Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006750

Physical Location & Seq

Genomic Coordinates Forward (+)

8101043 .. 8109441

Gene Structure 8399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00339670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2739 bp

ATGAGCACATCATCTAGTCGGCGGCATGAAAAGAAAGTGCATGACCACGATGAAGAAAGTGCCGCTAGGACAAGGCCTTTCGGCTATGAAGAGATTATGCTTAGAAGGAAGGATAAGAAGTTGTGTGATAATGTTGTGGCGGAAGCGGTTGATTTAGGGGATGTACCGGGGGAAGGTAATGCCGAAAATGTTTCAGAGGCTTTTGAATCCAAAAGGGGTGAGAGACGGCATAAAGATTTGGCCCCTGTTGTTGAAAAGCCTTTGTCGGAGGAGAGAGTGAAGGAAAGCTCCAGAAAGAAAGAAACATATAGTTCTAAGAGTACTAAAATAGAAGACGATGTTGTTAAAGGGAAAGTTAGAAGAAGCAATGAGTTGGAGAGCTTGAAGGATAAGCCAAAAAAAGATACAAGAAGTGAAGCTAGAGGAGACAAAACTGACAAACAAGTACATGGTAGGAGGAAAATTGACAAGGACCCAATTGATGAGTCTGTAAAGAAGCAGTCAAGAGATTATTCAACAAGAAAAGAAAGACATTTGGACCAAAATAGAGGGGAACATGAAAGAGAAACCAAGAGAAAATACCAACACGAAAATGATGACAAAATCAGAGACAGAAATGCTGCAAAGAAACATGATTCAGGAAAGCTTCGCGCTTTAGAAATTTCAGAGAGAAAGGAGAGGACAGAATCATCAAAATCACGCTTTGAAGAATCAAGACGCAAAAGGGGAAGATCAAGGGGTAGAGACCGCGTGGATAGACATAGGTTAAGTTCTCGGTCACCAAGGGCACGCAAACATACATTAAATAATTTGGGGCCTCGCAGCGATATATCATCATATTCTCCCAAAGATAGGTCTGGAAGACAGCATTTGGATATTGATAGTGGCAGAGTGTCTACTAATGGCTCAAGCAGCCACTATCAGCGACATGGTGAGTCTGCGAATAGACTTGGTGGCTATTCCCCTAGGAAGAGAAGGACCGAGTCTGCTATTAAGACTCCATCTCCACCCGATCATTCACCTGAAAGAAAAAATGCTAGGTGGGATCTTCCCCATGCATCAACCGACAAGGCATTATCTAGTTCGGTTGCTTCTCGTTTTCAGTCATCAAACAGTAATGTATCCTCAAATGTACATGGGATGACCATTGCTGTTGCTGTTGCCTCAACCACCACAACATCTATTCCTGGAGTTTCTCCCAATTCTATATTGACTAAGAAGAATGCTTCCGTTGACTCCGTGCAATTAACACAAGCTACCCGGCGTATGAGGAGGCTTCATGTAGAAAATTGCGTATGTTGTAAACATGAACTATTTTTGGTTGAACTACTATCTACTGCTGCTTTGCCAAATCTGAGGTATGTTGTGCTTACCATCCATGGAGCAGGTTTTCAGACAGTTGCTATTTTCATGCAGACTGGTGACCCCGAGGAATCAGTGGCTGCAGCTGAGAGTATTGAGACAATAAGTGATGTTGTGAACGATTCTCCTAACAAGATTTTCATTGGTGGGATATCAAAGACTCTTTCCTCAGAAATGCTTCTGGAAATCGTTAGTGTTTTTGGACCTTTGAAGGCATACCATTTTGAGGCCAATGAGGAACTTAATGAACCATGTGCTTTTCTAGAGTATGTCGACCAGTCAGTTACTCTCAAAGCTTGTGCGGGTCTGAATGGTATAAAATTAGGAGGGAGAATGCTAACTGTGGTTCAGGCAATTCGTAGTGGATCATCCATGGTAAATAGTGGAAATGCATCACTCTATGAGATCCCAGAACTTGCAAAGCCACTTCTCAAACAACCTTCACATATCCTGAAGCTTAAAAATGTGTTCAATCTGGAGCACATGTCATCACTGTCTGAACAAGAGATTGAAGAAGTTCTGGAAGATGTGCGATTAGAATGTGCCAGGTTTGGCATGGTTAAATCCGTAAAGATTGTCAAGCATGCAAACAATCACATTGTCACCACTAGAGCGTGTGAAGCTGTCAATGACGCAGAATCTGGTGGGCACTGGCAAAATTTATGTTCTGAAGAAAAAGCAGCAAAAACAGAGACTTTGGATGAACATATTGATAATGACCGGAAGGAAAAGAGTGGAGTGAAGCTTACAGGGGAACTTAAAGAAGATGAAGTCCCAGAAAGTAATTGCTTTGGTTATGATAAACCAGCAGGTGATTTTGTGGAGGACAAGTCATGTCAAATTGGCCAACCAGATAAAGATATTGAAATCCAAGGAAGCAATGACTTACCTAATAGGGATCCCGAAGAACTCACCAACCTGCCAAACAGCATGAAAGATGCGTCAGAGCGTGATGATGATAAAACTCCTGAAGTTACAACAGTAAAGAGTTCTATTATAGAGGAAGTTGATGGTAAGAAACAACAGACTTTTGCGGGAACAGAAACAGACTCTATTCTGGAGAGTGGAACTAAGGAGCAGCATAATGGGAAGGAGAATGATTTTGATCTTGGAAGCATATTCGAGCCTGGGTGTGTCTTTGTGGAGTTTGGGAGATCAGAAGCCTCTTGGATGGCAGCACATTGTTTACATGGACGAGTTTTTGAGGATCGGATTGTGACAGTGGAAGTAGGATCAGGTCCTTGCCTTCGACCCATCGTCTCCATTCTCTTGTCATTGGAGATAGACGTTGACCGGGGTTTGGCTTCTGGCCGGGTGGTGTTCTGCTGGCACTCTTCTAGTTTTAGAATTACTGTGGTGATGGTTCTTGTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0006913 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032239 GO:0032241 GO:0032386 GO:0032388 GO:0032879 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046822 GO:0046824 GO:0046831 GO:0046833 GO:0046907 GO:0048518 GO:0050789 GO:0051049 GO:0051050 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0065007 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

912

Amino Acids

101.91

Weight (kDa)

7.04

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	500 - 567	2.8e-06	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33435
fragaria_vesca	FvH4_4g04160 FvH4_4g04160 FvH4_4g04160
malus_domestica	MD13G1218500.v1.1
prunus_persica	Prupe.1G045200_v2.0.a1 Prupe.1G045200_v2.0.a1
pyrus_communis	pycom13g19340
rosa_chinensis	RchiOBHm_Chr4g0394621 RchiOBHm_Chr4g0394661
rosa_laevigata	RLG00000009679 RLG00000009684
rosa_multiflora	Rmu_sc0005424.1_g000012 Rmu_sc0006945.1_g000040
rosa_roxburghii	Rroxscaffold_5G00339670
rosa_rugosa	Rorug03G0363100.1 Rorug03G0363500.1 Rorug03G0363600.1 Rorug03G0363700.1
rosa_samantha	Rh4AG053300 Rh4AG054000 Rh4BG051200 Rh4BG051700 Rh4CG058500 Rh4DG050200
rosa_wichuraiana	Rw4G004300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2162
Acc36I	ACCTGC	3 cut(s)	1376, 2162, 2289
AccI	GTMKAC	2 cut(s)	896, 1635
AccII	CGCG	2 cut(s)	651, 750
AciI	CCGC	7 cut(s)	22, 63, 140, 146, 748, 1664, 2396
AclWI	GGATC	7 cut(s)	1053, 1735, 1762, 2255, 2268, 2577, 2602
AcoI	YGGCCR	2 cut(s)	2206, 2671
AcsI	RAATTY	2 cut(s)	660, 2020
AcuI	CTGAAG	3 cut(s)	1835, 2052, 2352
AfaI	GTAC	4 cut(s)	165, 322, 447, 1134
AfiI	CCNNNNNNNGG	4 cut(s)	173, 852, 1588, 2662
AflIII	ACRYGT	1 cut(s)	1845
AhdI	GACNNNNNGTC	1 cut(s)	2618
AjnI	CCWGG	3 cut(s)	1186, 1907, 2488
Alw21I	GWGCWC	2 cut(s)	8, 1845
Alw26I	GTCTC	7 cut(s)	217, 420, 603, 738, 1454, 2048, 2626
AlwI	GGATC	7 cut(s)	1053, 1735, 1762, 2255, 2268, 2577, 2602
AlwNI	CAGNNNCTG	2 cut(s)	1442, 2003
Ama87I	CYCGRG	1 cut(s)	1427
AoxI	GGCC	6 cut(s)	74, 240, 815, 1590, 2206, 2671
ApeKI	GCWGC	9 cut(s)	620, 822, 912, 1340, 1442, 1445, 2042, 2440, 2537
ApoI	RAATTY	2 cut(s)	660, 2020
Asp700I	GAANNNNTTC	2 cut(s)	1539, 1878
AspA2I	CCTAGG	1 cut(s)	965
AspLEI	GCGC	1 cut(s)	653
AspS9I	GGNCC	7 cut(s)	241, 472, 538, 815, 978, 1565, 2600
AsuC2I	CCSGG	4 cut(s)	168, 1261, 2657, 2675
AsuHPI	GGTGA	9 cut(s)	230, 771, 944, 1011, 1433, 1957, 2186, 2266, 2731
AvaI	CYCGRG	1 cut(s)	1427
AvaII	GGWCC	5 cut(s)	472, 538, 978, 1565, 2600
AvrII	CCTAGG	1 cut(s)	965
BaeGI	GKGCMC	2 cut(s)	790, 2013
BalI	TGGCCA	1 cut(s)	2208
BamHI	GGATCC	1 cut(s)	2260
BbsI	GAAGAC	2 cut(s)	339, 868
Bbv12I	GWGCWC	2 cut(s)	8, 1845
BbvI	GCAGC	9 cut(s)	607, 834, 924, 1327, 1429, 1457, 2054, 2452, 2549
BccI	CCATC	6 cut(s)	1009, 1382, 2366, 2527, 2624, 2716
BceAI	ACGGC	1 cut(s)	242
BciT130I	CCWGG	3 cut(s)	1188, 1909, 2490
BciVI	GTATCC	1 cut(s)	1132
BcnI	CCSGG	4 cut(s)	168, 1261, 2657, 2675
BcoDI	GTCTC	7 cut(s)	217, 420, 603, 738, 1454, 2048, 2626
BfaI	CTAG	9 cut(s)	15, 66, 420, 966, 1038, 1080, 1625, 1971, 2700
BfmI	CTRYAG	1 cut(s)	1443
BfuAI	ACCTGC	3 cut(s)	1376, 2162, 2289
BfuI	GTATCC	1 cut(s)	1132
BlnI	CCTAGG	1 cut(s)	965
BmcAI	AGTACT	1 cut(s)	322
Bme1390I	CCNGG	7 cut(s)	168, 1188, 1261, 1909, 2490, 2657, 2675
Bme18I	GGWCC	5 cut(s)	472, 538, 978, 1565, 2600
BmeRI	GACNNNNNGTC	1 cut(s)	2618
BmeT110I	CYCGRG	1 cut(s)	1427
BmgT120I	GGNCC	7 cut(s)	241, 472, 538, 815, 978, 1565, 2600
BmiI	GGNNCC	4 cut(s)	243, 474, 816, 2262
BmrFI	CCNGG	7 cut(s)	168, 1188, 1261, 1909, 2490, 2657, 2675
BmsI	GCATC	3 cut(s)	1067, 1763, 2290
BpiI	GAAGAC	2 cut(s)	339, 868
BpmI	CTGGAG	4 cut(s)	274, 1209, 1859, 2441
BpuEI	CTTGAG	1 cut(s)	892
BpuMI	CCSGG	4 cut(s)	168, 1261, 2657, 2675
BsaBI	GATNNNNATC	1 cut(s)	2466
BsaI	GGTCTC	1 cut(s)	738
BsaJI	CCNNGG	9 cut(s)	167, 782, 965, 1378, 1428, 1734, 2233, 2489, 2656
BsaWI	WCCGGW	1 cut(s)	2082
BsaXI	ACNNNNNCTCC	6 cut(s)	988, 1018, 1832, 1862, 2177, 2207
Bsc4I	CCNNNNNNNGG	4 cut(s)	173, 852, 1588, 2662
Bse1I	ACTGG	3 cut(s)	1423, 1639, 2018
Bse3DI	GCAATG	3 cut(s)	373, 1146, 2248
Bse8I	GATNNNNATC	1 cut(s)	2466
BseBI	CCWGG	3 cut(s)	1188, 1909, 2490
BseDI	CCNNGG	9 cut(s)	167, 782, 965, 1378, 1428, 1734, 2233, 2489, 2656
BseGI	GGATG	6 cut(s)	166, 1146, 1374, 1730, 2068, 2538
BseJI	GATNNNNATC	1 cut(s)	2466
BseLI	CCNNNNNNNGG	4 cut(s)	173, 852, 1588, 2662
BseMI	GCAATG	3 cut(s)	373, 1146, 2248
BseMII	CTCAG	3 cut(s)	1346, 1440, 1545
BseNI	ACTGG	3 cut(s)	1423, 1639, 2018
BseRI	GAGGAG	3 cut(s)	284, 438, 1285
BseSI	GKGCMC	2 cut(s)	790, 2013
BseXI	GCAGC	9 cut(s)	607, 834, 924, 1327, 1429, 1457, 2054, 2452, 2549
Bsh1236I	CGCG	2 cut(s)	651, 750
BshFI	GGCC	6 cut(s)	76, 242, 817, 1592, 2208, 2673
BsiHKAI	GWGCWC	2 cut(s)	8, 1845
BsiHKCI	CYCGRG	1 cut(s)	1427
BsiSI	CCGG	5 cut(s)	167, 1261, 2083, 2656, 2674
BslFI	GGGAC	1 cut(s)	2120
BslI	CCNNNNNNNGG	4 cut(s)	173, 852, 1588, 2662
BsmAI	GTCTC	7 cut(s)	217, 420, 603, 738, 1454, 2048, 2626
BsmBI	CGTCTC	2 cut(s)	217, 2626
BsmFI	GGGAC	1 cut(s)	2120
BsmI	GAATGC	2 cut(s)	1228, 1701
BsnI	GGCC	6 cut(s)	76, 242, 817, 1592, 2208, 2673
Bso31I	GGTCTC	1 cut(s)	738
BsoBI	CYCGRG	1 cut(s)	1427
Bsp1286I	GDGCHC	4 cut(s)	8, 790, 1845, 2013
Bsp1407I	TGTACA	1 cut(s)	1132
Bsp19I	CCATGG	2 cut(s)	1378, 1734
BspACI	CCGC	7 cut(s)	22, 63, 140, 146, 748, 1664, 2396
BspANI	GGCC	6 cut(s)	76, 242, 817, 1592, 2208, 2673
BspCNI	CTCAG	3 cut(s)	1347, 1441, 1544
BspFNI	CGCG	2 cut(s)	651, 750
BspLI	GGNNCC	4 cut(s)	243, 474, 816, 2262
BspMAI	CTGCAG	1 cut(s)	1447
BspMI	ACCTGC	3 cut(s)	1376, 2162, 2289
BspPI	GGATC	7 cut(s)	1053, 1735, 1762, 2255, 2268, 2577, 2602
BspTNI	GGTCTC	1 cut(s)	738
BsrDI	GCAATG	3 cut(s)	373, 1146, 2248
BsrGI	TGTACA	1 cut(s)	1132
BsrI	ACTGG	3 cut(s)	1423, 1639, 2018
BssECI	CCNNGG	9 cut(s)	167, 782, 965, 1378, 1428, 1734, 2233, 2489, 2656
BssT1I	CCWWGG	5 cut(s)	782, 965, 1378, 1734, 2233
Bst2UI	CCWGG	3 cut(s)	1188, 1909, 2490
Bst4CI	ACNGT	7 cut(s)	1115, 1399, 1705, 1857, 2344, 2584, 2716
Bst6I	CTCTTC	3 cut(s)	84, 965, 2701
BstAUI	TGTACA	1 cut(s)	1132
BstC8I	GCNNGC	3 cut(s)	790, 1947, 2690
BstDEI	CTNAG	7 cut(s)	101, 315, 1215, 1355, 1449, 1531, 2433
BstDSI	CCRYGG	2 cut(s)	1378, 1734
BstEII	GGTNACC	2 cut(s)	777, 1421
BstF5I	GGATG	6 cut(s)	166, 1146, 1374, 1730, 2068, 2538
BstFNI	CGCG	2 cut(s)	651, 750
BstHHI	GCGC	1 cut(s)	653
BstMAI	GTCTC	7 cut(s)	217, 420, 603, 738, 1454, 2048, 2626
BstMWI	GCNNNNNNNGC	2 cut(s)	912, 1982
BstNI	CCWGG	3 cut(s)	1188, 1909, 2490
BstNSI	RCATGY	2 cut(s)	1849, 1949
BstPI	GGTNACC	2 cut(s)	777, 1421
BstSCI	CCNGG	7 cut(s)	166, 1186, 1259, 1907, 2488, 2655, 2673
BstSFI	CTRYAG	1 cut(s)	1443
BstSLI	GKGCMC	2 cut(s)	790, 2013
BstUI	CGCG	2 cut(s)	651, 750
BstV1I	GCAGC	9 cut(s)	607, 834, 924, 1327, 1429, 1457, 2054, 2452, 2549
BstV2I	GAAGAC	2 cut(s)	339, 868
BstX2I	RGATCY	3 cut(s)	1045, 1767, 2260
BstYI	RGATCY	3 cut(s)	1045, 1767, 2260
BsuI	GTATCC	1 cut(s)	1132
BsuRI	GGCC	6 cut(s)	76, 242, 817, 1592, 2208, 2673
BtgI	CCRYGG	2 cut(s)	1378, 1734
BtsCI	GGATG	6 cut(s)	166, 1146, 1374, 1730, 2068, 2538
BtsIMutI	CAGTG	4 cut(s)	1443, 1853, 2011, 2589
BveI	ACCTGC	3 cut(s)	1376, 2162, 2289
Cac8I	GCNNGC	3 cut(s)	790, 1947, 2690
CaiI	CAGNNNCTG	2 cut(s)	1442, 2003
CfoI	GCGC	1 cut(s)	653
Cfr13I	GGNCC	7 cut(s)	241, 472, 538, 815, 978, 1565, 2600
CseI	GACGC	3 cut(s)	726, 2003, 2292
Csp6I	GTAC	4 cut(s)	164, 321, 446, 1133
CviQI	GTAC	4 cut(s)	164, 321, 446, 1133
DdeI	CTNAG	7 cut(s)	101, 315, 1215, 1355, 1449, 1531, 2433
DriI	GACNNNNNGTC	1 cut(s)	2618
EaeI	YGGCCR	2 cut(s)	2206, 2671
Eam1104I	CTCTTC	3 cut(s)	84, 965, 2701
Eam1105I	GACNNNNNGTC	1 cut(s)	2618
EarI	CTCTTC	3 cut(s)	84, 965, 2701
EciI	GGCGGA	1 cut(s)	155
Eco130I	CCWWGG	5 cut(s)	782, 965, 1378, 1734, 2233
Eco147I	AGGCCT	1 cut(s)	76
Eco31I	GGTCTC	1 cut(s)	738
Eco32I	GATATC	1 cut(s)	1515
Eco47I	GGWCC	5 cut(s)	472, 538, 978, 1565, 2600
Eco57I	CTGAAG	3 cut(s)	1835, 2052, 2352
Eco88I	CYCGRG	1 cut(s)	1427
Eco91I	GGTNACC	2 cut(s)	777, 1421
EcoO109I	RGGNCCY	3 cut(s)	472, 815, 2600
EcoO65I	GGTNACC	2 cut(s)	777, 1421
EcoRII	CCWGG	3 cut(s)	1186, 1907, 2488
EcoRV	GATATC	1 cut(s)	1515
EcoT14I	CCWWGG	5 cut(s)	782, 965, 1378, 1734, 2233
EcoT22I	ATGCAT	2 cut(s)	1060, 1756
ErhI	CCWWGG	5 cut(s)	782, 965, 1378, 1734, 2233
Esp3I	CGTCTC	2 cut(s)	217, 2626
FaqI	GGGAC	1 cut(s)	2120
FauI	CCCGC	2 cut(s)	1657, 2389
FblI	GTMKAC	2 cut(s)	896, 1635
FokI	GGATG	6 cut(s)	173, 1153, 1361, 1717, 2075, 2545
FspBI	CTAG	9 cut(s)	15, 66, 420, 966, 1038, 1080, 1625, 1971, 2700
GlaI	GCGC	1 cut(s)	652
GsuI	CTGGAG	4 cut(s)	274, 1209, 1859, 2441
HaeIII	GGCC	6 cut(s)	76, 242, 817, 1592, 2208, 2673
HapII	CCGG	5 cut(s)	167, 1261, 2083, 2656, 2674
HgaI	GACGC	3 cut(s)	726, 2003, 2292
HhaI	GCGC	1 cut(s)	653
Hin6I	GCGC	1 cut(s)	651
HinP1I	GCGC	1 cut(s)	651
HincII	GTYRAC	3 cut(s)	1234, 1636, 2653
HindII	GTYRAC	3 cut(s)	1234, 1636, 2653
HindIII	AAGCTT	4 cut(s)	644, 1656, 1817, 2105
HpaII	CCGG	5 cut(s)	167, 1261, 2083, 2656, 2674
HphI	GGTGA	9 cut(s)	230, 771, 944, 1011, 1433, 1957, 2186, 2266, 2731
Hpy166II	GTNNAC	7 cut(s)	897, 1234, 1304, 1480, 1636, 2549, 2653
Hpy8I	GTNNAC	7 cut(s)	897, 1234, 1304, 1480, 1636, 2549, 2653
HpyCH4III	ACNGT	7 cut(s)	1115, 1399, 1705, 1857, 2344, 2584, 2716
HpyCH4IV	ACGT	1 cut(s)	2649
HpyCH4V	TGCA	9 cut(s)	40, 623, 1058, 1243, 1414, 1445, 1754, 1781, 1949
HpyF10VI	GCNNNNNNNGC	2 cut(s)	912, 1982
HpyF3I	CTNAG	7 cut(s)	101, 315, 1215, 1355, 1449, 1531, 2433
HpySE526I	ACGT	1 cut(s)	2649
HspAI	GCGC	1 cut(s)	651
LmnI	GCTCC	4 cut(s)	293, 1382, 1840, 2437
Lsp1109I	GCAGC	9 cut(s)	607, 834, 924, 1327, 1429, 1457, 2054, 2452, 2549
LweI	GCATC	3 cut(s)	1067, 1763, 2290
MaeI	CTAG	9 cut(s)	15, 66, 420, 966, 1038, 1080, 1625, 1971, 2700
MaeII	ACGT	1 cut(s)	2649
MaeIII	GTNAC	6 cut(s)	777, 1421, 1645, 1963, 2335, 2578
MfeI	CAATTG	1 cut(s)	477
MflI	RGATCY	3 cut(s)	1045, 1767, 2260
MhlI	GDGCHC	4 cut(s)	8, 790, 1845, 2013
MlsI	TGGCCA	1 cut(s)	2208
MluNI	TGGCCA	1 cut(s)	2208
MlyI	GAGTC	7 cut(s)	494, 944, 991, 992, 1229, 1516, 2405
MmeI	TCCRAC	2 cut(s)	246, 354
Mox20I	TGGCCA	1 cut(s)	2208
Mph1103I	ATGCAT	2 cut(s)	1060, 1756
MroXI	GAANNNNTTC	2 cut(s)	1539, 1878
MscI	TGGCCA	1 cut(s)	2208
MseI	TTAA	9 cut(s)	345, 767, 803, 993, 1247, 1605, 1821, 1923, 2121
MslI	CAYNNNNRTG	1 cut(s)	591
Msp20I	TGGCCA	1 cut(s)	2208
MspA1I	CMGCKG	1 cut(s)	1448
MspI	CCGG	5 cut(s)	167, 1261, 2083, 2656, 2674
MspR9I	CCNGG	7 cut(s)	168, 1188, 1261, 1909, 2490, 2657, 2675
MunI	CAATTG	1 cut(s)	477
Mva1269I	GAATGC	2 cut(s)	1228, 1701
MvaI	CCWGG	3 cut(s)	1188, 1909, 2490
MvnI	CGCG	2 cut(s)	651, 750
MwoI	GCNNNNNNNGC	2 cut(s)	912, 1982
NciI	CCSGG	4 cut(s)	168, 1261, 2657, 2675
NcoI	CCATGG	2 cut(s)	1378, 1734
NlaIV	GGNNCC	4 cut(s)	243, 474, 816, 2262
NmuCI	GTSAC	4 cut(s)	777, 1421, 1963, 2578
NsiI	ATGCAT	2 cut(s)	1060, 1756
NspI	RCATGY	2 cut(s)	1849, 1949
PaeI	GCATGC	1 cut(s)	1949
PaqCI	CACCTGC	1 cut(s)	2162
PceI	AGGCCT	1 cut(s)	76
PciI	ACATGT	1 cut(s)	1845
PctI	GAATGC	2 cut(s)	1228, 1701
PdmI	GAANNNNTTC	2 cut(s)	1539, 1878
PfeI	GAWTC	7 cut(s)	206, 635, 686, 710, 1433, 1484, 2000
PflFI	GACNNNGTC	1 cut(s)	982
PfoI	TCCNGGA	1 cut(s)	1186
PleI	GAGTC	7 cut(s)	493, 943, 991, 991, 1229, 1516, 2405
PpsI	GAGTC	7 cut(s)	493, 943, 991, 991, 1229, 1516, 2405
PpuMI	RGGWCCY	2 cut(s)	472, 2600
PscI	ACATGT	1 cut(s)	1845
Psp5II	RGGWCCY	2 cut(s)	472, 2600
Psp6I	CCWGG	3 cut(s)	1186, 1907, 2488
PspEI	GGTNACC	2 cut(s)	777, 1421
PspGI	CCWGG	3 cut(s)	1186, 1907, 2488
PspN4I	GGNNCC	4 cut(s)	243, 474, 816, 2262
PspPI	GGNCC	7 cut(s)	241, 472, 538, 815, 978, 1565, 2600
PspPPI	RGGWCCY	2 cut(s)	472, 2600
PstI	CTGCAG	1 cut(s)	1447
PstNI	CAGNNNCTG	2 cut(s)	1442, 2003
PsuI	RGATCY	3 cut(s)	1045, 1767, 2260
PsyI	GACNNNGTC	1 cut(s)	982
PvuII	CAGCTG	1 cut(s)	1448
RsaI	GTAC	4 cut(s)	165, 322, 447, 1134
RsaNI	GTAC	4 cut(s)	164, 321, 446, 1133
RseI	CAYNNNNRTG	1 cut(s)	591
SalI	GTCGAC	1 cut(s)	1634
SaqAI	TTAA	9 cut(s)	345, 767, 803, 993, 1247, 1605, 1821, 1923, 2121
Sau96I	GGNCC	7 cut(s)	241, 472, 538, 815, 978, 1565, 2600
ScaI	AGTACT	1 cut(s)	322
SchI	GAGTC	7 cut(s)	494, 944, 991, 992, 1229, 1516, 2405
ScrFI	CCNGG	7 cut(s)	168, 1188, 1261, 1909, 2490, 2657, 2675
SduI	GDGCHC	4 cut(s)	8, 790, 1845, 2013
SfaNI	GCATC	3 cut(s)	1067, 1763, 2290
SfcI	CTRYAG	1 cut(s)	1443
SinI	GGWCC	5 cut(s)	472, 538, 978, 1565, 2600
SmiMI	CAYNNNNRTG	1 cut(s)	591
SmlI	CTYRAG	1 cut(s)	907
SmoI	CTYRAG	1 cut(s)	907
SphI	GCATGC	1 cut(s)	1949
SseBI	AGGCCT	1 cut(s)	76
SsiI	CCGC	7 cut(s)	22, 63, 140, 146, 748, 1664, 2396
SspMI	CTAG	9 cut(s)	15, 66, 420, 966, 1038, 1080, 1625, 1971, 2700
StuI	AGGCCT	1 cut(s)	76
StyD4I	CCNGG	7 cut(s)	166, 1186, 1259, 1907, 2488, 2655, 2673
StyI	CCWWGG	5 cut(s)	782, 965, 1378, 1734, 2233
TaaI	ACNGT	7 cut(s)	1115, 1399, 1705, 1857, 2344, 2584, 2716
TaiI	ACGT	1 cut(s)	2652
TaqI	TCGA	3 cut(s)	1635, 2484, 2611
TaqII	GACCGA	2 cut(s)	765, 995
TatI	WGTACW	3 cut(s)	320, 445, 1132
TauI	GCSGC	2 cut(s)	25, 65
TfiI	GAWTC	7 cut(s)	206, 635, 686, 710, 1433, 1484, 2000
Tru1I	TTAA	9 cut(s)	345, 767, 803, 993, 1247, 1605, 1821, 1923, 2121
Tru9I	TTAA	9 cut(s)	345, 767, 803, 993, 1247, 1605, 1821, 1923, 2121
TscAI	CASTG	4 cut(s)	1443, 1860, 2018, 2589
TseFI	GTSAC	4 cut(s)	777, 1421, 1963, 2578
TseI	GCWGC	9 cut(s)	620, 822, 912, 1340, 1442, 1445, 2042, 2440, 2537
Tsp45I	GTSAC	4 cut(s)	777, 1421, 1963, 2578
TspGWI	ACGGA	3 cut(s)	1219, 1228, 1918
TspRI	CASTG	4 cut(s)	1443, 1860, 2018, 2589
Tth111I	GACNNNGTC	1 cut(s)	982
VpaK11BI	GGWCC	5 cut(s)	472, 538, 978, 1565, 2600
XapI	RAATTY	2 cut(s)	660, 2020
XbaI	TCTAGA	1 cut(s)	1624
XceI	RCATGY	2 cut(s)	1849, 1949
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1915
XmaJI	CCTAGG	1 cut(s)	965
XmiI	GTMKAC	2 cut(s)	896, 1635
XmnI	GAANNNNTTC	2 cut(s)	1539, 1878
XspI	CTAG	9 cut(s)	15, 66, 420, 966, 1038, 1080, 1625, 1971, 2700
ZrmI	AGTACT	1 cut(s)	322
Zsp2I	ATGCAT	2 cut(s)	1060, 1756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.