MD13G1241700.v1.1

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0004332
Physical Location & Seq
Forward (+)
25119775 .. 25129418
9644 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1241700.v1.1.491

Sequence Viewer

Length: 1347 bp
ATGTCTGAAAGTTCTGCACCTAATCTCGTTTATAAAAGGAGGAAGTTACGAGGAAACCCTGTCACCGGGTTTCCAGGAGGTCGAGAAAACACTATAAGTGGTGATTATTTTTCTTTTCTAAATTCTGAAGCTTCTGCAGTTGCTGGTAAGGAACGACTTGCTTCTCAATTAGAGCATGAAACTGAAGCCACTCGAGCTCATTTTGTAGCTCCTCGTTTATGCAAGAGAGTCTCTCATGTTTTAAATTCAGAATCTTGTAATGGATGTTCTGCTGGTGAGGAATTAGTTTCTGATGAAGCACCTAAAAATAACGTGCAAAAACTTTTAGAGGTAAGCAGCGTAAATGATAGTTGTTCATCATCAAAGTCAAATATGGAGCATGCTTCAACTTCCATGAAGACTTTAGTACATGAAACAGGTGAGTGCTCCTCTTCTAGTGCAGTAGTTATGGAGGTTGTGGGAGACCTGTCTGAAAAGGATCTATGCATCTCTATTCTTAGAAGCCATGGACTGCTTGGGGATTCCCAGGCTACCATGAACAGTGGTTCTGCTGAAGACACTGGCACCATTGGCAGTGACATCCATCGCCGGTCATGCACAATTTGTAGTCGTTCTGGAACCACTTTGAAAATGCTAATTTGTGATCATTGTGAAGAGGCATTTCACATGTCGTGCTGCCACCCCCGTATGAAGAAACCTCCTATTGATGAATGGTTCTGTCATTCTTGTTTGAAAAAGAAACATAAGATTTTACAGGAGCAAGTGACCCAAAAATCGCCAAATATCACGAGTGTCATGAGTAGGGAAGCATCACCCAAGGGCCAAATGAATCCCATAATGTTAATGTTGAGAGACATTGAACTGTATAGAACTAGTGTTCGGGTTGGCAAAGGGTTTCAAGCGGAAGTTCCTAACTGGTCTGGCCCAACAAATGGTGATATCAATGGCATTGGTGAACCATTGGAAATAGACTCGTCAGAATATGCTAGATTCAATGGGCTGAACTGCAATAAACCTTCTAGACATAGCTCTATAGGTAATTGGCTTCAATGTCGAGAAGTTGTAGATCGCTTAAACAGAACTATTTGTGGAAAGTGGCGCAGGGCTCCTCTTTTTGAAGTCCAAACTGATGACTGGGAGTGCTTCTGCTCTATCCTTTGGGATCCAAGCCATGCTGATTGTAACGTGCCTCAGGAACTGGAAACGGATCAAGTTCTAAAGCAACTGAAGTATATTGAGACGCTGAGGCCCCGGTTATGTGCTAAACGGCATACTTTGGATGGAACCAAGAGTGCTGGTGATCTGAAAACCCCCATAGTAGGTACAAAAAGTGTACAAACTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0019899 GO:0070063
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2 PHD

Protein Analysis

449

Amino Acids

49.54

Weight (kDa)

6.93

Isoelectric Point (pI)

51.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 199 - 243 9e-09 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 33
AccB1I GGYRCC 1 cut(s) 563
AccB7I CCANNNNNTGG 1 cut(s) 932
AciI CCGC 1 cut(s) 902
AclWI GGATC 4 cut(s) 486, 1157, 1170, 1215
AcsI RAATTY 2 cut(s) 121, 244
AcuI CTGAAG 4 cut(s) 147, 204, 573, 1247
AfaI GTAC 3 cut(s) 408, 1324, 1335
AfiI CCNNNNNNNGG 3 cut(s) 65, 932, 1319
AflIII ACRYGT 1 cut(s) 666
AgsI TTSAA 8 cut(s) 387, 628, 733, 860, 899, 994, 1049, 1118
AhlI ACTAGT 1 cut(s) 872
AjnI CCWGG 2 cut(s) 73, 525
AluBI AGCT 4 cut(s) 131, 197, 209, 1029
AluI AGCT 4 cut(s) 131, 197, 209, 1029
Alw21I GWGCWC 2 cut(s) 199, 428
Alw26I GTCTC 4 cut(s) 235, 456, 846, 1232
AlwI GGATC 4 cut(s) 486, 1157, 1170, 1215
AlwNI CAGNNNCTG 2 cut(s) 143, 1198
Ama87I CYCGRG 1 cut(s) 192
AoxI GGCC 3 cut(s) 820, 922, 1247
ApeKI GCWGC 2 cut(s) 336, 675
ApoI RAATTY 2 cut(s) 121, 244
AspLEI GCGC 1 cut(s) 1101
AspS9I GGNCC 3 cut(s) 820, 923, 1248
AsuC2I CCSGG 2 cut(s) 67, 1252
AsuHPI GGTGA 8 cut(s) 55, 113, 287, 431, 804, 947, 965, 1310
AvaI CYCGRG 1 cut(s) 192
AxyI CCTNAGG 1 cut(s) 1191
BamHI GGATCC 1 cut(s) 1162
BanI GGYRCC 1 cut(s) 563
BanII GRGCYC 2 cut(s) 199, 1108
BauI CACGAG 1 cut(s) 787
BbsI GAAGAC 2 cut(s) 404, 561
Bbv12I GWGCWC 2 cut(s) 199, 428
BbvCI CCTCAGC 1 cut(s) 1244
BbvI GCAGC 2 cut(s) 348, 662
BccI CCATC 2 cut(s) 591, 1274
BceAI ACGGC 1 cut(s) 1283
BciT130I CCWGG 2 cut(s) 75, 527
BclI TGATCA 1 cut(s) 643
BcnI CCSGG 2 cut(s) 67, 1252
BcoDI GTCTC 4 cut(s) 235, 456, 846, 1232
BcuI ACTAGT 1 cut(s) 872
BfaI CTAG 4 cut(s) 435, 873, 987, 1020
BfmI CTRYAG 2 cut(s) 135, 1032
BisI GCNGC 2 cut(s) 337, 676
BlsI GCNGC 2 cut(s) 338, 677
Bme1390I CCNGG 4 cut(s) 67, 75, 527, 1252
BmeT110I CYCGRG 1 cut(s) 192
BmgT120I GGNCC 3 cut(s) 820, 923, 1248
BmiI GGNNCC 6 cut(s) 565, 619, 1107, 1164, 1250, 1285
BmrFI CCNGG 4 cut(s) 67, 75, 527, 1252
BmrI ACTGGG 1 cut(s) 1144
BmsI GCATC 2 cut(s) 495, 818
BmuI ACTGGG 1 cut(s) 1144
BpiI GAAGAC 2 cut(s) 404, 561
BplI GAGNNNNNCTC 4 cut(s) 217, 249, 413, 445
Bpu10I CCTNAGC 1 cut(s) 1244
BpuMI CCSGG 2 cut(s) 67, 1252
BsaI GGTCTC 1 cut(s) 456
BsaJI CCNNGG 4 cut(s) 505, 525, 816, 1250
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 932, 1319
Bse118I RCCGGY 1 cut(s) 588
Bse1I ACTGG 4 cut(s) 565, 920, 1139, 1203
Bse21I CCTNAGG 1 cut(s) 1191
BseBI CCWGG 2 cut(s) 75, 527
BseDI CCNNGG 4 cut(s) 505, 525, 816, 1250
BseGI GGATG 3 cut(s) 269, 579, 1285
BseLI CCNNNNNNNGG 3 cut(s) 65, 932, 1319
BseMII CTCAG 2 cut(s) 1205, 1235
BseNI ACTGG 4 cut(s) 565, 920, 1139, 1203
BseRI GAGGAG 3 cut(s) 201, 418, 1098
BseXI GCAGC 2 cut(s) 348, 662
BsgI GTGCAG 1 cut(s) 459
BshFI GGCC 3 cut(s) 822, 924, 1249
BshNI GGYRCC 1 cut(s) 563
BsiHKAI GWGCWC 2 cut(s) 199, 428
BsiHKCI CYCGRG 1 cut(s) 192
BsiSI CCGG 3 cut(s) 66, 589, 1252
BslI CCNNNNNNNGG 3 cut(s) 65, 932, 1319
BsmAI GTCTC 4 cut(s) 235, 456, 846, 1232
BsmBI CGTCTC 1 cut(s) 1232
BsnI GGCC 3 cut(s) 822, 924, 1249
Bso31I GGTCTC 1 cut(s) 456
BsoBI CYCGRG 1 cut(s) 192
Bsp1286I GDGCHC 3 cut(s) 199, 428, 1108
Bsp1407I TGTACA 1 cut(s) 1333
Bsp143I GATC 6 cut(s) 478, 643, 1066, 1162, 1207, 1300
Bsp19I CCATGG 1 cut(s) 505
BspACI CCGC 1 cut(s) 902
BspANI GGCC 3 cut(s) 822, 924, 1249
BspCNI CTCAG 2 cut(s) 1204, 1236
BspHI TCATGA 1 cut(s) 795
BspLI GGNNCC 6 cut(s) 565, 619, 1107, 1164, 1250, 1285
BspMAI CTGCAG 1 cut(s) 139
BspPI GGATC 4 cut(s) 486, 1157, 1170, 1215
BspT107I GGYRCC 1 cut(s) 563
BspTNI GGTCTC 1 cut(s) 456
BsrFI RCCGGY 1 cut(s) 588
BsrGI TGTACA 1 cut(s) 1333
BsrI ACTGG 4 cut(s) 565, 920, 1139, 1203
BssAI RCCGGY 1 cut(s) 588
BssECI CCNNGG 4 cut(s) 505, 525, 816, 1250
BssMI GATC 6 cut(s) 478, 643, 1066, 1162, 1207, 1300
BssSI CACGAG 1 cut(s) 787
BssT1I CCWWGG 2 cut(s) 505, 816
Bst2BI CACGAG 1 cut(s) 787
Bst2UI CCWGG 2 cut(s) 75, 527
Bst4CI ACNGT 2 cut(s) 542, 864
Bst6I CTCTTC 2 cut(s) 436, 648
BstAUI TGTACA 1 cut(s) 1333
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 3 cut(s) 497, 1191, 1244
BstDSI CCRYGG 1 cut(s) 505
BstF5I GGATG 3 cut(s) 269, 579, 1285
BstHHI GCGC 1 cut(s) 1101
BstKTI GATC 6 cut(s) 481, 646, 1069, 1165, 1210, 1303
BstMAI GTCTC 4 cut(s) 235, 456, 846, 1232
BstMBI GATC 6 cut(s) 478, 643, 1066, 1162, 1207, 1300
BstMWI GCNNNNNNNGC 3 cut(s) 194, 570, 594
BstNI CCWGG 2 cut(s) 75, 527
BstNSI RCATGY 2 cut(s) 383, 670
BstSCI CCNGG 4 cut(s) 65, 73, 525, 1250
BstSFI CTRYAG 2 cut(s) 135, 1032
BstV1I GCAGC 2 cut(s) 348, 662
BstV2I GAAGAC 2 cut(s) 404, 561
BstX2I RGATCY 2 cut(s) 478, 1162
BstYI RGATCY 2 cut(s) 478, 1162
Bsu36I CCTNAGG 1 cut(s) 1191
BsuRI GGCC 3 cut(s) 822, 924, 1249
BtgI CCRYGG 1 cut(s) 505
BtgZI GCGATG 1 cut(s) 569
BtsCI GGATG 3 cut(s) 269, 579, 1285
BtsI GCAGTG 1 cut(s) 580
BtsIMutI CAGTG 3 cut(s) 547, 558, 580
Cac8I GCNNGC 1 cut(s) 381
CaiI CAGNNNCTG 2 cut(s) 143, 1198
CciI TCATGA 1 cut(s) 795
CfoI GCGC 1 cut(s) 1101
Cfr10I RCCGGY 1 cut(s) 588
Cfr13I GGNCC 3 cut(s) 820, 923, 1248
CseI GACGC 1 cut(s) 1249
Csp6I GTAC 3 cut(s) 407, 1323, 1334
CviQI GTAC 3 cut(s) 407, 1323, 1334
DdeI CTNAG 3 cut(s) 497, 1191, 1244
DpnI GATC 6 cut(s) 480, 645, 1068, 1164, 1209, 1302
DpnII GATC 6 cut(s) 478, 643, 1066, 1162, 1207, 1300
DraI TTTAAA 1 cut(s) 243
Eam1104I CTCTTC 2 cut(s) 436, 648
EarI CTCTTC 2 cut(s) 436, 648
Ecl136II GAGCTC 1 cut(s) 197
Eco130I CCWWGG 2 cut(s) 505, 816
Eco24I GRGCYC 2 cut(s) 199, 1108
Eco31I GGTCTC 1 cut(s) 456
Eco32I GATATC 1 cut(s) 940
Eco53kI GAGCTC 1 cut(s) 197
Eco57I CTGAAG 4 cut(s) 147, 204, 573, 1247
Eco81I CCTNAGG 1 cut(s) 1191
Eco88I CYCGRG 1 cut(s) 192
EcoICRI GAGCTC 1 cut(s) 197
EcoO109I RGGNCCY 1 cut(s) 1248
EcoRII CCWGG 2 cut(s) 73, 525
EcoRV GATATC 1 cut(s) 940
EcoT14I CCWWGG 2 cut(s) 505, 816
EcoT22I ATGCAT 1 cut(s) 488
EcoT38I GRGCYC 2 cut(s) 199, 1108
ErhI CCWWGG 2 cut(s) 505, 816
Esp3I CGTCTC 1 cut(s) 1232
FbaI TGATCA 1 cut(s) 643
Fnu4HI GCNGC 2 cut(s) 337, 676
FokI GGATG 3 cut(s) 276, 566, 1292
FriOI GRGCYC 2 cut(s) 199, 1108
Fsp4HI GCNGC 2 cut(s) 337, 676
FspBI CTAG 4 cut(s) 435, 873, 987, 1020
GlaI GCGC 1 cut(s) 1100
GluI GCNGC 2 cut(s) 337, 676
HaeIII GGCC 3 cut(s) 822, 924, 1249
HapII CCGG 3 cut(s) 66, 589, 1252
HgaI GACGC 1 cut(s) 1249
HhaI GCGC 1 cut(s) 1101
Hin6I GCGC 1 cut(s) 1099
HinP1I GCGC 1 cut(s) 1099
HindIII AAGCTT 1 cut(s) 129
HinfI GANTC 6 cut(s) 228, 251, 521, 829, 971, 990
HpaII CCGG 3 cut(s) 66, 589, 1252
HphI GGTGA 8 cut(s) 55, 113, 287, 431, 804, 947, 965, 1310
Hpy166II GTNNAC 2 cut(s) 956, 1334
Hpy188I TCNGA 7 cut(s) 7, 127, 250, 292, 472, 979, 1305
Hpy188III TCNNGA 7 cut(s) 83, 615, 787, 796, 1020, 1055, 1193
Hpy8I GTNNAC 2 cut(s) 956, 1334
HpyAV CCTTC 1 cut(s) 1026
HpyCH4III ACNGT 2 cut(s) 542, 864
HpyCH4IV ACGT 2 cut(s) 312, 1185
HpyCH4V TGCA 8 cut(s) 17, 137, 222, 316, 440, 486, 597, 1008
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 570, 594
HpyF3I CTNAG 3 cut(s) 497, 1191, 1244
HpySE526I ACGT 2 cut(s) 312, 1185
HspAI GCGC 1 cut(s) 1099
Ksp22I TGATCA 1 cut(s) 643
Kzo9I GATC 6 cut(s) 478, 643, 1066, 1162, 1207, 1300
LmnI GCTCC 5 cut(s) 214, 376, 431, 757, 1111
Lsp1109I GCAGC 2 cut(s) 348, 662
LweI GCATC 2 cut(s) 495, 818
MaeI CTAG 4 cut(s) 435, 873, 987, 1020
MaeII ACGT 2 cut(s) 312, 1185
MaeIII GTNAC 5 cut(s) 45, 61, 575, 763, 1181
MalI GATC 6 cut(s) 480, 645, 1068, 1164, 1209, 1302
MboI GATC 6 cut(s) 478, 643, 1066, 1162, 1207, 1300
MboII GAAGA 5 cut(s) 409, 423, 566, 665, 703
MflI RGATCY 2 cut(s) 478, 1162
MhlI GDGCHC 3 cut(s) 199, 428, 1108
MluCI AATT 7 cut(s) 121, 167, 244, 281, 600, 636, 1039
MlyI GAGTC 2 cut(s) 237, 965
Mph1103I ATGCAT 1 cut(s) 488
MseI TTAA 3 cut(s) 242, 842, 1073
MspI CCGG 3 cut(s) 66, 589, 1252
MspR9I CCNGG 4 cut(s) 67, 75, 527, 1252
MvaI CCWGG 2 cut(s) 75, 527
MwoI GCNNNNNNNGC 3 cut(s) 194, 570, 594
NciI CCSGG 2 cut(s) 67, 1252
NcoI CCATGG 1 cut(s) 505
NdeII GATC 6 cut(s) 478, 643, 1066, 1162, 1207, 1300
NlaIV GGNNCC 6 cut(s) 565, 619, 1107, 1164, 1250, 1285
NmuCI GTSAC 3 cut(s) 61, 575, 763
NsiI ATGCAT 1 cut(s) 488
NspI RCATGY 2 cut(s) 383, 670
PaeI GCATGC 1 cut(s) 383
PaeR7I CTCGAG 1 cut(s) 192
PagI TCATGA 1 cut(s) 795
PciI ACATGT 1 cut(s) 666
PfeI GAWTC 4 cut(s) 251, 521, 829, 990
PflMI CCANNNNNTGG 1 cut(s) 932
PfoI TCCNGGA 1 cut(s) 73
PkrI GCNGC 2 cut(s) 338, 677
PleI GAGTC 2 cut(s) 236, 965
PpsI GAGTC 2 cut(s) 236, 965
PscI ACATGT 1 cut(s) 666
PsiI TTATAA 1 cut(s) 33
Psp124BI GAGCTC 1 cut(s) 199
Psp6I CCWGG 2 cut(s) 73, 525
PspGI CCWGG 2 cut(s) 73, 525
PspN4I GGNNCC 6 cut(s) 565, 619, 1107, 1164, 1250, 1285
PspPI GGNCC 3 cut(s) 820, 923, 1248
PspXI VCTCGAGB 1 cut(s) 192
PsrI GAACNNNNNNTAC 2 cut(s) 250, 282
PstI CTGCAG 1 cut(s) 139
PstNI CAGNNNCTG 2 cut(s) 143, 1198
PsuI RGATCY 2 cut(s) 478, 1162
RsaI GTAC 3 cut(s) 408, 1324, 1335
RsaNI GTAC 3 cut(s) 407, 1323, 1334
SacI GAGCTC 1 cut(s) 199
SaqAI TTAA 3 cut(s) 242, 842, 1073
SatI GCNGC 2 cut(s) 337, 676
Sau3AI GATC 6 cut(s) 478, 643, 1066, 1162, 1207, 1300
Sau96I GGNCC 3 cut(s) 820, 923, 1248
SchI GAGTC 2 cut(s) 237, 965
ScrFI CCNGG 4 cut(s) 67, 75, 527, 1252
SduI GDGCHC 3 cut(s) 199, 428, 1108
SfaNI GCATC 2 cut(s) 495, 818
SfcI CTRYAG 2 cut(s) 135, 1032
Sfr274I CTCGAG 1 cut(s) 192
SlaI CTCGAG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 192
SmoI CTYRAG 1 cut(s) 192
SpeI ACTAGT 1 cut(s) 872
SphI GCATGC 1 cut(s) 383
Sse9I AATT 7 cut(s) 121, 167, 244, 281, 600, 636, 1039
SsiI CCGC 1 cut(s) 902
SspMI CTAG 4 cut(s) 435, 873, 987, 1020
SstI GAGCTC 1 cut(s) 199
StyD4I CCNGG 4 cut(s) 65, 73, 525, 1250
StyI CCWWGG 2 cut(s) 505, 816
TaaI ACNGT 2 cut(s) 542, 864
TaiI ACGT 2 cut(s) 315, 1188
TaqI TCGA 3 cut(s) 82, 193, 1054
TasI AATT 7 cut(s) 121, 167, 244, 281, 600, 636, 1039
TatI WGTACW 2 cut(s) 406, 1333
TfiI GAWTC 4 cut(s) 251, 521, 829, 990
Tru1I TTAA 3 cut(s) 242, 842, 1073
Tru9I TTAA 3 cut(s) 242, 842, 1073
TscAI CASTG 3 cut(s) 547, 565, 580
TseFI GTSAC 3 cut(s) 61, 575, 763
TseI GCWGC 2 cut(s) 336, 675
Tsp45I GTSAC 3 cut(s) 61, 575, 763
TspDTI ATGAA 9 cut(s) 192, 309, 345, 410, 426, 551, 704, 723, 842
TspGWI ACGGA 1 cut(s) 1220
TspRI CASTG 3 cut(s) 547, 565, 580
Van91I CCANNNNNTGG 1 cut(s) 932
XapI RAATTY 2 cut(s) 121, 244
XbaI TCTAGA 1 cut(s) 1019
XceI RCATGY 2 cut(s) 383, 670
XcmI CCANNNNNNNNNTGG 1 cut(s) 512
XhoI CTCGAG 1 cut(s) 192
XspI CTAG 4 cut(s) 435, 873, 987, 1020
Zsp2I ATGCAT 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.