Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006750

Physical Location & Seq

Genomic Coordinates Forward (+)

9260666 .. 9263685

Gene Structure 3020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG051700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGCAGCTTCCGCAACCGCGGCTATCTTCTTTGGCAGCTGTTCCGGTCTATGCCTCCGCAGCGGAGCAGAGTCCTCCAAGAGAATATTGTCTTCCAAGACCCAAGCAGTTTCCGATATTGGGTTCCTCACCAGTCAGCTCAGCGGCCTCAAAATCTCCTACGACGTGTCGTCTCAGCTCCCCAGTCCCATCTTCACTCCTTCCCTCCCTGGCCTTCAGCCCATTGTTGCTCGTAGAATTTGTCCTTTTACTGGGAAGAAAGCAAACAAGGCAAACAAGATTTCCTTCTCTGCCCACAAGACCAAGAAGTTGCAGTTTGTGAACCTGCAGTATAAGAGGATCTGGTATGTCGACCAGTCAGTTACTCTCAAAGCTTGTGCGGGTCTGAATGGTATAAAATTGGGAGGGAGAGTGCTAACTGTGGTTCAGGCAATTCGTAGTGGATCATCCATGGTAAATAGTGGAAATGCATCACTCTATGAGATCCCAGAACATGCAAAGCCACTTCTCAAACAACCTTCACATATACTGAAGCTTCGAAATGTGTTCAATCTGGAGCACATGTCATCACTGTCTGAACAAGAGATTGAAGAAGTTCTGGAAGATGTGCGATTAGGATGTTCCAGGTTTGGCATGGTTAAATCTGTAAAGATTGTCAAGCATGCAAACAATCACATTGTCACCACTAGAGCGTGTGAAGCTGTCAATGATGCAGAATCTGGTGGGCACTGGCAAAATTTATGTTCTGAAGAAAAAGCAGCAAAAACAGAGACTTTGGACGAACATATTGATAATGGCAAGGAAACGAGTGGAGTGAAGCTTACAGGGGAACTTAAAGAAGATGAAGTCCCAGAAAGTAATTGCTTTGGTTATGATAAACCAGCAGGTGATTTTGTAGAGGACAAGTCATGTCAAATGGGCCAACCAGATAAAGATATTGAAATCCAAGGAAGCAATGACTCACCTAATAGGGATCCCGAAGAACTCAGCAACCTGCCAAACAGCATGGAAGATGAGTCAGAGTATTATAATGATAAAACTACCGAAGTTACAACAGTAGAGAGTTCTATTCTAGAGGAAGTTGATGGTAAGAAACAAGAGACTTTTGCTGGAACAGATGACAATGTGGGAACAGAAACAGCTCTATTCTGGCCAAATTTTTGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0006913 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032239 GO:0032241 GO:0032386 GO:0032388 GO:0032879 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046822 GO:0046824 GO:0046831 GO:0046833 GO:0046907 GO:0048518 GO:0050789 GO:0051049 GO:0051050 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0065007 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

389

Amino Acids

42.61

Weight (kDa)

5.36

Isoelectric Point (pI)

55.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28	PF00830	79 - 127	7.9e-11	Ribosomal L28 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33435
fragaria_vesca	FvH4_4g04160 FvH4_4g04160 FvH4_4g04160
malus_domestica	MD13G1218500.v1.1
prunus_persica	Prupe.1G045200_v2.0.a1 Prupe.1G045200_v2.0.a1
pyrus_communis	pycom13g19340
rosa_chinensis	RchiOBHm_Chr4g0394621 RchiOBHm_Chr4g0394661
rosa_laevigata	RLG00000009679 RLG00000009684
rosa_multiflora	Rmu_sc0005424.1_g000012 Rmu_sc0006945.1_g000040
rosa_roxburghii	Rroxscaffold_5G00339670
rosa_rugosa	Rorug03G0363100.1 Rorug03G0363500.1 Rorug03G0363600.1 Rorug03G0363700.1
rosa_samantha	Rh4AG053300 Rh4AG054000 Rh4BG051200 Rh4BG051700 Rh4CG058500 Rh4DG050200
rosa_wichuraiana	Rw4G004300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1029
AarI	CACCTGC	1 cut(s)	875
Acc36I	ACCTGC	3 cut(s)	333, 875, 1002
AccI	GTMKAC	1 cut(s)	351
AccII	CGCG	1 cut(s)	20
AciI	CCGC	7 cut(s)	12, 18, 20, 58, 63, 144, 380
AclWI	GGATC	5 cut(s)	347, 451, 478, 968, 981
AcoI	YGGCCR	1 cut(s)	1151
AcsI	RAATTY	3 cut(s)	237, 736, 1156
AcuI	CTGAAG	3 cut(s)	200, 551, 768
AfiI	CCNNNNNNNGG	2 cut(s)	120, 251
AflIII	ACRYGT	2 cut(s)	165, 561
AgsI	TTSAA	3 cut(s)	550, 590, 941
AhdI	GACNNNNNGTC	1 cut(s)	169
AjiI	CACGTC	1 cut(s)	166
AjnI	CCWGG	2 cut(s)	208, 623
AluBI	AGCT	9 cut(s)	8, 39, 139, 178, 374, 535, 701, 820, 1142
AluI	AGCT	9 cut(s)	8, 39, 139, 178, 374, 535, 701, 820, 1142
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	3 cut(s)	177, 764, 1094
AlwI	GGATC	5 cut(s)	347, 451, 478, 968, 981
AlwNI	CAGNNNCTG	1 cut(s)	719
AoxI	GGCC	4 cut(s)	145, 211, 919, 1151
ApeKI	GCWGC	4 cut(s)	5, 36, 60, 758
ApoI	RAATTY	3 cut(s)	237, 736, 1156
Asp700I	GAANNNNTTC	1 cut(s)	594
AspS9I	GGNCC	1 cut(s)	919
AsuHPI	GGTGA	4 cut(s)	121, 673, 899, 954
AsuII	TTCGAA	1 cut(s)	538
BaeGI	GKGCMC	1 cut(s)	729
BalI	TGGCCA	1 cut(s)	1153
BamHI	GGATCC	1 cut(s)	973
BbsI	GAAGAC	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	4 cut(s)	17, 48, 72, 770
BccI	CCATC	2 cut(s)	197, 1079
BciT130I	CCWGG	2 cut(s)	210, 625
BcoDI	GTCTC	3 cut(s)	177, 764, 1094
BfaI	CTAG	2 cut(s)	687, 1073
BfmI	CTRYAG	1 cut(s)	326
BfuAI	ACCTGC	3 cut(s)	333, 875, 1002
BisI	GCNGC	6 cut(s)	6, 21, 37, 61, 145, 759
BlpI	GCTNAGC	1 cut(s)	140
BlsI	GCNGC	6 cut(s)	7, 22, 38, 62, 146, 760
Bme1390I	CCNGG	2 cut(s)	210, 625
BmeRI	GACNNNNNGTC	1 cut(s)	169
BmgBI	CACGTC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	919
BmiI	GGNNCC	2 cut(s)	125, 975
BmrFI	CCNGG	2 cut(s)	210, 625
BmrI	ACTGGG	2 cut(s)	177, 261
BmsI	GCATC	2 cut(s)	479, 700
BmuI	ACTGGG	2 cut(s)	177, 261
BpiI	GAAGAC	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	575
Bpu1102I	GCTNAGC	1 cut(s)	140
Bpu14I	TTCGAA	1 cut(s)	538
BsaJI	CCNNGG	4 cut(s)	18, 208, 450, 946
BsaWI	WCCGGW	1 cut(s)	44
BsaXI	ACNNNNNCTCC	4 cut(s)	396, 426, 548, 578
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 251
Bse1I	ACTGG	5 cut(s)	132, 183, 256, 355, 734
Bse3DI	GCAATG	1 cut(s)	961
BseBI	CCWGG	2 cut(s)	210, 625
BseDI	CCNNGG	4 cut(s)	18, 208, 450, 946
BseGI	GGATG	2 cut(s)	446, 623
BseLI	CCNNNNNNNGG	2 cut(s)	120, 251
BseMI	GCAATG	1 cut(s)	961
BseMII	CTCAG	3 cut(s)	154, 188, 1000
BseNI	ACTGG	5 cut(s)	132, 183, 256, 355, 734
BseSI	GKGCMC	1 cut(s)	729
BseXI	GCAGC	4 cut(s)	17, 48, 72, 770
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	4 cut(s)	147, 213, 921, 1153
BsiHKAI	GWGCWC	1 cut(s)	561
BsiSI	CCGG	1 cut(s)	45
BslFI	GGGAC	2 cut(s)	171, 833
BslI	CCNNNNNNNGG	2 cut(s)	120, 251
BsmAI	GTCTC	3 cut(s)	177, 764, 1094
BsmBI	CGTCTC	1 cut(s)	177
BsmFI	GGGAC	2 cut(s)	171, 833
BsnI	GGCC	4 cut(s)	147, 213, 921, 1153
Bsp119I	TTCGAA	1 cut(s)	538
Bsp1286I	GDGCHC	2 cut(s)	561, 729
Bsp143I	GATC	4 cut(s)	339, 443, 483, 973
Bsp1720I	GCTNAGC	1 cut(s)	140
Bsp19I	CCATGG	1 cut(s)	450
BspACI	CCGC	7 cut(s)	12, 18, 20, 58, 63, 144, 380
BspANI	GGCC	4 cut(s)	147, 213, 921, 1153
BspCNI	CTCAG	3 cut(s)	153, 187, 999
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	2 cut(s)	125, 975
BspMAI	CTGCAG	1 cut(s)	330
BspMI	ACCTGC	3 cut(s)	333, 875, 1002
BspPI	GGATC	5 cut(s)	347, 451, 478, 968, 981
BspT104I	TTCGAA	1 cut(s)	538
BsrDI	GCAATG	1 cut(s)	961
BsrI	ACTGG	5 cut(s)	132, 183, 256, 355, 734
BssECI	CCNNGG	4 cut(s)	18, 208, 450, 946
BssMI	GATC	4 cut(s)	339, 443, 483, 973
BssT1I	CCWWGG	2 cut(s)	450, 946
Bst2UI	CCWGG	2 cut(s)	210, 625
Bst4CI	ACNGT	3 cut(s)	421, 573, 1057
BstBI	TTCGAA	1 cut(s)	538
BstC8I	GCNNGC	1 cut(s)	663
BstDEI	CTNAG	3 cut(s)	140, 174, 986
BstDSI	CCRYGG	2 cut(s)	18, 450
BstF5I	GGATG	2 cut(s)	446, 623
BstFNI	CGCG	1 cut(s)	20
BstKTI	GATC	4 cut(s)	342, 446, 486, 976
BstMAI	GTCTC	3 cut(s)	177, 764, 1094
BstMBI	GATC	4 cut(s)	339, 443, 483, 973
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 20, 60, 269, 698
BstNI	CCWGG	2 cut(s)	210, 625
BstNSI	RCATGY	3 cut(s)	497, 565, 665
BstSCI	CCNGG	2 cut(s)	208, 623
BstSFI	CTRYAG	1 cut(s)	326
BstSLI	GKGCMC	1 cut(s)	729
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	4 cut(s)	17, 48, 72, 770
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	3 cut(s)	339, 483, 973
BstXI	CCANNNNNNTGG	1 cut(s)	1161
BstYI	RGATCY	3 cut(s)	339, 483, 973
BsuRI	GGCC	4 cut(s)	147, 213, 921, 1153
BtgI	CCRYGG	2 cut(s)	18, 450
BtrI	CACGTC	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	446, 623
BtsIMutI	CAGTG	2 cut(s)	569, 727
BveI	ACCTGC	3 cut(s)	333, 875, 1002
Cac8I	GCNNGC	1 cut(s)	663
CaiI	CAGNNNCTG	1 cut(s)	719
Cfr13I	GGNCC	1 cut(s)	919
Cfr42I	CCGCGG	1 cut(s)	21
CviAII	CATG	7 cut(s)	451, 494, 562, 634, 662, 909, 1006
DdeI	CTNAG	3 cut(s)	140, 174, 986
DpnI	GATC	4 cut(s)	341, 445, 485, 975
DpnII	GATC	4 cut(s)	339, 443, 483, 973
DriI	GACNNNNNGTC	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	1151
Eam1105I	GACNNNNNGTC	1 cut(s)	169
Eco130I	CCWWGG	2 cut(s)	450, 946
Eco57I	CTGAAG	3 cut(s)	200, 551, 768
EcoRII	CCWGG	2 cut(s)	208, 623
EcoT14I	CCWWGG	2 cut(s)	450, 946
EcoT22I	ATGCAT	1 cut(s)	472
ErhI	CCWWGG	2 cut(s)	450, 946
Esp3I	CGTCTC	1 cut(s)	177
FaeI	CATG	7 cut(s)	454, 497, 565, 637, 665, 912, 1009
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FaqI	GGGAC	2 cut(s)	171, 833
FatI	CATG	7 cut(s)	450, 493, 561, 633, 661, 908, 1005
FauI	CCCGC	1 cut(s)	373
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	6 cut(s)	6, 21, 37, 61, 145, 759
FokI	GGATG	2 cut(s)	433, 630
Fsp4HI	GCNGC	6 cut(s)	6, 21, 37, 61, 145, 759
FspBI	CTAG	2 cut(s)	687, 1073
GluI	GCNGC	6 cut(s)	6, 21, 37, 61, 145, 759
GsuI	CTGGAG	1 cut(s)	575
HaeIII	GGCC	4 cut(s)	147, 213, 921, 1153
HapII	CCGG	1 cut(s)	45
Hin1II	CATG	7 cut(s)	454, 497, 565, 637, 665, 912, 1009
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HindIII	AAGCTT	3 cut(s)	372, 533, 818
HinfI	GANTC	4 cut(s)	71, 716, 959, 1016
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	4 cut(s)	121, 673, 899, 954
Hpy166II	GTNNAC	2 cut(s)	322, 352
Hpy188I	TCNGA	5 cut(s)	115, 387, 577, 748, 1021
Hpy188III	TCNNGA	4 cut(s)	554, 599, 977, 1073
Hpy8I	GTNNAC	2 cut(s)	322, 352
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	4 cut(s)	210, 224, 295, 528
HpyCH4III	ACNGT	3 cut(s)	421, 573, 1057
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	6 cut(s)	313, 328, 470, 497, 665, 713
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 20, 60, 269, 698
HpyF3I	CTNAG	3 cut(s)	140, 174, 986
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	7 cut(s)	454, 497, 565, 637, 665, 912, 1009
KspI	CCGCGG	1 cut(s)	21
Kzo9I	GATC	4 cut(s)	339, 443, 483, 973
LmnI	GCTCC	3 cut(s)	65, 183, 556
Lsp1109I	GCAGC	4 cut(s)	17, 48, 72, 770
LweI	GCATC	2 cut(s)	479, 700
MaeI	CTAG	2 cut(s)	687, 1073
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	3 cut(s)	361, 679, 1048
MalI	GATC	4 cut(s)	341, 445, 485, 975
MboI	GATC	4 cut(s)	339, 443, 483, 973
MflI	RGATCY	3 cut(s)	339, 483, 973
MhlI	GDGCHC	2 cut(s)	561, 729
MlsI	TGGCCA	1 cut(s)	1153
MluCI	AATT	6 cut(s)	237, 398, 432, 736, 859, 1156
MluNI	TGGCCA	1 cut(s)	1153
MlyI	GAGTC	3 cut(s)	80, 953, 1025
MnlI	CCTC	9 cut(s)	65, 85, 137, 158, 215, 330, 398, 892, 1069
Mox20I	TGGCCA	1 cut(s)	1153
Mph1103I	ATGCAT	1 cut(s)	472
MroXI	GAANNNNTTC	1 cut(s)	594
MscI	TGGCCA	1 cut(s)	1153
MseI	TTAA	2 cut(s)	639, 834
Msp20I	TGGCCA	1 cut(s)	1153
MspA1I	CMGCKG	4 cut(s)	20, 39, 63, 144
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	2 cut(s)	210, 625
MvaI	CCWGG	2 cut(s)	210, 625
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	5 cut(s)	11, 20, 60, 269, 698
NcoI	CCATGG	1 cut(s)	450
NdeII	GATC	4 cut(s)	339, 443, 483, 973
NlaIII	CATG	7 cut(s)	454, 497, 565, 637, 665, 912, 1009
NlaIV	GGNNCC	2 cut(s)	125, 975
NmuCI	GTSAC	1 cut(s)	679
NsiI	ATGCAT	1 cut(s)	472
NspI	RCATGY	3 cut(s)	497, 565, 665
NspV	TTCGAA	1 cut(s)	538
PaeI	GCATGC	1 cut(s)	665
PaqCI	CACCTGC	1 cut(s)	875
PciI	ACATGT	1 cut(s)	561
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	1 cut(s)	716
PkrI	GCNGC	6 cut(s)	7, 22, 38, 62, 146, 760
PleI	GAGTC	3 cut(s)	79, 953, 1024
PpsI	GAGTC	3 cut(s)	79, 953, 1024
PscI	ACATGT	1 cut(s)	561
PsiI	TTATAA	1 cut(s)	1029
Psp6I	CCWGG	2 cut(s)	208, 623
PspGI	CCWGG	2 cut(s)	208, 623
PspN4I	GGNNCC	2 cut(s)	125, 975
PspPI	GGNCC	1 cut(s)	919
PstI	CTGCAG	1 cut(s)	330
PstNI	CAGNNNCTG	1 cut(s)	719
PsuI	RGATCY	3 cut(s)	339, 483, 973
PvuII	CAGCTG	1 cut(s)	39
SacII	CCGCGG	1 cut(s)	21
SalI	GTCGAC	1 cut(s)	350
SaqAI	TTAA	2 cut(s)	639, 834
SatI	GCNGC	6 cut(s)	6, 21, 37, 61, 145, 759
Sau3AI	GATC	4 cut(s)	339, 443, 483, 973
Sau96I	GGNCC	1 cut(s)	919
SchI	GAGTC	3 cut(s)	80, 953, 1025
ScrFI	CCNGG	2 cut(s)	210, 625
SduI	GDGCHC	2 cut(s)	561, 729
SfaNI	GCATC	2 cut(s)	479, 700
SfcI	CTRYAG	1 cut(s)	326
Sfr303I	CCGCGG	1 cut(s)	21
SfuI	TTCGAA	1 cut(s)	538
SgrBI	CCGCGG	1 cut(s)	21
SphI	GCATGC	1 cut(s)	665
Sse9I	AATT	6 cut(s)	237, 398, 432, 736, 859, 1156
SsiI	CCGC	7 cut(s)	12, 18, 20, 58, 63, 144, 380
SspI	AATATT	1 cut(s)	87
SspMI	CTAG	2 cut(s)	687, 1073
StyD4I	CCNGG	2 cut(s)	208, 623
StyI	CCWWGG	2 cut(s)	450, 946
TaaI	ACNGT	3 cut(s)	421, 573, 1057
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	2 cut(s)	351, 538
TasI	AATT	6 cut(s)	237, 398, 432, 736, 859, 1156
TauI	GCSGC	2 cut(s)	23, 147
TfiI	GAWTC	1 cut(s)	716
Tru1I	TTAA	2 cut(s)	639, 834
Tru9I	TTAA	2 cut(s)	639, 834
TscAI	CASTG	2 cut(s)	576, 734
TseFI	GTSAC	1 cut(s)	679
TseI	GCWGC	4 cut(s)	5, 36, 60, 758
Tsp45I	GTSAC	1 cut(s)	679
TspDTI	ATGAA	1 cut(s)	858
TspRI	CASTG	2 cut(s)	576, 734
XapI	RAATTY	3 cut(s)	237, 736, 1156
XbaI	TCTAGA	1 cut(s)	1072
XceI	RCATGY	3 cut(s)	497, 565, 665
XcmI	CCANNNNNNNNNTGG	1 cut(s)	631
XmiI	GTMKAC	1 cut(s)	351
XmnI	GAANNNNTTC	1 cut(s)	594
XspI	CTAG	2 cut(s)	687, 1073
Zsp2I	ATGCAT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.