cut(s)	139
NspI	RCATGY	3 cut(s)	164, 232, 332
NspV	TTCGAA	1 cut(s)	205
PaeI	GCATGC	1 cut(s)	332
PaqCI	CACCTGC	1 cut(s)	542
PciI	ACATGT	1 cut(s)	228
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	1 cut(s)	427
PleI	GAGTC	2 cut(s)	620, 691
PpsI	GAGTC	2 cut(s)	620, 691
PscI	ACATGT	1 cut(s)	228
PsiI	TTATAA	1 cut(s)	696
Psp6I	CCWGG	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	290
PspN4I	GGNNCC	1 cut(s)	642
PspPI	GGNCC	1 cut(s)	586
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	2 cut(s)	150, 640
RseI	CAYNNNNRTG	1 cut(s)	12
SalI	GTCGAC	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	306, 501
SatI	GCNGC	1 cut(s)	426
Sau3AI	GATC	3 cut(s)	110, 150, 640
Sau96I	GGNCC	1 cut(s)	586
SchI	GAGTC	2 cut(s)	620, 692
ScrFI	CCNGG	1 cut(s)	292
SduI	GDGCHC	2 cut(s)	228, 396
SfaNI	GCATC	3 cut(s)	16, 146, 367
SfuI	TTCGAA	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	12
SphI	GCATGC	1 cut(s)	332
Sse9I	AATT	5 cut(s)	65, 99, 403, 526, 823
SsiI	CCGC	1 cut(s)	47
SspMI	CTAG	2 cut(s)	354, 740
StyD4I	CCNGG	1 cut(s)	290
StyI	CCWWGG	2 cut(s)	117, 613
TaaI	ACNGT	3 cut(s)	88, 240, 724
TaqI	TCGA	2 cut(s)	18, 205
TasI	AATT	5 cut(s)	65, 99, 403, 526, 823
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	2 cut(s)	306, 501
Tru9I	TTAA	2 cut(s)	306, 501
TscAI	CASTG	2 cut(s)	243, 401
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	1 cut(s)	425
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	1 cut(s)	525
TspRI	CASTG	2 cut(s)	243, 401
XapI	RAATTY	2 cut(s)	403, 823
XbaI	TCTAGA	1 cut(s)	739
XceI	RCATGY	3 cut(s)	164, 232, 332
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XmiI	GTMKAC	1 cut(s)	18
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	2 cut(s)	354, 740
Zsp2I	ATGCAT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.