Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006750

Physical Location & Seq

Genomic Coordinates Forward (+)

10335798 .. 10341729

Gene Structure 5932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36713

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAGGGATGTGCATCACTGTCAGCGAGTAAAATTGCTGTTTCGAGCGGGACATATCAGTAGGAGTGAAATACAAAGGTCCTTACAAGGTTTTCAGACAGTTGCTATTTTCATCCAGACTGGTGACTCCGAGAAATCAGTGGCTGCGGCTGAGAGTATTGAGACAATAAGTGATGTTGTGAACGATTCTCCTAACAAGATTTTCATTGGTGGGATATCAAAGGCTCTTTCCTCAGAAATGCTTGTGGAAATCGTTAGTGTCTTTGGACCTTTGAAGACACACCATTTTGAGGCCAATGAGGAACTTAATGAACCATGTGCTTTTCTAGAGTACTATGGTCTGAATGGTATAAAATTGGGAGGGAGAGTGCTAACTGTGGTTCAGGCAATTCGTAGTGGCTCATCCATGGTAAATAGTGGAAATGCATCACTCTATGAGATCCCAGAACATGCAAAGCCACTTCTCAAACAACCTTCACATATACTGAAGCTTCGAAATGTGTTCAATCTGGAGCACATGTCATCACTGTCTGAACAAGAGATTGAAGAAGTTCTGGAAGATGTGCGATTAGGATGTGCCAGGTTTGGCATGGTTAAATCTGTAAAGATTGTCAAGCATGCAAACAATCACATTGTCACCACTAGAGCGTGTGAAGCTGTCAATGATGCAGAATCTGGTGGGCACAGGCAACATTTGTGTTCTGAAGAAAAAGGGGCAAAAACGGAGACTTTGGACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0006913 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032239 GO:0032241 GO:0032386 GO:0032388 GO:0032879 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046822 GO:0046824 GO:0046831 GO:0046833 GO:0046907 GO:0048518 GO:0050789 GO:0051049 GO:0051050 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0065007 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

246

Amino Acids

27.13

Weight (kDa)

6.18

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33435
fragaria_vesca	FvH4_4g04160 FvH4_4g04160 FvH4_4g04160
malus_domestica	MD13G1218500.v1.1
prunus_persica	Prupe.1G045200_v2.0.a1 Prupe.1G045200_v2.0.a1
pyrus_communis	pycom13g19340
rosa_chinensis	RchiOBHm_Chr4g0394621 RchiOBHm_Chr4g0394661
rosa_laevigata	RLG00000009679 RLG00000009684
rosa_multiflora	Rmu_sc0005424.1_g000012 Rmu_sc0006945.1_g000040
rosa_roxburghii	Rroxscaffold_5G00339670
rosa_rugosa	Rorug03G0363100.1 Rorug03G0363500.1 Rorug03G0363600.1 Rorug03G0363700.1
rosa_samantha	Rh4AG053300 Rh4AG054000 Rh4BG051200 Rh4BG051700 Rh4CG058500 Rh4DG050200
rosa_wichuraiana	Rw4G004300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	47
AciI	CCGC	2 cut(s)	47, 146
AclWI	GGATC	1 cut(s)	433
AcuI	CTGAAG	2 cut(s)	506, 723
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	1 cut(s)	289
AflIII	ACRYGT	1 cut(s)	516
AgsI	TTSAA	3 cut(s)	274, 505, 545
AjnI	CCWGG	1 cut(s)	578
AluBI	AGCT	2 cut(s)	490, 656
AluI	AGCT	2 cut(s)	490, 656
Alw21I	GWGCWC	1 cut(s)	516
Alw26I	GTCTC	2 cut(s)	155, 719
AlwI	GGATC	1 cut(s)	433
AlwNI	CAGNNNCTG	2 cut(s)	143, 674
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	143
Asp700I	GAANNNNTTC	1 cut(s)	549
AspS9I	GGNCC	3 cut(s)	78, 266, 733
AsuHPI	GGTGA	2 cut(s)	134, 628
AsuII	TTCGAA	1 cut(s)	493
AvaII	GGWCC	3 cut(s)	78, 266, 733
BaeGI	GKGCMC	1 cut(s)	684
BbsI	GAAGAC	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	516
BbvI	GCAGC	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	580
BcoDI	GTCTC	2 cut(s)	155, 719
BfaI	CTAG	2 cut(s)	326, 642
BisI	GCNGC	2 cut(s)	144, 147
BlsI	GCNGC	2 cut(s)	145, 148
BmcAI	AGTACT	1 cut(s)	332
Bme1390I	CCNGG	1 cut(s)	580
Bme18I	GGWCC	3 cut(s)	78, 266, 733
BmgT120I	GGNCC	3 cut(s)	78, 266, 733
BmrFI	CCNGG	1 cut(s)	580
BmsI	GCATC	3 cut(s)	22, 434, 655
BpiI	GAAGAC	1 cut(s)	281
BpmI	CTGGAG	1 cut(s)	530
Bpu14I	TTCGAA	1 cut(s)	493
BsaBI	GATNNNNATC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	405
BsaXI	ACNNNNNCTCC	4 cut(s)	351, 381, 503, 533
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse1I	ACTGG	1 cut(s)	124
Bse8I	GATNNNNATC	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	580
BseDI	CCNNGG	1 cut(s)	405
BseGI	GGATG	4 cut(s)	13, 111, 401, 578
BseJI	GATNNNNATC	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseMII	CTCAG	2 cut(s)	141, 246
BseNI	ACTGG	1 cut(s)	124
BseSI	GKGCMC	1 cut(s)	684
BseXI	GCAGC	1 cut(s)	130
BshFI	GGCC	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	516
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	289
BsmAI	GTCTC	2 cut(s)	155, 719
BsmFI	GGGAC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	293
Bsp119I	TTCGAA	1 cut(s)	493
Bsp1286I	GDGCHC	2 cut(s)	516, 684
Bsp143I	GATC	1 cut(s)	438
Bsp19I	CCATGG	1 cut(s)	405
BspACI	CCGC	2 cut(s)	47, 146
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	2 cut(s)	142, 245
BspPI	GGATC	1 cut(s)	433
BspT104I	TTCGAA	1 cut(s)	493
BsrBI	CCGCTC	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	405
BssMI	GATC	1 cut(s)	438
BssT1I	CCWWGG	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	580
Bst4CI	ACNGT	4 cut(s)	20, 100, 376, 528
BstBI	TTCGAA	1 cut(s)	493
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	2 cut(s)	150, 232
BstDSI	CCRYGG	1 cut(s)	405
BstF5I	GGATG	4 cut(s)	13, 111, 401, 578
BstKTI	GATC	1 cut(s)	441
BstMAI	GTCTC	2 cut(s)	155, 719
BstMBI	GATC	1 cut(s)	438
BstMWI	GCNNNNNNNGC	1 cut(s)	653
BstNI	CCWGG	1 cut(s)	580
BstNSI	RCATGY	3 cut(s)	452, 520, 620
BstSCI	CCNGG	1 cut(s)	578
BstSLI	GKGCMC	1 cut(s)	684
BstV1I	GCAGC	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	281
BstX2I	RGATCY	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	293
BtgI	CCRYGG	1 cut(s)	405
BtsCI	GGATG	4 cut(s)	13, 111, 401, 578
BtsIMutI	CAGTG	3 cut(s)	16, 144, 524
Cac8I	GCNNGC	1 cut(s)	618
CaiI	CAGNNNCTG	2 cut(s)	143, 674
Cfr13I	GGNCC	3 cut(s)	78, 266, 733
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	6 cut(s)	315, 406, 449, 517, 589, 617
CviJI	RGCY	8 cut(s)	143, 149, 224, 293, 399, 457, 490, 656
CviKI_1	RGCY	8 cut(s)	143, 149, 224, 293, 399, 457, 490, 656
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	2 cut(s)	150, 232
DpnI	GATC	1 cut(s)	440
DpnII	GATC	1 cut(s)	438
Eco130I	CCWWGG	1 cut(s)	405
Eco32I	GATATC	1 cut(s)	216
Eco47I	GGWCC	3 cut(s)	78, 266, 733
Eco57I	CTGAAG	2 cut(s)	506, 723
EcoO109I	RGGNCCY	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	578
EcoRV	GATATC	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	405
EcoT22I	ATGCAT	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	405
FaeI	CATG	6 cut(s)	318, 409, 452, 520, 592, 620
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	6 cut(s)	314, 405, 448, 516, 588, 616
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	2 cut(s)	144, 147
FokI	GGATG	4 cut(s)	20, 98, 388, 585
Fsp4HI	GCNGC	2 cut(s)	144, 147
FspBI	CTAG	2 cut(s)	326, 642
GluI	GCNGC	2 cut(s)	144, 147
GsuI	CTGGAG	1 cut(s)	530
HaeIII	GGCC	1 cut(s)	293
Hin1II	CATG	6 cut(s)	318, 409, 452, 520, 592, 620
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	3 cut(s)	125, 185, 671
HphI	GGTGA	2 cut(s)	134, 628
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	6 cut(s)	96, 130, 235, 342, 532, 703
Hpy188III	TCNNGA	4 cut(s)	115, 326, 509, 554
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	1 cut(s)	483
HpyCH4III	ACNGT	4 cut(s)	20, 100, 376, 528
HpyCH4V	TGCA	5 cut(s)	13, 425, 452, 620, 668
HpyF10VI	GCNNNNNNNGC	1 cut(s)	653
HpyF3I	CTNAG	2 cut(s)	150, 232
Hsp92II	CATG	6 cut(s)	318, 409, 452, 520, 592, 620
Kzo9I	GATC	1 cut(s)	438
LmnI	GCTCC	1 cut(s)	511
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	3 cut(s)	22, 434, 655
MaeI	CTAG	2 cut(s)	326, 642
MaeIII	GTNAC	2 cut(s)	122, 634
MalI	GATC	1 cut(s)	440
MbiI	CCGCTC	1 cut(s)	47
MboI	GATC	1 cut(s)	438
MboII	GAAGA	4 cut(s)	286, 557, 569, 716
MflI	RGATCY	1 cut(s)	438
MhlI	GDGCHC	2 cut(s)	516, 684
MluCI	AATT	3 cut(s)	32, 353, 387
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	4 cut(s)	241, 283, 292, 353
Mph1103I	ATGCAT	1 cut(s)	427
MroXI	GAANNNNTTC	1 cut(s)	549
MseI	TTAA	2 cut(s)	306, 594
MspR9I	CCNGG	1 cut(s)	580
MvaI	CCWGG	1 cut(s)	580
MwoI	GCNNNNNNNGC	1 cut(s)	653
NcoI	CCATGG	1 cut(s)	405
NdeII	GATC	1 cut(s)	438
NlaIII	CATG	6 cut(s)	318, 409, 452, 520, 592, 620
NmuCI	GTSAC	2 cut(s)	122, 634
NsiI	ATGCAT	1 cut(s)	427
NspI	RCATGY	3 cut(s)	452, 520, 620
NspV	TTCGAA	1 cut(s)	493
PaeI	GCATGC	1 cut(s)	620
PciI	ACATGT	1 cut(s)	516
PdmI	GAANNNNTTC	1 cut(s)	549
PfeI	GAWTC	2 cut(s)	185, 671
PkrI	GCNGC	2 cut(s)	145, 148
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PpuMI	RGGWCCY	1 cut(s)	78
PscI	ACATGT	1 cut(s)	516
Psp5II	RGGWCCY	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	578
PspGI	CCWGG	1 cut(s)	578
PspPI	GGNCC	3 cut(s)	78, 266, 733
PspPPI	RGGWCCY	1 cut(s)	78
PstNI	CAGNNNCTG	2 cut(s)	143, 674
PsuI	RGATCY	1 cut(s)	438
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SaqAI	TTAA	2 cut(s)	306, 594
SatI	GCNGC	2 cut(s)	144, 147
Sau3AI	GATC	1 cut(s)	438
Sau96I	GGNCC	3 cut(s)	78, 266, 733
ScaI	AGTACT	1 cut(s)	332
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	580
SduI	GDGCHC	2 cut(s)	516, 684
SetI	ASST	7 cut(s)	80, 91, 271, 475, 492, 584, 658
SfaNI	GCATC	3 cut(s)	22, 434, 655
SfuI	TTCGAA	1 cut(s)	493
SinI	GGWCC	3 cut(s)	78, 266, 733
SphI	GCATGC	1 cut(s)	620
Sse9I	AATT	3 cut(s)	32, 353, 387
SsiI	CCGC	2 cut(s)	47, 146
SspMI	CTAG	2 cut(s)	326, 642
StyD4I	CCNGG	1 cut(s)	578
StyI	CCWWGG	1 cut(s)	405
TaaI	ACNGT	4 cut(s)	20, 100, 376, 528
TaqI	TCGA	2 cut(s)	43, 493
TasI	AATT	3 cut(s)	32, 353, 387
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	2 cut(s)	185, 671
Tru1I	TTAA	2 cut(s)	306, 594
Tru9I	TTAA	2 cut(s)	306, 594
TscAI	CASTG	3 cut(s)	23, 144, 531
TseFI	GTSAC	2 cut(s)	122, 634
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	2 cut(s)	122, 634
TspDTI	ATGAA	3 cut(s)	100, 193, 324
TspGWI	ACGGA	1 cut(s)	737
TspRI	CASTG	3 cut(s)	23, 144, 531
VpaK11BI	GGWCC	3 cut(s)	78, 266, 733
XbaI	TCTAGA	1 cut(s)	325
XceI	RCATGY	3 cut(s)	452, 520, 620
XcmI	CCANNNNNNNNNTGG	1 cut(s)	586
XmnI	GAANNNNTTC	1 cut(s)	549
XspI	CTAG	2 cut(s)	326, 642
ZrmI	AGTACT	1 cut(s)	332
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.