Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006750

Physical Location & Seq

Genomic Coordinates Forward (+)

8042475 .. 8050352

Gene Structure 7878 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG050200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2778 bp

ATGGGGAAGATGAGCACATCATCTAGTCGGCGGCATGAAAAGAAAGTGCATGACCACGACGAAGAAAGTGCTGCTAGGACAAGGCCTTTCGGCTATGAAGAGATTATGCTTAGGAGGAAGGATAAGAAGTTGTGTGATAATGTTGTGGCGGAAGCGGTTGATTTAGGGGATGTACCGGGGGAAGGTAGTGTCGAAAATGTTTCAGAGCCTTTTGAATCCAAAAGGGGTGAGAGACGGCATAAAGATTTGGCCCCTGTTGTTGAAAAGCCTTTGTCGGAGGAGAGAGTGAAGGAAAGCTCCAGAAAGAAAGAAACGTATAGTTCTAAGAGTACTAAAACGGAAGACGATGTGGTTAAAGGGAAAGTTAGACGAAGCAATGAGTCGGAGAGCTTGAAGGATAAGCCAAAAAAAGATACAAGAAGTGAAGCTAGAGGAGACAAAACTGACAAACAAGTACATGGTAGGAGGAAAATTGACAAGGACTCAATTGATGAGTCTGTAAAGAAGCAGTCAAGAGATTATTCAACAAGAAAAGAAAGACATTTGGACCAAAATAGAGGGGAACATGAAAGAGAAACCAAGAGAAAATACCAACACGAAAATGATGACAAAATCAGAGACAGAAATGCTGCAAAGAAACATGATTCAGGAAAGCTTCGTGCTTTAGAAATTTCAGAGAGAAAGGAAAGGACAGAATCATCAAAATCACGCTTTGAAGAATCAAGACGCAAAAGGGGAAGATCGAGGAGTAGAGACCGCGTGGATAGACATAGGTTAAGTTCTCGGTCACCAAGGGCACACAAACATACATTAAATAATTTGGGGCCTCGCAGCGATATATCATCATATTCTCCCAAAGATAGGTCTGGAAGACAGCATTTGGATATTGATAGTAGCAGAGTGTCTACTAATGGCTCAAGCAGCCACTATCAGCGACATGGTGAGTCTGCGAATAGACTTGGTGGCTATTCCCCTAGGAAGAGAAGGACTGAGTCTGCTATTAAGACTCCATCCCCACCCGATCGTTCACCTGAAAAGAAAAATGCCAGGTGGGATCTCCCCCATGCATCAACTGACAAGGCATTATCTAGTTTGGTTGCTTCTCGTTTTCAGTCATCAAACAGTAATGTATCCTCAAATGTACATGGGATGACCATTGCTGTTGCTGTTGCCTCAACCGCCACAACATCTAATCCTGGAGTTTCTCCCAATTCTATATTGACTACGAAGAATGCTTCCGTTGACTCCGTGCAATTAACACAAGCTACCCGCCGTATGAGGAGGCTTCATGTAGAAAATATTCCATCTACAACCTCTGAAAACACTTTGGTAGAATCTCTTAATAAATTTTTGTTGTCTTTGGGCGTAAATCATATTCAAGGAACACAACCCTGCATCAGTTGTGTGATTAACAAAGAGAAGGGGCAAGCTCTTGTGGAGTTTCTTACACCTCAAGATGCTTTGGCTGCTTTGTCATTTGATGGCAGTTCATTCTTTGGTTCTATTCTCAAAATCAGGCGCCCTAAGGACTTTGTTGACGTTGCTACTGGTGACCCTGAGAAATCAGTGGCTGCAGCTGAGAGTATTGAGACAATAAGTGATGTTGTGAACGATTCTCCTAACAAGATTTTCATTGGTGGGATATCAAAGGCTCTTTCCTCAGAAATGATTCTGGAAATCGTTAGTGTCTTTGGACCTTTGAAGGCATACCATTTTGAGGCCAATGAGGAACTTAATGAACCATGTGCTTTTCTAGAGTATGTCGACCAGTCAGTTACTCTCAAAGCTTGTGCGGGTCTGAATGGTATAAAATTAGGAGGGAGAGTGCTAACTGTGGTTCAGGCAATTCGTAGTGGATCATCCATGGTAAATAGTGGAAATGCATCACTCTATGAGATCCCAGAACATGCAAAGCTGCTTCTCAAACAACCTTCACATATCCTGAAGCTTAGAAATGTGTTCAATCTGGAGCACATGTCATCACTGTCTGAACAAGAGATTGAAGAAGTTCTGGAAGATGTGCGATTAGAATGTGCCAGGTTTGGCATGGTTAAATCTGTAAAGATTGTCAAGCATGCAAACAATCACATTGTCACCACTAGAGCGTGTGAAGCTGTCAATGATGCAGAATCTGGTGGGCACTGGCAAAATTTATGTTCTGAAGAAAAAGCAGCAAAAACAGAGACTTTGGACGAACATATTGATGATGACGGCAAGGAAACGAGTGGAGTGAAGCTTACAGGGGAGCTTAAAGAAGCTGAAGTCCCAGAAAGTAATTGCTTTGGTTATGATAAACCAGCAGGTGATTTTGTAGAGGACAAGTCATGTCAAATGGGCCAACCAGATAAAGATATTGAAGTCCAAGGAAGCAATGACTTACCTAATAGGGATCCCGAAGAACTCACCAACCTGCCAAACAGCATGAAAGATGCGTCAGAGTGTTATGATGATAAAACTCCTGAAGTTACAACAGTAGAGAGTTCTATTATACAGGAAGTTGATGGTAAGAAGCAACAGACTTTTGCTGGAACAGATGACAATGTGGGAACAGAAACAGACTCTATTCTGGAGAGTGGAACTAAGGAGCAGCATAATGGGAAGGAGAATGATTTTGATCTTGGAAGCATATTCGAGCCTGGGTGTGTCTTTGTGGAGTTTGGGAGATCAGAAGCCTCTTGGATGGCAGCACATTGTTTACATGGACGAGTTTTTGATGATCGGATTGTGACAGTGGAGTATATCGCACCTGATCATTACAGGGCTAAATTTTTAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0006913 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032239 GO:0032241 GO:0032386 GO:0032388 GO:0032879 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046822 GO:0046824 GO:0046831 GO:0046833 GO:0046907 GO:0048518 GO:0050789 GO:0051049 GO:0051050 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0065007 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

925

Amino Acids

103.12

Weight (kDa)

6.63

Isoelectric Point (pI)

57.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	543 - 610	2.4e-06	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33435
fragaria_vesca	FvH4_4g04160 FvH4_4g04160 FvH4_4g04160
malus_domestica	MD13G1218500.v1.1
prunus_persica	Prupe.1G045200_v2.0.a1 Prupe.1G045200_v2.0.a1
pyrus_communis	pycom13g19340
rosa_chinensis	RchiOBHm_Chr4g0394621 RchiOBHm_Chr4g0394661
rosa_laevigata	RLG00000009679 RLG00000009684
rosa_multiflora	Rmu_sc0005424.1_g000012 Rmu_sc0006945.1_g000040
rosa_roxburghii	Rroxscaffold_5G00339670
rosa_rugosa	Rorug03G0363100.1 Rorug03G0363500.1 Rorug03G0363600.1 Rorug03G0363700.1
rosa_samantha	Rh4AG053300 Rh4AG054000 Rh4BG051200 Rh4BG051700 Rh4CG058500 Rh4DG050200
rosa_wichuraiana	Rw4G004300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2291
Acc36I	ACCTGC	2 cut(s)	2291, 2418
AccB1I	GGYRCC	1 cut(s)	1518
AccI	GTMKAC	2 cut(s)	905, 1764
AccII	CGCG	1 cut(s)	759
AciI	CCGC	7 cut(s)	31, 149, 155, 757, 1179, 1270, 1793
AclWI	GGATC	5 cut(s)	1062, 1864, 1891, 2384, 2397
AcsI	RAATTY	4 cut(s)	669, 1346, 2149, 2765
AcuI	CTGAAG	4 cut(s)	1964, 2181, 2280, 2481
AcyI	GRCGYC	1 cut(s)	1519
AfaI	GTAC	4 cut(s)	174, 331, 456, 1143
AfiI	CCNNNNNNNGG	3 cut(s)	182, 861, 1717
AflIII	ACRYGT	1 cut(s)	1974
AjnI	CCWGG	4 cut(s)	1046, 1195, 2036, 2635
Alw21I	GWGCWC	2 cut(s)	17, 1974
Alw26I	GTCTC	6 cut(s)	226, 429, 612, 747, 1583, 2177
AlwI	GGATC	5 cut(s)	1062, 1864, 1891, 2384, 2397
AlwNI	CAGNNNCTG	2 cut(s)	1571, 2132
AoxI	GGCC	5 cut(s)	83, 249, 824, 1719, 2335
ApoI	RAATTY	4 cut(s)	669, 1346, 2149, 2765
Asp700I	GAANNNNTTC	3 cut(s)	1299, 1668, 2007
AspA2I	CCTAGG	1 cut(s)	974
AspLEI	GCGC	1 cut(s)	1521
AspS9I	GGNCC	5 cut(s)	250, 547, 824, 1694, 2335
AsuC2I	CCSGG	1 cut(s)	177
AsuHPI	GGTGA	8 cut(s)	239, 780, 953, 1020, 1562, 2086, 2315, 2395
AvaII	GGWCC	2 cut(s)	547, 1694
AvrII	CCTAGG	1 cut(s)	974
AxyI	CCTNAGG	1 cut(s)	1524
BaeGI	GKGCMC	2 cut(s)	799, 2142
BamHI	GGATCC	1 cut(s)	2389
BanI	GGYRCC	1 cut(s)	1518
BbsI	GAAGAC	2 cut(s)	348, 877
Bbv12I	GWGCWC	2 cut(s)	17, 1974
BccI	CCATC	5 cut(s)	1018, 1312, 1475, 2495, 2674
BceAI	ACGGC	3 cut(s)	251, 1257, 2227
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BciT130I	CCWGG	4 cut(s)	1048, 1197, 2038, 2637
BciVI	GTATCC	1 cut(s)	1141
BclI	TGATCA	1 cut(s)	2749
BcnI	CCSGG	1 cut(s)	177
BcoDI	GTCTC	6 cut(s)	226, 429, 612, 747, 1583, 2177
BfaI	CTAG	7 cut(s)	24, 75, 429, 975, 1089, 1754, 2100
BfmI	CTRYAG	1 cut(s)	1572
BfoI	RGCGCY	1 cut(s)	1522
BfuAI	ACCTGC	2 cut(s)	2291, 2418
BfuI	GTATCC	1 cut(s)	1141
BlnI	CCTAGG	1 cut(s)	974
BmcAI	AGTACT	1 cut(s)	331
Bme1390I	CCNGG	5 cut(s)	177, 1048, 1197, 2038, 2637
Bme18I	GGWCC	2 cut(s)	547, 1694
BmgT120I	GGNCC	5 cut(s)	250, 547, 824, 1694, 2335
BmiI	GGNNCC	4 cut(s)	252, 825, 1520, 2391
BmrFI	CCNGG	5 cut(s)	177, 1048, 1197, 2038, 2637
BmsI	GCATC	6 cut(s)	1076, 1404, 1447, 1892, 2113, 2419
BpiI	GAAGAC	2 cut(s)	348, 877
BpmI	CTGGAG	4 cut(s)	283, 1218, 1988, 2588
Bpu10I	CCTNAGC	1 cut(s)	110
BpuEI	CTTGAG	2 cut(s)	901, 1437
BpuMI	CCSGG	1 cut(s)	177
BsaBI	GATNNNNATC	1 cut(s)	2613
BsaHI	GRCGYC	1 cut(s)	1519
BsaI	GGTCTC	1 cut(s)	747
BsaJI	CCNNGG	6 cut(s)	176, 791, 974, 1863, 2362, 2636
BsaXI	ACNNNNNCTCC	4 cut(s)	1809, 1839, 1961, 1991
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 861, 1717
Bse1I	ACTGG	3 cut(s)	1552, 1768, 2147
Bse21I	CCTNAGG	1 cut(s)	1524
Bse3DI	GCAATG	3 cut(s)	382, 1155, 2377
Bse8I	GATNNNNATC	1 cut(s)	2613
BseBI	CCWGG	4 cut(s)	1048, 1197, 2038, 2637
BseDI	CCNNGG	6 cut(s)	176, 791, 974, 1863, 2362, 2636
BseGI	GGATG	5 cut(s)	175, 1010, 1155, 1859, 2685
BseJI	GATNNNNATC	1 cut(s)	2613
BseLI	CCNNNNNNNGG	3 cut(s)	182, 861, 1717
BseMI	GCAATG	3 cut(s)	382, 1155, 2377
BseMII	CTCAG	4 cut(s)	981, 1548, 1569, 1674
BseNI	ACTGG	3 cut(s)	1552, 1768, 2147
BseRI	GAGGAG	4 cut(s)	293, 447, 760, 1294
BseSI	GKGCMC	2 cut(s)	799, 2142
Bsh1236I	CGCG	1 cut(s)	759
Bsh1285I	CGRYCG	1 cut(s)	1024
BshFI	GGCC	5 cut(s)	85, 251, 826, 1721, 2337
BshNI	GGYRCC	1 cut(s)	1518
BsiEI	CGRYCG	1 cut(s)	1024
BsiHKAI	GWGCWC	2 cut(s)	17, 1974
BsiSI	CCGG	1 cut(s)	176
BslFI	GGGAC	1 cut(s)	2249
BslI	CCNNNNNNNGG	3 cut(s)	182, 861, 1717
BsmAI	GTCTC	6 cut(s)	226, 429, 612, 747, 1583, 2177
BsmBI	CGTCTC	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	2249
BsmI	GAATGC	1 cut(s)	1237
BsnI	GGCC	5 cut(s)	85, 251, 826, 1721, 2337
Bso31I	GGTCTC	1 cut(s)	747
Bsp1286I	GDGCHC	4 cut(s)	17, 799, 1974, 2142
Bsp1407I	TGTACA	1 cut(s)	1141
Bsp19I	CCATGG	1 cut(s)	1863
BspACI	CCGC	7 cut(s)	31, 149, 155, 757, 1179, 1270, 1793
BspANI	GGCC	5 cut(s)	85, 251, 826, 1721, 2337
BspCNI	CTCAG	4 cut(s)	982, 1549, 1570, 1673
BspFNI	CGCG	1 cut(s)	759
BspLI	GGNNCC	4 cut(s)	252, 825, 1520, 2391
BspMAI	CTGCAG	1 cut(s)	1576
BspMI	ACCTGC	2 cut(s)	2291, 2418
BspPI	GGATC	5 cut(s)	1062, 1864, 1891, 2384, 2397
BspT107I	GGYRCC	1 cut(s)	1518
BspTNI	GGTCTC	1 cut(s)	747
BsrDI	GCAATG	3 cut(s)	382, 1155, 2377
BsrGI	TGTACA	1 cut(s)	1141
BsrI	ACTGG	3 cut(s)	1552, 1768, 2147
BssECI	CCNNGG	6 cut(s)	176, 791, 974, 1863, 2362, 2636
BssNI	GRCGYC	1 cut(s)	1519
BssT1I	CCWWGG	4 cut(s)	791, 974, 1863, 2362
Bst2UI	CCWGG	4 cut(s)	1048, 1197, 2038, 2637
Bst4CI	ACNGT	5 cut(s)	1124, 1834, 1986, 2473, 2731
Bst6I	CTCTTC	2 cut(s)	93, 974
BstACI	GRCGYC	1 cut(s)	1519
BstAUI	TGTACA	1 cut(s)	1141
BstC8I	GCNNGC	2 cut(s)	1428, 2076
BstDEI	CTNAG	9 cut(s)	110, 324, 990, 1524, 1557, 1578, 1660, 1949, 2580
BstDSI	CCRYGG	1 cut(s)	1863
BstEII	GGTNACC	2 cut(s)	786, 1550
BstF5I	GGATG	5 cut(s)	175, 1010, 1155, 1859, 2685
BstFNI	CGCG	1 cut(s)	759
BstH2I	RGCGCY	1 cut(s)	1522
BstHHI	GCGC	1 cut(s)	1521
BstMAI	GTCTC	6 cut(s)	226, 429, 612, 747, 1583, 2177
BstMCI	CGRYCG	1 cut(s)	1024
BstMWI	GCNNNNNNNGC	4 cut(s)	921, 1178, 1466, 2111
BstNI	CCWGG	4 cut(s)	1048, 1197, 2038, 2637
BstNSI	RCATGY	3 cut(s)	1910, 1978, 2078
BstPI	GGTNACC	2 cut(s)	786, 1550
BstSCI	CCNGG	5 cut(s)	175, 1046, 1195, 2036, 2635
BstSFI	CTRYAG	1 cut(s)	1572
BstSLI	GKGCMC	2 cut(s)	799, 2142
BstUI	CGCG	1 cut(s)	759
BstV2I	GAAGAC	2 cut(s)	348, 877
BstX2I	RGATCY	3 cut(s)	1054, 1896, 2389
BstYI	RGATCY	3 cut(s)	1054, 1896, 2389
Bsu36I	CCTNAGG	1 cut(s)	1524
BsuI	GTATCC	1 cut(s)	1141
BsuRI	GGCC	5 cut(s)	85, 251, 826, 1721, 2337
BtgI	CCRYGG	1 cut(s)	1863
BtsCI	GGATG	5 cut(s)	175, 1010, 1155, 1859, 2685
BtsIMutI	CAGTG	4 cut(s)	1572, 1982, 2140, 2736
BveI	ACCTGC	2 cut(s)	2291, 2418
Cac8I	GCNNGC	2 cut(s)	1428, 2076
CaiI	CAGNNNCTG	2 cut(s)	1571, 2132
CfoI	GCGC	1 cut(s)	1521
Cfr13I	GGNCC	5 cut(s)	250, 547, 824, 1694, 2335
CseI	GACGC	2 cut(s)	735, 2421
Csp6I	GTAC	4 cut(s)	173, 330, 455, 1142
CviQI	GTAC	4 cut(s)	173, 330, 455, 1142
DdeI	CTNAG	9 cut(s)	110, 324, 990, 1524, 1557, 1578, 1660, 1949, 2580
DinI	GGCGCC	1 cut(s)	1520
DraI	TTTAAA	1 cut(s)	2772
Eam1104I	CTCTTC	2 cut(s)	93, 974
EarI	CTCTTC	2 cut(s)	93, 974
EciI	GGCGGA	1 cut(s)	164
Eco130I	CCWWGG	4 cut(s)	791, 974, 1863, 2362
Eco147I	AGGCCT	1 cut(s)	85
Eco31I	GGTCTC	1 cut(s)	747
Eco32I	GATATC	1 cut(s)	1644
Eco47I	GGWCC	2 cut(s)	547, 1694
Eco57I	CTGAAG	4 cut(s)	1964, 2181, 2280, 2481
Eco81I	CCTNAGG	1 cut(s)	1524
Eco91I	GGTNACC	2 cut(s)	786, 1550
EcoO109I	RGGNCCY	1 cut(s)	824
EcoO65I	GGTNACC	2 cut(s)	786, 1550
EcoRII	CCWGG	4 cut(s)	1046, 1195, 2036, 2635
EcoRV	GATATC	1 cut(s)	1644
EcoT14I	CCWWGG	4 cut(s)	791, 974, 1863, 2362
EcoT22I	ATGCAT	2 cut(s)	1069, 1885
EgeI	GGCGCC	1 cut(s)	1520
EheI	GGCGCC	1 cut(s)	1520
ErhI	CCWWGG	4 cut(s)	791, 974, 1863, 2362
Esp3I	CGTCTC	1 cut(s)	226
FaqI	GGGAC	1 cut(s)	2249
FauI	CCCGC	2 cut(s)	1277, 1786
FbaI	TGATCA	1 cut(s)	2749
FblI	GTMKAC	2 cut(s)	905, 1764
FokI	GGATG	5 cut(s)	182, 997, 1162, 1846, 2692
FspBI	CTAG	7 cut(s)	24, 75, 429, 975, 1089, 1754, 2100
GlaI	GCGC	1 cut(s)	1520
GsuI	CTGGAG	4 cut(s)	283, 1218, 1988, 2588
HaeII	RGCGCY	1 cut(s)	1522
HaeIII	GGCC	5 cut(s)	85, 251, 826, 1721, 2337
HapII	CCGG	1 cut(s)	176
HgaI	GACGC	2 cut(s)	735, 2421
HhaI	GCGC	1 cut(s)	1521
Hin1I	GRCGYC	1 cut(s)	1519
Hin6I	GCGC	1 cut(s)	1519
HinP1I	GCGC	1 cut(s)	1519
HincII	GTYRAC	3 cut(s)	1243, 1537, 1765
HindII	GTYRAC	3 cut(s)	1243, 1537, 1765
HindIII	AAGCTT	4 cut(s)	653, 1785, 1946, 2234
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	8 cut(s)	239, 780, 953, 1020, 1562, 2086, 2315, 2395
Hpy166II	GTNNAC	7 cut(s)	906, 1028, 1243, 1537, 1609, 1765, 2696
Hpy8I	GTNNAC	7 cut(s)	906, 1028, 1243, 1537, 1609, 1765, 2696
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	9 cut(s)	112, 176, 283, 388, 978, 1414, 1696, 1941, 2593
HpyCH4III	ACNGT	5 cut(s)	1124, 1834, 1986, 2473, 2731
HpyCH4IV	ACGT	2 cut(s)	314, 1539
HpyF10VI	GCNNNNNNNGC	4 cut(s)	921, 1178, 1466, 2111
HpyF3I	CTNAG	9 cut(s)	110, 324, 990, 1524, 1557, 1578, 1660, 1949, 2580
HpySE526I	ACGT	2 cut(s)	314, 1539
Hsp92I	GRCGYC	1 cut(s)	1519
HspAI	GCGC	1 cut(s)	1519
KasI	GGCGCC	1 cut(s)	1518
Ksp22I	TGATCA	1 cut(s)	2749
LmnI	GCTCC	4 cut(s)	302, 1969, 2245, 2584
LweI	GCATC	6 cut(s)	1076, 1404, 1447, 1892, 2113, 2419
MaeI	CTAG	7 cut(s)	24, 75, 429, 975, 1089, 1754, 2100
MaeII	ACGT	2 cut(s)	314, 1539
MaeIII	GTNAC	6 cut(s)	786, 1550, 1774, 2092, 2464, 2725
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	3 cut(s)	1054, 1896, 2389
MhlI	GDGCHC	4 cut(s)	17, 799, 1974, 2142
Mly113I	GGCGCC	1 cut(s)	1519
MlyI	GAGTC	8 cut(s)	389, 476, 503, 953, 1000, 1001, 1238, 2552
MmeI	TCCRAC	2 cut(s)	255, 363
Mph1103I	ATGCAT	2 cut(s)	1069, 1885
MroXI	GAANNNNTTC	3 cut(s)	1299, 1668, 2007
MslI	CAYNNNNRTG	2 cut(s)	600, 2202
MspA1I	CMGCKG	1 cut(s)	1577
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	5 cut(s)	177, 1048, 1197, 2038, 2637
MunI	CAATTG	1 cut(s)	486
Mva1269I	GAATGC	1 cut(s)	1237
MvaI	CCWGG	4 cut(s)	1048, 1197, 2038, 2637
MvnI	CGCG	1 cut(s)	759
MwoI	GCNNNNNNNGC	4 cut(s)	921, 1178, 1466, 2111
NarI	GGCGCC	1 cut(s)	1519
NciI	CCSGG	1 cut(s)	177
NcoI	CCATGG	1 cut(s)	1863
NlaIV	GGNNCC	4 cut(s)	252, 825, 1520, 2391
NmuCI	GTSAC	4 cut(s)	786, 1550, 2092, 2725
NsiI	ATGCAT	2 cut(s)	1069, 1885
NspI	RCATGY	3 cut(s)	1910, 1978, 2078
PaeI	GCATGC	1 cut(s)	2078
PaqCI	CACCTGC	1 cut(s)	2291
PceI	AGGCCT	1 cut(s)	85
PciI	ACATGT	1 cut(s)	1974
PctI	GAATGC	1 cut(s)	1237
PdmI	GAANNNNTTC	3 cut(s)	1299, 1668, 2007
PfeI	GAWTC	8 cut(s)	215, 644, 695, 719, 1334, 1613, 1669, 2129
PflFI	GACNNNGTC	1 cut(s)	991
PfoI	TCCNGGA	1 cut(s)	1195
Ple19I	CGATCG	1 cut(s)	1024
PleI	GAGTC	8 cut(s)	388, 476, 502, 952, 1000, 1000, 1238, 2552
PluTI	GGCGCC	1 cut(s)	1522
PpsI	GAGTC	8 cut(s)	388, 476, 502, 952, 1000, 1000, 1238, 2552
PscI	ACATGT	1 cut(s)	1974
Psp6I	CCWGG	4 cut(s)	1046, 1195, 2036, 2635
PspEI	GGTNACC	2 cut(s)	786, 1550
PspGI	CCWGG	4 cut(s)	1046, 1195, 2036, 2635
PspN4I	GGNNCC	4 cut(s)	252, 825, 1520, 2391
PspPI	GGNCC	5 cut(s)	250, 547, 824, 1694, 2335
PstI	CTGCAG	1 cut(s)	1576
PstNI	CAGNNNCTG	2 cut(s)	1571, 2132
PsuI	RGATCY	3 cut(s)	1054, 1896, 2389
PsyI	GACNNNGTC	1 cut(s)	991
PvuI	CGATCG	1 cut(s)	1024
PvuII	CAGCTG	1 cut(s)	1577
RsaI	GTAC	4 cut(s)	174, 331, 456, 1143
RsaNI	GTAC	4 cut(s)	173, 330, 455, 1142
RseI	CAYNNNNRTG	2 cut(s)	600, 2202
SalI	GTCGAC	1 cut(s)	1763
Sau96I	GGNCC	5 cut(s)	250, 547, 824, 1694, 2335
ScaI	AGTACT	1 cut(s)	331
SchI	GAGTC	8 cut(s)	389, 476, 503, 953, 1000, 1001, 1238, 2552
ScrFI	CCNGG	5 cut(s)	177, 1048, 1197, 2038, 2637
SduI	GDGCHC	4 cut(s)	17, 799, 1974, 2142
SfaNI	GCATC	6 cut(s)	1076, 1404, 1447, 1892, 2113, 2419
SfcI	CTRYAG	1 cut(s)	1572
SfoI	GGCGCC	1 cut(s)	1520
SinI	GGWCC	2 cut(s)	547, 1694
SmiMI	CAYNNNNRTG	2 cut(s)	600, 2202
SmlI	CTYRAG	2 cut(s)	916, 1452
SmoI	CTYRAG	2 cut(s)	916, 1452
SphI	GCATGC	1 cut(s)	2078
SseBI	AGGCCT	1 cut(s)	85
SsiI	CCGC	7 cut(s)	31, 149, 155, 757, 1179, 1270, 1793
SspDI	GGCGCC	1 cut(s)	1518
SspI	AATATT	1 cut(s)	1300
SspMI	CTAG	7 cut(s)	24, 75, 429, 975, 1089, 1754, 2100
StuI	AGGCCT	1 cut(s)	85
StyD4I	CCNGG	5 cut(s)	175, 1046, 1195, 2036, 2635
StyI	CCWWGG	4 cut(s)	791, 974, 1863, 2362
TaaI	ACNGT	5 cut(s)	1124, 1834, 1986, 2473, 2731
TaiI	ACGT	2 cut(s)	317, 1542
TaqI	TCGA	4 cut(s)	192, 743, 1764, 2631
TaqII	GACCGA	1 cut(s)	774
TatI	WGTACW	3 cut(s)	329, 454, 1141
TauI	GCSGC	1 cut(s)	34
TfiI	GAWTC	8 cut(s)	215, 644, 695, 719, 1334, 1613, 1669, 2129
TscAI	CASTG	4 cut(s)	1572, 1989, 2147, 2736
TseFI	GTSAC	4 cut(s)	786, 1550, 2092, 2725
Tsp45I	GTSAC	4 cut(s)	786, 1550, 2092, 2725
TspDTI	ATGAA	8 cut(s)	51, 111, 582, 1277, 1479, 1621, 1752, 2438
TspGWI	ACGGA	3 cut(s)	353, 1228, 1237
TspRI	CASTG	4 cut(s)	1572, 1989, 2147, 2736
Tth111I	GACNNNGTC	1 cut(s)	991
VpaK11BI	GGWCC	2 cut(s)	547, 1694
XapI	RAATTY	4 cut(s)	669, 1346, 2149, 2765
XbaI	TCTAGA	1 cut(s)	1753
XceI	RCATGY	3 cut(s)	1910, 1978, 2078
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2044
XmaJI	CCTAGG	1 cut(s)	974
XmiI	GTMKAC	2 cut(s)	905, 1764
XmnI	GAANNNNTTC	3 cut(s)	1299, 1668, 2007
XspI	CTAG	7 cut(s)	24, 75, 429, 975, 1089, 1754, 2100
ZrmI	AGTACT	1 cut(s)	331
Zsp2I	ATGCAT	2 cut(s)	1069, 1885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.