Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0006750

Physical Location & Seq

Genomic Coordinates Forward (+)

8575966 .. 8583873

Gene Structure 7908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G004300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2679 bp

ATGAGCACATCATCCAGTCGGCGGCATGAAAAGAAAGTGCTGGCCACGATGAAGAAAGTGCCGCTAGGACAAGGCCTTTCGGCTATGAAGAGATTATGCTTAGGAGGAAGGATAAGAATTGTTACCGAAAATGTTTCAGAGGCTTTTGAATCCAAAAGGGGTGAGAGACGGCATAGAGATTTGGCCCCTGTTGTTGAAAAGCCTTTGTCGGAGGAGAGAGTGAAGGAAAGCTCCAGAAAGAAAGAAACTTATAGTTCTAAGAGTACTAAAACGGAAGATGATGTTGTTAAAGGGAAAGTTAGAAGAAGCAATGAGTCGGAGAGCTTGAAGGATAAGCCAAAAAAAGATACAAGAAGTGAAGCTAGAGGAGACAAAACTGACAAACAAGTACATGGTAGGAGGAAAATTGACAAGGACTCGATTGATGAGTCAAAAGAAAGACATTTGGACCAAAGTAGAGGAGAACATGAAAGAGAAACCAAGAGAAAATACCAACACGAAAATGATGACAAAATCAGAGACAGAAGTGCTGCAAAGAAACATGATTCAGGAAAGCTTCGCGCTTTAGAAATTTCAGAGAGAAAGGAGAGGACAGAATCATCAAAATCACGCTTTGAAGAATCAAGACGCAAAAGGGGAAGATCAAGGAGTAGAGACCGCGTGGATAGACATAGGTTAAGTTCTCGGTCACCAAGGGCACACAAACATACATTAAATAATTTGGGGCCTCGCAGCGTTATATCATCTTATTCTCCCAAAGATAGGTCTGGAAGACAGCATTTGGATATTGATAGTAGCAGAGTGTCTACTAATGGCTCAAGCAGCCACTATCAGCGACATGGTGAGTCTGCGAATAGACTTGGTGGCTATTCCCCTAGGAAGAGAAGGACTGAATCTGCTATTAAGACTCCATCCCCACCCGATCGTTCACCTGAAAAGAAAAATGCCAGGTGGGATCTCCCCCATGCATCAACTGACAAGGCATTATCTAGTTTGGTTGCTTCTCGTTTTCAGTCATCAAACAGTAATGTGTCCTCAAATGTACATGGGATGACCATTGCTGTTGCTGTTGCCTCAACCGCCACAACATCTATTCCTGGAGTTTCTCCCAATTCTATATTGACTAAGAAGAATGCTTCCGTTGACTCCGTGCAATTAACACAAGCTACCCGGCGTATGAGGAGGCTTCATGTAGAAAATATTCCCTCTACAACCTCTGAAAACACTTTGGTAGAATCTCTTAATAAATTTTTGTTGTCTTCGGGCGTGAATCATATTCAAGGAACACAACCCTGCATCAGTTGTGTGATTAACAAAGAGAAGGGGCAAGCTCTTGTGGAGTTTCTTACACCTCAAGATGCTTTGGCTGCTCTGTCATTTGATGGCAGTTCATTCTTTGGTTCTATTCTCAAAATCAGGCGCCCTAAGGACTTTGTTGACGTTGCTACTGGTGACCCCGAGAAATCAGTGGCTGCAGCTGAGAGTATTGAGACAGTAAGTGATGTTGTGAACGATTCTCCTAACAAGATTTTCATTGGTGGGATATCGAAGGCTCTTTCCTCAGAAATGCTTCTGGAAATCATTAGTGTCTTTGGACCTTTGAAGGCATACCATTTTGAGGCCAATGAGGAACTTAATGGACCATGTGCTTTTCTAGAGTATGTCGACCAGTCAGTTACTCTCAAAGCTTGTGCGGGTCTGAATGGTATAAAATTAGGAGGGAGAGTGCTAACTGTGGTTCAGGCAATTCGTAGTGGATCATCCATGGTAAATAGTGGAAATGCATCACTCTATGAGATCCCAGAACATGCAAAGCCACTTCTCAAACAACCTTCACATATCCTGAAGCTTAGAAATGTGTTCAATCTGGAGCACATGTCATCACTGTCTGAACAAGAGATTGAAGAAGTTCTGGAAGATGTGCGATTAGAATGTGCCAGGTTTGGCATGGTTAAATCTGTAAAGATTGTCAAGCATGCAAACAATCACATTGTCACCACTAGAGCGTGTGAAGCTGTCAATGATGCAGAATCTGGTGGGCACTGGCAAAATTTATGTTCTGAAGAAAAAGCAGCAAAAACAGAGACTTTGGACGAACATATTGATAATGACGGCAAGGAAACGAGTGGAGTGAAGCTTACAGGGGAACTTAAAGAAGATGAAGTCCCAGAAAGTAATTGCTTTGGTTATGATAAACCAGCAGGTGATTTTGTAGAGGACAAGTCATGTCAAATGGGCCAACCAGATAAAGATATTGAAATCCAAGGAAGCAATGACTTACCTAATAGCGAACCCGAAGAACTCACCAACCTGCCAAACAGCATGAAAGATGCGTCAGAGTGTTATGATGATAAAACTCCTGAAGTTACAACAGTAGAGAGTTCTATTATAGAGGAAGTTGATGGTAAGAAACAACAGACTTTTGCTGGAACAGATGACAATGTGGGAACAGAAACAGACTCTATTCTGGAGAGTGGAACTAAGGATCAGCATAATGGGAAGGATAATGATTTTGATCTTGGAAGCATATTCGAGCCTGGGTGTGTCTTTGTGGAGTTTGGGAGATCAGAAGCCTCTTGGATGGCAGCACATTGTTTACATGGACGAGTTTTTGAGGATCGGATTGTGACAGTGGAGTATATCGCACCTGATCATTACAGGGCTAAATTTTTAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0006913 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032239 GO:0032241 GO:0032386 GO:0032388 GO:0032879 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046822 GO:0046824 GO:0046831 GO:0046833 GO:0046907 GO:0048518 GO:0050789 GO:0051049 GO:0051050 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0065007 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

892

Amino Acids

99.05

Weight (kDa)

7.87

Isoelectric Point (pI)

58.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	510 - 577	1.3e-06	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33435
fragaria_vesca	FvH4_4g04160 FvH4_4g04160 FvH4_4g04160
malus_domestica	MD13G1218500.v1.1
prunus_persica	Prupe.1G045200_v2.0.a1 Prupe.1G045200_v2.0.a1
pyrus_communis	pycom13g19340
rosa_chinensis	RchiOBHm_Chr4g0394621 RchiOBHm_Chr4g0394661
rosa_laevigata	RLG00000009679 RLG00000009684
rosa_multiflora	Rmu_sc0005424.1_g000012 Rmu_sc0006945.1_g000040
rosa_roxburghii	Rroxscaffold_5G00339670
rosa_rugosa	Rorug03G0363100.1 Rorug03G0363500.1 Rorug03G0363600.1 Rorug03G0363700.1
rosa_samantha	Rh4AG053300 Rh4AG054000 Rh4BG051200 Rh4BG051700 Rh4CG058500 Rh4DG050200
rosa_wichuraiana	Rw4G004300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2192
Acc36I	ACCTGC	2 cut(s)	2192, 2319
AccB1I	GGYRCC	1 cut(s)	1419
AccI	GTMKAC	2 cut(s)	806, 1665
AccII	CGCG	2 cut(s)	561, 660
AciI	CCGC	5 cut(s)	22, 62, 658, 1080, 1694
AclWI	GGATC	5 cut(s)	963, 1765, 1792, 2493, 2625
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	4 cut(s)	570, 1247, 2050, 2666
AcuI	CTGAAG	3 cut(s)	1865, 2082, 2382
AcyI	GRCGYC	1 cut(s)	1420
AfaI	GTAC	3 cut(s)	265, 390, 1044
AfiI	CCNNNNNNNGG	3 cut(s)	21, 762, 1618
AflIII	ACRYGT	1 cut(s)	1875
AgsI	TTSAA	9 cut(s)	149, 197, 328, 617, 1280, 1603, 1864, 1904, 2258
AjnI	CCWGG	4 cut(s)	947, 1096, 1937, 2536
Alw21I	GWGCWC	2 cut(s)	8, 1875
Alw26I	GTCTC	6 cut(s)	160, 363, 513, 648, 1484, 2078
AlwI	GGATC	5 cut(s)	963, 1765, 1792, 2493, 2625
AlwNI	CAGNNNCTG	2 cut(s)	1472, 2033
Ama87I	CYCGRG	1 cut(s)	1457
AoxI	GGCC	6 cut(s)	42, 73, 183, 725, 1620, 2236
ApeKI	GCWGC	8 cut(s)	530, 732, 822, 1367, 1472, 1475, 2072, 2585
ApoI	RAATTY	4 cut(s)	570, 1247, 2050, 2666
Asp700I	GAANNNNTTC	3 cut(s)	1200, 1569, 1908
AspA2I	CCTAGG	1 cut(s)	875
AspLEI	GCGC	2 cut(s)	563, 1422
AspS9I	GGNCC	6 cut(s)	184, 448, 725, 1595, 1640, 2236
AsuC2I	CCSGG	1 cut(s)	1171
AsuHPI	GGTGA	8 cut(s)	173, 681, 854, 921, 1463, 1987, 2216, 2296
AvaI	CYCGRG	1 cut(s)	1457
AvaII	GGWCC	3 cut(s)	448, 1595, 1640
AvrII	CCTAGG	1 cut(s)	875
AxyI	CCTNAGG	1 cut(s)	1425
BaeGI	GKGCMC	2 cut(s)	700, 2043
BalI	TGGCCA	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	1419
BbsI	GAAGAC	2 cut(s)	778, 1251
Bbv12I	GWGCWC	2 cut(s)	8, 1875
BbvI	GCAGC	8 cut(s)	517, 744, 834, 1354, 1459, 1487, 2084, 2597
BccI	CCATC	4 cut(s)	919, 1376, 2396, 2575
BceAI	ACGGC	2 cut(s)	185, 2128
BciT130I	CCWGG	4 cut(s)	949, 1098, 1939, 2538
BclI	TGATCA	1 cut(s)	2650
BcnI	CCSGG	1 cut(s)	1171
BcoDI	GTCTC	6 cut(s)	160, 363, 513, 648, 1484, 2078
BfaI	CTAG	6 cut(s)	65, 363, 876, 990, 1655, 2001
BfmI	CTRYAG	1 cut(s)	1473
BfoI	RGCGCY	1 cut(s)	1423
BfuAI	ACCTGC	2 cut(s)	2192, 2319
BlnI	CCTAGG	1 cut(s)	875
BmcAI	AGTACT	1 cut(s)	265
Bme1390I	CCNGG	5 cut(s)	949, 1098, 1171, 1939, 2538
Bme18I	GGWCC	3 cut(s)	448, 1595, 1640
BmeT110I	CYCGRG	1 cut(s)	1457
BmgT120I	GGNCC	6 cut(s)	184, 448, 725, 1595, 1640, 2236
BmiI	GGNNCC	3 cut(s)	186, 726, 1421
BmrFI	CCNGG	5 cut(s)	949, 1098, 1171, 1939, 2538
BmsI	GCATC	6 cut(s)	977, 1305, 1348, 1793, 2014, 2320
BpiI	GAAGAC	2 cut(s)	778, 1251
BpmI	CTGGAG	4 cut(s)	217, 1119, 1889, 2489
Bpu10I	CCTNAGC	1 cut(s)	100
BpuEI	CTTGAG	2 cut(s)	802, 1338
BpuMI	CCSGG	1 cut(s)	1171
BsaBI	GATNNNNATC	1 cut(s)	2514
BsaHI	GRCGYC	1 cut(s)	1420
BsaI	GGTCTC	1 cut(s)	648
BsaJI	CCNNGG	5 cut(s)	692, 875, 1764, 2263, 2537
BsaXI	ACNNNNNCTCC	4 cut(s)	1710, 1740, 1862, 1892
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 762, 1618
Bse1I	ACTGG	4 cut(s)	15, 1453, 1669, 2048
Bse21I	CCTNAGG	1 cut(s)	1425
Bse3DI	GCAATG	3 cut(s)	316, 1056, 2278
Bse8I	GATNNNNATC	1 cut(s)	2514
BseBI	CCWGG	4 cut(s)	949, 1098, 1939, 2538
BseDI	CCNNGG	5 cut(s)	692, 875, 1764, 2263, 2537
BseGI	GGATG	5 cut(s)	11, 911, 1056, 1760, 2586
BseJI	GATNNNNATC	1 cut(s)	2514
BseLI	CCNNNNNNNGG	3 cut(s)	21, 762, 1618
BseMI	GCAATG	3 cut(s)	316, 1056, 2278
BseMII	CTCAG	2 cut(s)	1470, 1575
BseNI	ACTGG	4 cut(s)	15, 1453, 1669, 2048
BseRI	GAGGAG	4 cut(s)	227, 381, 474, 1195
BseSI	GKGCMC	2 cut(s)	700, 2043
BseXI	GCAGC	8 cut(s)	517, 744, 834, 1354, 1459, 1487, 2084, 2597
Bsh1236I	CGCG	2 cut(s)	561, 660
Bsh1285I	CGRYCG	1 cut(s)	925
BshFI	GGCC	6 cut(s)	44, 75, 185, 727, 1622, 2238
BshNI	GGYRCC	1 cut(s)	1419
BsiEI	CGRYCG	1 cut(s)	925
BsiHKAI	GWGCWC	2 cut(s)	8, 1875
BsiHKCI	CYCGRG	1 cut(s)	1457
BsiSI	CCGG	1 cut(s)	1171
BslFI	GGGAC	1 cut(s)	2150
BslI	CCNNNNNNNGG	3 cut(s)	21, 762, 1618
BsmAI	GTCTC	6 cut(s)	160, 363, 513, 648, 1484, 2078
BsmBI	CGTCTC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	2150
BsmI	GAATGC	1 cut(s)	1138
BsnI	GGCC	6 cut(s)	44, 75, 185, 727, 1622, 2238
Bso31I	GGTCTC	1 cut(s)	648
BsoBI	CYCGRG	1 cut(s)	1457
Bsp1286I	GDGCHC	4 cut(s)	8, 700, 1875, 2043
Bsp1407I	TGTACA	1 cut(s)	1042
Bsp19I	CCATGG	1 cut(s)	1764
BspACI	CCGC	5 cut(s)	22, 62, 658, 1080, 1694
BspANI	GGCC	6 cut(s)	44, 75, 185, 727, 1622, 2238
BspCNI	CTCAG	2 cut(s)	1471, 1574
BspFNI	CGCG	2 cut(s)	561, 660
BspLI	GGNNCC	3 cut(s)	186, 726, 1421
BspMAI	CTGCAG	1 cut(s)	1477
BspMI	ACCTGC	2 cut(s)	2192, 2319
BspPI	GGATC	5 cut(s)	963, 1765, 1792, 2493, 2625
BspT107I	GGYRCC	1 cut(s)	1419
BspTNI	GGTCTC	1 cut(s)	648
BsrDI	GCAATG	3 cut(s)	316, 1056, 2278
BsrGI	TGTACA	1 cut(s)	1042
BsrI	ACTGG	4 cut(s)	15, 1453, 1669, 2048
BssECI	CCNNGG	5 cut(s)	692, 875, 1764, 2263, 2537
BssNI	GRCGYC	1 cut(s)	1420
BssT1I	CCWWGG	4 cut(s)	692, 875, 1764, 2263
Bst2UI	CCWGG	4 cut(s)	949, 1098, 1939, 2538
Bst4CI	ACNGT	6 cut(s)	1025, 1495, 1735, 1887, 2374, 2632
Bst6I	CTCTTC	2 cut(s)	83, 875
BstACI	GRCGYC	1 cut(s)	1420
BstAUI	TGTACA	1 cut(s)	1042
BstC8I	GCNNGC	3 cut(s)	42, 1329, 1977
BstDEI	CTNAG	8 cut(s)	100, 258, 1125, 1425, 1479, 1561, 1850, 2481
BstDSI	CCRYGG	1 cut(s)	1764
BstEII	GGTNACC	2 cut(s)	687, 1451
BstF5I	GGATG	5 cut(s)	11, 911, 1056, 1760, 2586
BstFNI	CGCG	2 cut(s)	561, 660
BstH2I	RGCGCY	1 cut(s)	1423
BstHHI	GCGC	2 cut(s)	563, 1422
BstMAI	GTCTC	6 cut(s)	160, 363, 513, 648, 1484, 2078
BstMCI	CGRYCG	1 cut(s)	925
BstMWI	GCNNNNNNNGC	4 cut(s)	822, 1079, 1367, 2012
BstNI	CCWGG	4 cut(s)	949, 1098, 1939, 2538
BstNSI	RCATGY	3 cut(s)	1811, 1879, 1979
BstPI	GGTNACC	2 cut(s)	687, 1451
BstSCI	CCNGG	5 cut(s)	947, 1096, 1169, 1937, 2536
BstSFI	CTRYAG	1 cut(s)	1473
BstSLI	GKGCMC	2 cut(s)	700, 2043
BstUI	CGCG	2 cut(s)	561, 660
BstV1I	GCAGC	8 cut(s)	517, 744, 834, 1354, 1459, 1487, 2084, 2597
BstV2I	GAAGAC	2 cut(s)	778, 1251
BstX2I	RGATCY	2 cut(s)	955, 1797
BstYI	RGATCY	2 cut(s)	955, 1797
Bsu36I	CCTNAGG	1 cut(s)	1425
BsuRI	GGCC	6 cut(s)	44, 75, 185, 727, 1622, 2238
BtgI	CCRYGG	1 cut(s)	1764
BtsCI	GGATG	5 cut(s)	11, 911, 1056, 1760, 2586
BtsIMutI	CAGTG	4 cut(s)	1473, 1883, 2041, 2637
BveI	ACCTGC	2 cut(s)	2192, 2319
Cac8I	GCNNGC	3 cut(s)	42, 1329, 1977
CaiI	CAGNNNCTG	2 cut(s)	1472, 2033
CfoI	GCGC	2 cut(s)	563, 1422
Cfr13I	GGNCC	6 cut(s)	184, 448, 725, 1595, 1640, 2236
CseI	GACGC	2 cut(s)	636, 2322
Csp6I	GTAC	3 cut(s)	264, 389, 1043
CviQI	GTAC	3 cut(s)	264, 389, 1043
DdeI	CTNAG	8 cut(s)	100, 258, 1125, 1425, 1479, 1561, 1850, 2481
DinI	GGCGCC	1 cut(s)	1421
DraI	TTTAAA	1 cut(s)	2673
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	2 cut(s)	83, 875
EarI	CTCTTC	2 cut(s)	83, 875
Eco130I	CCWWGG	4 cut(s)	692, 875, 1764, 2263
Eco147I	AGGCCT	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	648
Eco32I	GATATC	1 cut(s)	1545
Eco47I	GGWCC	3 cut(s)	448, 1595, 1640
Eco57I	CTGAAG	3 cut(s)	1865, 2082, 2382
Eco81I	CCTNAGG	1 cut(s)	1425
Eco88I	CYCGRG	1 cut(s)	1457
Eco91I	GGTNACC	2 cut(s)	687, 1451
EcoO109I	RGGNCCY	1 cut(s)	725
EcoO65I	GGTNACC	2 cut(s)	687, 1451
EcoRII	CCWGG	4 cut(s)	947, 1096, 1937, 2536
EcoRV	GATATC	1 cut(s)	1545
EcoT14I	CCWWGG	4 cut(s)	692, 875, 1764, 2263
EcoT22I	ATGCAT	2 cut(s)	970, 1786
EgeI	GGCGCC	1 cut(s)	1421
EheI	GGCGCC	1 cut(s)	1421
ErhI	CCWWGG	4 cut(s)	692, 875, 1764, 2263
Esp3I	CGTCTC	1 cut(s)	160
FaqI	GGGAC	1 cut(s)	2150
FauI	CCCGC	1 cut(s)	1687
FbaI	TGATCA	1 cut(s)	2650
FblI	GTMKAC	2 cut(s)	806, 1665
FokI	GGATG	4 cut(s)	898, 1063, 1747, 2593
FspBI	CTAG	6 cut(s)	65, 363, 876, 990, 1655, 2001
GlaI	GCGC	2 cut(s)	562, 1421
GsuI	CTGGAG	4 cut(s)	217, 1119, 1889, 2489
HaeII	RGCGCY	1 cut(s)	1423
HaeIII	GGCC	6 cut(s)	44, 75, 185, 727, 1622, 2238
HapII	CCGG	1 cut(s)	1171
HgaI	GACGC	2 cut(s)	636, 2322
HhaI	GCGC	2 cut(s)	563, 1422
Hin1I	GRCGYC	1 cut(s)	1420
Hin6I	GCGC	2 cut(s)	561, 1420
HinP1I	GCGC	2 cut(s)	561, 1420
HincII	GTYRAC	3 cut(s)	1144, 1438, 1666
HindII	GTYRAC	3 cut(s)	1144, 1438, 1666
HindIII	AAGCTT	4 cut(s)	554, 1686, 1847, 2135
HpaII	CCGG	1 cut(s)	1171
HphI	GGTGA	8 cut(s)	173, 681, 854, 921, 1463, 1987, 2216, 2296
Hpy166II	GTNNAC	7 cut(s)	807, 929, 1144, 1438, 1510, 1666, 2597
Hpy8I	GTNNAC	7 cut(s)	807, 929, 1144, 1438, 1510, 1666, 2597
HpyAV	CCTTC	9 cut(s)	102, 217, 322, 879, 1315, 1543, 1597, 1842, 2494
HpyCH4III	ACNGT	6 cut(s)	1025, 1495, 1735, 1887, 2374, 2632
HpyCH4IV	ACGT	1 cut(s)	1440
HpyCH4V	TGCA	9 cut(s)	533, 968, 1153, 1296, 1475, 1784, 1811, 1979, 2027
HpyF10VI	GCNNNNNNNGC	4 cut(s)	822, 1079, 1367, 2012
HpyF3I	CTNAG	8 cut(s)	100, 258, 1125, 1425, 1479, 1561, 1850, 2481
HpySE526I	ACGT	1 cut(s)	1440
Hsp92I	GRCGYC	1 cut(s)	1420
HspAI	GCGC	2 cut(s)	561, 1420
KasI	GGCGCC	1 cut(s)	1419
Ksp22I	TGATCA	1 cut(s)	2650
LmnI	GCTCC	2 cut(s)	236, 1870
Lsp1109I	GCAGC	8 cut(s)	517, 744, 834, 1354, 1459, 1487, 2084, 2597
LweI	GCATC	6 cut(s)	977, 1305, 1348, 1793, 2014, 2320
MaeI	CTAG	6 cut(s)	65, 363, 876, 990, 1655, 2001
MaeII	ACGT	1 cut(s)	1440
MaeIII	GTNAC	7 cut(s)	121, 687, 1451, 1675, 1993, 2365, 2626
MflI	RGATCY	2 cut(s)	955, 1797
MhlI	GDGCHC	4 cut(s)	8, 700, 1875, 2043
MlsI	TGGCCA	1 cut(s)	44
MluNI	TGGCCA	1 cut(s)	44
Mly113I	GGCGCC	1 cut(s)	1420
MlyI	GAGTC	7 cut(s)	323, 410, 437, 854, 901, 1139, 2453
MmeI	TCCRAC	2 cut(s)	189, 297
Mox20I	TGGCCA	1 cut(s)	44
Mph1103I	ATGCAT	2 cut(s)	970, 1786
MroXI	GAANNNNTTC	3 cut(s)	1200, 1569, 1908
MscI	TGGCCA	1 cut(s)	44
MslI	CAYNNNNRTG	1 cut(s)	501
Msp20I	TGGCCA	1 cut(s)	44
MspA1I	CMGCKG	1 cut(s)	1478
MspI	CCGG	1 cut(s)	1171
MspR9I	CCNGG	5 cut(s)	949, 1098, 1171, 1939, 2538
Mva1269I	GAATGC	1 cut(s)	1138
MvaI	CCWGG	4 cut(s)	949, 1098, 1939, 2538
MvnI	CGCG	2 cut(s)	561, 660
MwoI	GCNNNNNNNGC	4 cut(s)	822, 1079, 1367, 2012
NarI	GGCGCC	1 cut(s)	1420
NciI	CCSGG	1 cut(s)	1171
NcoI	CCATGG	1 cut(s)	1764
NlaIV	GGNNCC	3 cut(s)	186, 726, 1421
NmuCI	GTSAC	4 cut(s)	687, 1451, 1993, 2626
NsiI	ATGCAT	2 cut(s)	970, 1786
NspI	RCATGY	3 cut(s)	1811, 1879, 1979
PaeI	GCATGC	1 cut(s)	1979
PaqCI	CACCTGC	1 cut(s)	2192
PceI	AGGCCT	1 cut(s)	75
PciI	ACATGT	1 cut(s)	1875
PctI	GAATGC	1 cut(s)	1138
PdmI	GAANNNNTTC	3 cut(s)	1200, 1569, 1908
PfeI	GAWTC	9 cut(s)	149, 545, 596, 620, 893, 1235, 1270, 1514, 2030
PfoI	TCCNGGA	1 cut(s)	1096
Ple19I	CGATCG	1 cut(s)	925
PleI	GAGTC	7 cut(s)	322, 410, 436, 853, 901, 1139, 2453
PluTI	GGCGCC	1 cut(s)	1423
PpsI	GAGTC	7 cut(s)	322, 410, 436, 853, 901, 1139, 2453
PscI	ACATGT	1 cut(s)	1875
Psp6I	CCWGG	4 cut(s)	947, 1096, 1937, 2536
PspEI	GGTNACC	2 cut(s)	687, 1451
PspGI	CCWGG	4 cut(s)	947, 1096, 1937, 2536
PspN4I	GGNNCC	3 cut(s)	186, 726, 1421
PspPI	GGNCC	6 cut(s)	184, 448, 725, 1595, 1640, 2236
PstI	CTGCAG	1 cut(s)	1477
PstNI	CAGNNNCTG	2 cut(s)	1472, 2033
PsuI	RGATCY	2 cut(s)	955, 1797
PvuI	CGATCG	1 cut(s)	925
PvuII	CAGCTG	1 cut(s)	1478
RsaI	GTAC	3 cut(s)	265, 390, 1044
RsaNI	GTAC	3 cut(s)	264, 389, 1043
RseI	CAYNNNNRTG	1 cut(s)	501
SalI	GTCGAC	1 cut(s)	1664
Sau96I	GGNCC	6 cut(s)	184, 448, 725, 1595, 1640, 2236
ScaI	AGTACT	1 cut(s)	265
SchI	GAGTC	7 cut(s)	323, 410, 437, 854, 901, 1139, 2453
ScrFI	CCNGG	5 cut(s)	949, 1098, 1171, 1939, 2538
SduI	GDGCHC	4 cut(s)	8, 700, 1875, 2043
SfaNI	GCATC	6 cut(s)	977, 1305, 1348, 1793, 2014, 2320
SfcI	CTRYAG	1 cut(s)	1473
SfoI	GGCGCC	1 cut(s)	1421
SinI	GGWCC	3 cut(s)	448, 1595, 1640
SmiMI	CAYNNNNRTG	1 cut(s)	501
SmlI	CTYRAG	2 cut(s)	817, 1353
SmoI	CTYRAG	2 cut(s)	817, 1353
SphI	GCATGC	1 cut(s)	1979
SseBI	AGGCCT	1 cut(s)	75
SsiI	CCGC	5 cut(s)	22, 62, 658, 1080, 1694
SspDI	GGCGCC	1 cut(s)	1419
SspI	AATATT	1 cut(s)	1201
SspMI	CTAG	6 cut(s)	65, 363, 876, 990, 1655, 2001
StuI	AGGCCT	1 cut(s)	75
StyD4I	CCNGG	5 cut(s)	947, 1096, 1169, 1937, 2536
StyI	CCWWGG	4 cut(s)	692, 875, 1764, 2263
TaaI	ACNGT	6 cut(s)	1025, 1495, 1735, 1887, 2374, 2632
TaiI	ACGT	1 cut(s)	1443
TaqI	TCGA	4 cut(s)	419, 1547, 1665, 2532
TaqII	GACCGA	1 cut(s)	675
TatI	WGTACW	3 cut(s)	263, 388, 1042
TauI	GCSGC	2 cut(s)	25, 64
TfiI	GAWTC	9 cut(s)	149, 545, 596, 620, 893, 1235, 1270, 1514, 2030
TscAI	CASTG	4 cut(s)	1473, 1890, 2048, 2637
TseFI	GTSAC	4 cut(s)	687, 1451, 1993, 2626
TseI	GCWGC	8 cut(s)	530, 732, 822, 1367, 1472, 1475, 2072, 2585
Tsp45I	GTSAC	4 cut(s)	687, 1451, 1993, 2626
TspDTI	ATGAA	9 cut(s)	42, 65, 101, 483, 1178, 1380, 1522, 2175, 2339
TspGWI	ACGGA	3 cut(s)	287, 1129, 1138
TspRI	CASTG	4 cut(s)	1473, 1890, 2048, 2637
VpaK11BI	GGWCC	3 cut(s)	448, 1595, 1640
XapI	RAATTY	4 cut(s)	570, 1247, 2050, 2666
XbaI	TCTAGA	1 cut(s)	1654
XceI	RCATGY	3 cut(s)	1811, 1879, 1979
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1945
XmaJI	CCTAGG	1 cut(s)	875
XmiI	GTMKAC	2 cut(s)	806, 1665
XmnI	GAANNNNTTC	3 cut(s)	1200, 1569, 1908
XspI	CTAG	6 cut(s)	65, 363, 876, 990, 1655, 2001
ZrmI	AGTACT	1 cut(s)	265
Zsp2I	ATGCAT	2 cut(s)	970, 1786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.