Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006750

Physical Location & Seq

Genomic Coordinates Reverse (-)

56345858 .. 56347542

Gene Structure 1685 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009679

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGCCTCCGCCGCGGAGCAGTCCTCCAAGAGAATATTGTCTTCCAAGACCCAAGCAGTTTCCGATATTGGGTTCCTCACCAGTCAGCTCAGTGGCCTCAAAATCTCCTACGACGTGTCGTCTCAGCTCCCCTAGTCCCGTCTTCACTCCTTCCCTCCCTGGCTTTCAGCACATTGTTGCTCAATTTGTTCTCTTCTGGAAAGAAAGCAACAAGGCAAACAAGATTTCTTTCTCGGCCCACAAGACCAAGAAGTTGCAGTTTGTGAACCTGCAGTACAAGAGGATTTGGTGGAGCAGGGAGCGCTTTTTGAAGCTGCGCTTGTCAATCAAAGCAATCAAGACCATAGAGAAGAATGGACTGGAAGCCGTTGCCAAGAAGGCCGGGATTGATCTTCAATCTGGTGGGCACTGGCAAAATTTATGTTCTGAAGAAAAAGGAGCAAAAACAGAGACTTTGGACGAACATATTGATAATGATGGCAAGGAAATGAGTGGAGTGAAGCTTACAGGGGAACTTAAAGAAGATGAAGTCCCAGAAAGTAATTGCTTTGGTTATGATAAACCAGCGGATGATTTTGTAGAGGACAAGTCATGTCAAATGGGCCAACCAGATAAAGGTATTGAAATCCAACGAAGCAATGACTTAGCTAATAGGGATCCCAAAGAACTGACCGACCTGCCAAACAGCATGAAAGATGCGTCAGAGTGTTATGATGATAAAACTTCTGAAGTTCCAACTGTAGATAATTCTATTCTAGAGAAAGTTGATGGTAAGAAACAAGAGACTTTTGCTGGAACAGATGACAATGTGGGAATAGAAACAGACTCTATTCTGGAGAGTGGAACTAAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0006913 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032239 GO:0032241 GO:0032386 GO:0032388 GO:0032879 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046822 GO:0046824 GO:0046831 GO:0046833 GO:0046907 GO:0048518 GO:0050789 GO:0051049 GO:0051050 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0065007 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

285

Amino Acids

31.64

Weight (kDa)

5.6

Isoelectric Point (pI)

60.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28	PF00830	68 - 118	3.3e-12	Ribosomal L28 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33435
fragaria_vesca	FvH4_4g04160 FvH4_4g04160 FvH4_4g04160
malus_domestica	MD13G1218500.v1.1
prunus_persica	Prupe.1G045200_v2.0.a1 Prupe.1G045200_v2.0.a1
pyrus_communis	pycom13g19340
rosa_chinensis	RchiOBHm_Chr4g0394621 RchiOBHm_Chr4g0394661
rosa_laevigata	RLG00000009679 RLG00000009684
rosa_multiflora	Rmu_sc0005424.1_g000012 Rmu_sc0006945.1_g000040
rosa_roxburghii	Rroxscaffold_5G00339670
rosa_rugosa	Rorug03G0363100.1 Rorug03G0363500.1 Rorug03G0363600.1 Rorug03G0363700.1
rosa_samantha	Rh4AG053300 Rh4AG054000 Rh4BG051200 Rh4BG051700 Rh4CG058500 Rh4DG050200
rosa_wichuraiana	Rw4G004300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	276, 684
AccII	CGCG	1 cut(s)	13
AciI	CCGC	4 cut(s)	8, 11, 13, 566
AclWI	GGATC	2 cut(s)	650, 663
AcsI	RAATTY	1 cut(s)	415
AcuI	CTGAAG	2 cut(s)	447, 747
AfaI	GTAC	1 cut(s)	275
AfeI	AGCGCT	1 cut(s)	302
AfiI	CCNNNNNNNGG	2 cut(s)	68, 614
AflIII	ACRYGT	1 cut(s)	113
AgsI	TTSAA	3 cut(s)	310, 395, 623
AhdI	GACNNNNNGTC	1 cut(s)	117
AjiI	CACGTC	1 cut(s)	114
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	5 cut(s)	87, 126, 313, 502, 647
AluI	AGCT	5 cut(s)	87, 126, 313, 502, 647
Alw26I	GTCTC	3 cut(s)	125, 443, 776
AlwI	GGATC	2 cut(s)	650, 663
Aor51HI	AGCGCT	1 cut(s)	302
AoxI	GGCC	4 cut(s)	93, 234, 378, 601
ApeKI	GCWGC	1 cut(s)	313
ApoI	RAATTY	1 cut(s)	415
AspLEI	GCGC	2 cut(s)	303, 318
AspS9I	GGNCC	2 cut(s)	235, 601
AsuC2I	CCSGG	1 cut(s)	382
AsuHPI	GGTGA	1 cut(s)	69
BaeGI	GKGCMC	1 cut(s)	408
BamHI	GGATCC	1 cut(s)	655
BbsI	GAAGAC	2 cut(s)	32, 133
BbvI	GCAGC	1 cut(s)	300
BccI	CCATC	2 cut(s)	470, 761
BceAI	ACGGC	1 cut(s)	350
BciT130I	CCWGG	1 cut(s)	159
BcnI	CCSGG	1 cut(s)	382
BcoDI	GTCTC	3 cut(s)	125, 443, 776
BfaI	CTAG	3 cut(s)	132, 755, 853
BfmI	CTRYAG	2 cut(s)	269, 738
BfoI	RGCGCY	1 cut(s)	304
BfuAI	ACCTGC	2 cut(s)	276, 684
BglI	GCCNNNNNGGC	1 cut(s)	377
BisI	GCNGC	2 cut(s)	11, 314
BlsI	GCNGC	2 cut(s)	12, 315
Bme1390I	CCNGG	2 cut(s)	159, 382
BmeRI	GACNNNNNGTC	1 cut(s)	117
BmgBI	CACGTC	1 cut(s)	114
BmgT120I	GGNCC	2 cut(s)	235, 601
BmiI	GGNNCC	2 cut(s)	73, 657
BmrFI	CCNGG	2 cut(s)	159, 382
BmsI	GCATC	1 cut(s)	685
BpiI	GAAGAC	2 cut(s)	32, 133
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
BpmI	CTGGAG	1 cut(s)	854
BpuMI	CCSGG	1 cut(s)	382
BsaJI	CCNNGG	2 cut(s)	11, 157
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 614
Bse1I	ACTGG	3 cut(s)	80, 363, 413
Bse3DI	GCAATG	1 cut(s)	643
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	11, 157
BseGI	GGATG	1 cut(s)	574
BseLI	CCNNNNNNNGG	2 cut(s)	68, 614
BseMI	GCAATG	1 cut(s)	643
BseMII	CTCAG	2 cut(s)	102, 136
BseNI	ACTGG	3 cut(s)	80, 363, 413
BseSI	GKGCMC	1 cut(s)	408
BseXI	GCAGC	1 cut(s)	300
Bsh1236I	CGCG	1 cut(s)	13
BshFI	GGCC	4 cut(s)	95, 236, 380, 603
BsiSI	CCGG	1 cut(s)	381
BslFI	GGGAC	2 cut(s)	120, 515
BslI	CCNNNNNNNGG	2 cut(s)	68, 614
BsmAI	GTCTC	3 cut(s)	125, 443, 776
BsmBI	CGTCTC	1 cut(s)	125
BsmFI	GGGAC	2 cut(s)	120, 515
BsnI	GGCC	4 cut(s)	95, 236, 380, 603
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp143I	GATC	2 cut(s)	388, 655
BspACI	CCGC	4 cut(s)	8, 11, 13, 566
BspANI	GGCC	4 cut(s)	95, 236, 380, 603
BspCNI	CTCAG	2 cut(s)	101, 135
BspFNI	CGCG	1 cut(s)	13
BspLI	GGNNCC	2 cut(s)	73, 657
BspMAI	CTGCAG	1 cut(s)	273
BspMI	ACCTGC	2 cut(s)	276, 684
BspPI	GGATC	2 cut(s)	650, 663
BsrDI	GCAATG	1 cut(s)	643
BsrI	ACTGG	3 cut(s)	80, 363, 413
BssECI	CCNNGG	2 cut(s)	11, 157
BssMI	GATC	2 cut(s)	388, 655
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	739
Bst6I	CTCTTC	1 cut(s)	197
BstDEI	CTNAG	4 cut(s)	88, 122, 643, 846
BstDSI	CCRYGG	1 cut(s)	11
BstF5I	GGATG	1 cut(s)	574
BstFNI	CGCG	1 cut(s)	13
BstH2I	RGCGCY	1 cut(s)	304
BstHHI	GCGC	2 cut(s)	303, 318
BstKTI	GATC	2 cut(s)	391, 658
BstMAI	GTCTC	3 cut(s)	125, 443, 776
BstMBI	GATC	2 cut(s)	388, 655
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 300, 377
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	2 cut(s)	157, 380
BstSFI	CTRYAG	2 cut(s)	269, 738
BstSLI	GKGCMC	1 cut(s)	408
BstUI	CGCG	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	300
BstV2I	GAAGAC	2 cut(s)	32, 133
BstX2I	RGATCY	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	655
BsuRI	GGCC	4 cut(s)	95, 236, 380, 603
BtgI	CCRYGG	1 cut(s)	11
BtrI	CACGTC	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	574
BtsIMutI	CAGTG	2 cut(s)	96, 406
BveI	ACCTGC	2 cut(s)	276, 684
CfoI	GCGC	2 cut(s)	303, 318
Cfr13I	GGNCC	2 cut(s)	235, 601
Cfr42I	CCGCGG	1 cut(s)	14
CseI	GACGC	1 cut(s)	687
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	2 cut(s)	591, 688
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	4 cut(s)	88, 122, 643, 846
DpnI	GATC	2 cut(s)	390, 657
DpnII	GATC	2 cut(s)	388, 655
DriI	GACNNNNNGTC	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	197
Eam1105I	GACNNNNNGTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	197
Eco47III	AGCGCT	1 cut(s)	302
Eco57I	CTGAAG	2 cut(s)	447, 747
EcoRII	CCWGG	1 cut(s)	157
Esp3I	CGTCTC	1 cut(s)	125
FaeI	CATG	2 cut(s)	594, 691
FaiI	YATR	7 cut(s)	344, 421, 465, 555, 592, 689, 711
FalI	AAGNNNNNCTT	2 cut(s)	302, 334
FaqI	GGGAC	2 cut(s)	120, 515
FatI	CATG	2 cut(s)	590, 687
Fnu4HI	GCNGC	2 cut(s)	11, 314
FokI	GGATG	1 cut(s)	581
Fsp4HI	GCNGC	2 cut(s)	11, 314
FspBI	CTAG	3 cut(s)	132, 755, 853
GlaI	GCGC	2 cut(s)	302, 317
GluI	GCNGC	2 cut(s)	11, 314
GsuI	CTGGAG	1 cut(s)	854
HaeII	RGCGCY	1 cut(s)	304
HaeIII	GGCC	4 cut(s)	95, 236, 380, 603
HapII	CCGG	1 cut(s)	381
HgaI	GACGC	1 cut(s)	687
HhaI	GCGC	2 cut(s)	303, 318
Hin1II	CATG	2 cut(s)	594, 691
Hin6I	GCGC	2 cut(s)	301, 316
HinP1I	GCGC	2 cut(s)	301, 316
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	1 cut(s)	824
HpaII	CCGG	1 cut(s)	381
HphI	GGTGA	1 cut(s)	69
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	4 cut(s)	63, 427, 703, 727
Hpy188III	TCNNGA	4 cut(s)	196, 337, 755, 833
Hpy8I	GTNNAC	1 cut(s)	265
Hpy99I	CGWCG	1 cut(s)	115
HpyAV	CCTTC	2 cut(s)	159, 370
HpyCH4III	ACNGT	1 cut(s)	739
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	2 cut(s)	256, 271
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 300, 377
HpyF3I	CTNAG	4 cut(s)	88, 122, 643, 846
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	2 cut(s)	594, 691
HspAI	GCGC	2 cut(s)	301, 316
KspI	CCGCGG	1 cut(s)	14
Kzo9I	GATC	2 cut(s)	388, 655
LmnI	GCTCC	5 cut(s)	15, 131, 291, 298, 437
Lsp1109I	GCAGC	1 cut(s)	300
LweI	GCATC	1 cut(s)	685
MaeI	CTAG	3 cut(s)	132, 755, 853
MaeII	ACGT	1 cut(s)	113
MalI	GATC	2 cut(s)	390, 657
MboI	GATC	2 cut(s)	388, 655
MboII	GAAGA	7 cut(s)	32, 133, 184, 361, 383, 440, 533
MflI	RGATCY	1 cut(s)	655
MhlI	GDGCHC	1 cut(s)	408
MluCI	AATT	4 cut(s)	182, 415, 541, 745
MlyI	GAGTC	1 cut(s)	818
MmeI	TCCRAC	2 cut(s)	652, 758
MnlI	CCTC	7 cut(s)	15, 33, 85, 106, 164, 273, 574
MseI	TTAA	1 cut(s)	516
MspA1I	CMGCKG	2 cut(s)	13, 566
MspI	CCGG	1 cut(s)	381
MspR9I	CCNGG	2 cut(s)	159, 382
MvaI	CCWGG	1 cut(s)	159
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	3 cut(s)	10, 300, 377
NciI	CCSGG	1 cut(s)	382
NdeII	GATC	2 cut(s)	388, 655
NlaIII	CATG	2 cut(s)	594, 691
NlaIV	GGNNCC	2 cut(s)	73, 657
NmeAIII	GCCGAG	1 cut(s)	212
PkrI	GCNGC	2 cut(s)	12, 315
PleI	GAGTC	1 cut(s)	818
PpsI	GAGTC	1 cut(s)	818
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	73, 657
PspPI	GGNCC	2 cut(s)	235, 601
PsrI	GAACNNNNNNTAC	2 cut(s)	257, 289
PstI	CTGCAG	1 cut(s)	273
PsuI	RGATCY	1 cut(s)	655
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SacII	CCGCGG	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	2 cut(s)	11, 314
Sau3AI	GATC	2 cut(s)	388, 655
Sau96I	GGNCC	2 cut(s)	235, 601
SchI	GAGTC	1 cut(s)	818
ScrFI	CCNGG	2 cut(s)	159, 382
SduI	GDGCHC	1 cut(s)	408
SetI	ASST	9 cut(s)	89, 116, 128, 270, 315, 504, 619, 649, 678
SfaNI	GCATC	1 cut(s)	685
SfcI	CTRYAG	2 cut(s)	269, 738
Sfr303I	CCGCGG	1 cut(s)	14
SgrBI	CCGCGG	1 cut(s)	14
Sse9I	AATT	4 cut(s)	182, 415, 541, 745
SsiI	CCGC	4 cut(s)	8, 11, 13, 566
SspI	AATATT	1 cut(s)	35
SspMI	CTAG	3 cut(s)	132, 755, 853
StyD4I	CCNGG	2 cut(s)	157, 380
TaaI	ACNGT	1 cut(s)	739
TaiI	ACGT	1 cut(s)	116
TaqII	GACCGA	1 cut(s)	686
TasI	AATT	4 cut(s)	182, 415, 541, 745
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	2 cut(s)	96, 413
TseI	GCWGC	1 cut(s)	313
TspDTI	ATGAA	2 cut(s)	540, 704
TspRI	CASTG	2 cut(s)	96, 413
XapI	RAATTY	1 cut(s)	415
XbaI	TCTAGA	1 cut(s)	754
XspI	CTAG	3 cut(s)	132, 755, 853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.