Rw7G027740

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0004332
Physical Location & Seq
Forward (+)
36515527 .. 36520594
5068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G027740.1

Sequence Viewer

Length: 1815 bp
ATGTGTACAAAATGCGATGATCGTTGCAGTTGCAGAGATGCTCAACTAGCTTCAGAGGAAAAAAAGAATGCTGAGGATTCAAACAACTTAGTTTTTCCAAGAAGCTCTTCCCAGCTGTCAGCAATTAGTTTAATGTCTGAAAGTTCTGCACCTGATCTTGTATACAAGAGGAGGAAGTTACAAGAAAACTCTGAGACCATACTTTCAGCATGTGATGTGAAATACCCAAGAACTGGTGATTGCCTTTCATGTATACATTCTGATACTCCTTCACTTGCTGGTAAGGACCAATATGTTCATTCTCAAAAAGGGGAACTGTCAGCAACTAGTTTAATGTCTGAAAGTACTGCACCTAATCTTGTATACAAGAGGAGGAATTTACGAGAAAATTCTGTCACCATACTATCAGCGTGTGATGTGAAAAACCCGAGAACTGGTGATTGCCTTTCGTTTATACATTCTGATGCTCCTTCACTTGCTGGTAAGGATCAATATTTTCATTCTCAAAAAGGGGAACTGTCAGCGATTAGTATAATGTCTGAAAGTACTGCACCTAATCTTGTATACAAGAGGAAGAAGTTACGAGACCCGAGAACTGGTGATTGCCTTTCGTTTATACATTCTGATGCTCCTTCACTTGCTGGTAAGGCATATGTTCATTCTCAAAAAGGGGATCAGAATGGACCATGTTTATGCAATAGGGCATCTGCTGTTATAAAATCAAAGTCTTTTCATGGGTTTTCTGTTGATGAGGAATTAATTTCTAATGAAGCACCTAAAGCTAGTGTTCCAAAAGGTTTAGAAGTAGACAGTGTAAACGATAGTTGCTCGTCATCAAAGTCAAATATGGAGAACGTTTCCACCTCCAATAAGACTGAAGTAGATGAAACCGCTGATTGCTCCTCTTCTAGTGCAATTGTTATGGAAGCTGTGGGAGATCTGTCTGAAAAGGATCTCTGCATCTCTATTCTCAGAACCCATGGGCTGCTCGGGGAAGTTCGGATAACTAGGAGCTGTGGTTCTGCTGATGACATTAATACCAGTAGCAGCAAGAGCTGTCGACGGTCATGCAAAATTTGTAATCGTTCAGAAACCACTCTGAAAATGCTGATTTGTGATACTTGTGAAGAGGCATTTCACATGTCATGCTGCCAACCACGAATAAAGAAGGTACCTATAGATGAATGGTTCTGTCATTCCTGCTTGAGAGAGAAACATACAATTCTAAAAGAGAGAGTTACTAGAAAATTTCCGAATATCACTAGTGTCATGAGTAGGAATGCGTCATCTAAGGATGAGGTAAATCCCATACTATTGATGCTGAGAGACACTGAGCCATATAGAACTAGTGTTCGGGTTGGCAAAGGTTTTCAAGCGGAAGTTGATGACTGGTCAGGTCCAATAAACAATGACGACATTTGCGAACCGTTGGAATTACATCCTTCGGAGTATGCTAGACTGCATGAGTTGAATTCCAGCAAACCCTCAAAAATTAACTCTATAAGTAACTGGATCCAATGCCGAGAAGTTGTTGATCCTGAAAATGGAATAAGATGTGGAAAGTGGCGCAGGGCTCCTCTTTTTGAAGTCCAAACTAATGACTGGGAGTGCTTCTGCTCTGTTCTGTGGGATCCAAGCCACGCTGATTGTAATGTGCCTCAGGAATTGGAAACAGATCAAGTTCTAAAGCAACTGAAGTATGTTGAGACGCTAAGGCCCCGGCTATCTGCTCAACAGCATAATTTGGGTCGCGCCAACAGCACTGGTGATTTACAAAACCGCAGAATAGATACAAAAAGTATACAAACTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0019899 GO:0070063
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2 PHD

Protein Analysis

604

Amino Acids

67.16

Weight (kDa)

6.46

Isoelectric Point (pI)

51.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 357 - 401 1.1e-09 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 716
Acc65I GGTACC 1 cut(s) 1171
AccB1I GGYRCC 1 cut(s) 1171
AccB7I CCANNNNNTGG 1 cut(s) 233
AccI GTMKAC 7 cut(s) 162, 253, 363, 564, 807, 1060, 1801
AccII CGCG 1 cut(s) 1752
AciI CCGC 3 cut(s) 891, 1376, 1780
AclI AACGTT 1 cut(s) 855
AclWI GGATC 8 cut(s) 495, 681, 960, 1507, 1520, 1529, 1625, 1638
AcsI RAATTY 5 cut(s) 376, 388, 1074, 1247, 1471
AcuI CTGAAG 3 cut(s) 36, 897, 1715
AfaI GTAC 4 cut(s) 7, 346, 547, 1173
AfiI CCNNNNNNNGG 4 cut(s) 233, 434, 596, 1544
AflIII ACRYGT 1 cut(s) 1140
AgsI TTSAA 4 cut(s) 81, 1373, 1471, 1586
AhlI ACTAGT 3 cut(s) 326, 1262, 1346
AjuI GAANNNNNNNTTGG 2 cut(s) 91, 123
AloI GAACNNNNNNTCC 2 cut(s) 1003, 1035
AluBI AGCT 7 cut(s) 50, 105, 115, 782, 929, 1014, 1056
AluI AGCT 7 cut(s) 50, 105, 115, 782, 929, 1014, 1056
Alw26I GTCTC 4 cut(s) 188, 579, 1320, 1700
AlwI GGATC 8 cut(s) 495, 681, 960, 1507, 1520, 1529, 1625, 1638
Ama87I CYCGRG 3 cut(s) 427, 589, 989
AoxI GGCC 1 cut(s) 1715
ApeKI GCWGC 3 cut(s) 985, 1047, 1149
ApoI RAATTY 5 cut(s) 376, 388, 1074, 1247, 1471
AseI ATTAAT 2 cut(s) 758, 1035
Asp700I GAANNNNTTC 1 cut(s) 106
Asp718I GGTACC 1 cut(s) 1171
AspLEI GCGC 2 cut(s) 1569, 1754
AspS9I GGNCC 4 cut(s) 286, 683, 1397, 1716
AsuC2I CCSGG 1 cut(s) 1720
AsuHPI GGTGA 5 cut(s) 248, 388, 449, 611, 1778
AvaI CYCGRG 3 cut(s) 427, 589, 989
AvaII GGWCC 3 cut(s) 286, 683, 1397
AxyI CCTNAGG 1 cut(s) 1659
BamHI GGATCC 2 cut(s) 1512, 1630
BanI GGYRCC 1 cut(s) 1171
BanII GRGCYC 1 cut(s) 1576
BbvCI CCTCAGC 1 cut(s) 72
BbvI GCAGC 3 cut(s) 972, 1059, 1136
BcgI CGANNNNNNTGC 2 cut(s) 1050, 1084
BcnI CCSGG 1 cut(s) 1720
BcoDI GTCTC 4 cut(s) 188, 579, 1320, 1700
BcuI ACTAGT 3 cut(s) 326, 1262, 1346
BfaI CTAG 9 cut(s) 47, 327, 783, 909, 1008, 1242, 1263, 1347, 1455
BfmI CTRYAG 1 cut(s) 1176
BglII AGATCT 1 cut(s) 937
BisI GCNGC 3 cut(s) 986, 1048, 1150
BlsI GCNGC 3 cut(s) 987, 1049, 1151
BmcAI AGTACT 2 cut(s) 346, 547
Bme1390I CCNGG 1 cut(s) 1720
Bme18I GGWCC 3 cut(s) 286, 683, 1397
BmeT110I CYCGRG 3 cut(s) 427, 589, 989
BmgT120I GGNCC 4 cut(s) 286, 683, 1397, 1716
BmiI GGNNCC 5 cut(s) 1173, 1514, 1575, 1632, 1718
BmrFI CCNGG 1 cut(s) 1720
BmrI ACTGGG 1 cut(s) 1612
BmsI GCATC 6 cut(s) 28, 454, 616, 713, 969, 1308
BmuI ACTGGG 1 cut(s) 1612
Bpu10I CCTNAGC 2 cut(s) 72, 1712
BpuEI CTTGAG 1 cut(s) 1225
BpuMI CCSGG 1 cut(s) 1720
BsaI GGTCTC 2 cut(s) 188, 579
BsaJI CCNNGG 2 cut(s) 979, 1718
BsaXI ACNNNNNCTCC 2 cut(s) 1003, 1033
Bsc4I CCNNNNNNNGG 4 cut(s) 233, 434, 596, 1544
Bse1I ACTGG 8 cut(s) 238, 439, 601, 1041, 1394, 1514, 1607, 1768
Bse21I CCTNAGG 1 cut(s) 1659
BseDI CCNNGG 2 cut(s) 979, 1718
BseGI GGATG 2 cut(s) 1300, 1438
BseLI CCNNNNNNNGG 4 cut(s) 233, 434, 596, 1544
BseMII CTCAG 6 cut(s) 63, 183, 985, 1313, 1323, 1673
BseNI ACTGG 8 cut(s) 238, 439, 601, 1041, 1394, 1514, 1607, 1768
BseRI GAGGAG 4 cut(s) 184, 385, 892, 1566
BseXI GCAGC 3 cut(s) 972, 1059, 1136
BseYI CCCAGC 1 cut(s) 111
BsgI GTGCAG 3 cut(s) 132, 333, 534
Bsh1236I CGCG 1 cut(s) 1752
BshFI GGCC 1 cut(s) 1717
BshNI GGYRCC 1 cut(s) 1171
BsiHKCI CYCGRG 3 cut(s) 427, 589, 989
BsiSI CCGG 1 cut(s) 1720
BslI CCNNNNNNNGG 4 cut(s) 233, 434, 596, 1544
BsmAI GTCTC 4 cut(s) 188, 579, 1320, 1700
BsmBI CGTCTC 1 cut(s) 1700
BsmI GAATGC 2 cut(s) 73, 1285
BsnI GGCC 1 cut(s) 1717
Bso31I GGTCTC 2 cut(s) 188, 579
BsoBI CYCGRG 3 cut(s) 427, 589, 989
Bsp1286I GDGCHC 1 cut(s) 1576
Bsp1407I TGTACA 1 cut(s) 5
Bsp19I CCATGG 1 cut(s) 979
BspACI CCGC 3 cut(s) 891, 1376, 1780
BspANI GGCC 1 cut(s) 1717
BspCNI CTCAG 6 cut(s) 64, 184, 984, 1314, 1324, 1672
BspFNI CGCG 1 cut(s) 1752
BspHI TCATGA 1 cut(s) 1269
BspLI GGNNCC 5 cut(s) 1173, 1514, 1575, 1632, 1718
BspPI GGATC 8 cut(s) 495, 681, 960, 1507, 1520, 1529, 1625, 1638
BspQI GCTCTTC 1 cut(s) 112
BspT107I GGYRCC 1 cut(s) 1171
BspTNI GGTCTC 2 cut(s) 188, 579
BsrGI TGTACA 1 cut(s) 5
BsrI ACTGG 8 cut(s) 238, 439, 601, 1041, 1394, 1514, 1607, 1768
BssECI CCNNGG 2 cut(s) 979, 1718
BssNAI GTATAC 5 cut(s) 163, 254, 364, 565, 1802
BssT1I CCWWGG 1 cut(s) 979
Bst1107I GTATAC 5 cut(s) 163, 254, 364, 565, 1802
Bst4CI ACNGT 5 cut(s) 318, 519, 812, 1065, 1428
Bst6I CTCTTC 3 cut(s) 112, 910, 1122
BstAUI TGTACA 1 cut(s) 5
BstDEI CTNAG 9 cut(s) 72, 88, 192, 971, 1290, 1322, 1332, 1659, 1712
BstDSI CCRYGG 1 cut(s) 979
BstF5I GGATG 2 cut(s) 1300, 1438
BstFNI CGCG 1 cut(s) 1752
BstHHI GCGC 2 cut(s) 1569, 1754
BstMAI GTCTC 4 cut(s) 188, 579, 1320, 1700
BstMWI GCNNNNNNNGC 5 cut(s) 47, 647, 779, 1053, 1758
BstNSI RCATGY 2 cut(s) 213, 1144
BstSCI CCNGG 1 cut(s) 1718
BstSFI CTRYAG 1 cut(s) 1176
BstUI CGCG 1 cut(s) 1752
BstV1I GCAGC 3 cut(s) 972, 1059, 1136
BstX2I RGATCY 4 cut(s) 937, 952, 1512, 1630
BstYI RGATCY 4 cut(s) 937, 952, 1512, 1630
BstZ17I GTATAC 5 cut(s) 163, 254, 364, 565, 1802
Bsu36I CCTNAGG 1 cut(s) 1659
BsuRI GGCC 1 cut(s) 1717
BtgI CCRYGG 1 cut(s) 979
BtgZI GCGATG 1 cut(s) 30
BtsCI GGATG 2 cut(s) 1300, 1438
BtsIMutI CAGTG 3 cut(s) 817, 1329, 1761
CciI TCATGA 1 cut(s) 1269
CfoI GCGC 2 cut(s) 1569, 1754
Cfr13I GGNCC 4 cut(s) 286, 683, 1397, 1716
CseI GACGC 2 cut(s) 1272, 1717
Csp6I GTAC 4 cut(s) 6, 345, 546, 1172
CspCI CAANNNNNGTGG 2 cut(s) 1628, 1663
CviQI GTAC 4 cut(s) 6, 345, 546, 1172
DdeI CTNAG 9 cut(s) 72, 88, 192, 971, 1290, 1322, 1332, 1659, 1712
Eam1104I CTCTTC 3 cut(s) 112, 910, 1122
EarI CTCTTC 3 cut(s) 112, 910, 1122
Eco130I CCWWGG 1 cut(s) 979
Eco24I GRGCYC 1 cut(s) 1576
Eco31I GGTCTC 2 cut(s) 188, 579
Eco47I GGWCC 3 cut(s) 286, 683, 1397
Eco57I CTGAAG 3 cut(s) 36, 897, 1715
Eco81I CCTNAGG 1 cut(s) 1659
Eco88I CYCGRG 3 cut(s) 427, 589, 989
EcoO109I RGGNCCY 1 cut(s) 1716
EcoRI GAATTC 1 cut(s) 1471
EcoT14I CCWWGG 1 cut(s) 979
EcoT38I GRGCYC 1 cut(s) 1576
ErhI CCWWGG 1 cut(s) 979
Esp3I CGTCTC 1 cut(s) 1700
FalI AAGNNNNNCTT 2 cut(s) 91, 123
FauNDI CATATG 1 cut(s) 652
FblI GTMKAC 7 cut(s) 162, 253, 363, 564, 807, 1060, 1801
Fnu4HI GCNGC 3 cut(s) 986, 1048, 1150
FokI GGATG 2 cut(s) 1307, 1425
FriOI GRGCYC 1 cut(s) 1576
Fsp4HI GCNGC 3 cut(s) 986, 1048, 1150
FspBI CTAG 9 cut(s) 47, 327, 783, 909, 1008, 1242, 1263, 1347, 1455
GlaI GCGC 2 cut(s) 1568, 1753
GluI GCNGC 3 cut(s) 986, 1048, 1150
GsaI CCCAGC 1 cut(s) 115
HaeIII GGCC 1 cut(s) 1717
HapII CCGG 1 cut(s) 1720
HgaI GACGC 2 cut(s) 1272, 1717
HhaI GCGC 2 cut(s) 1569, 1754
Hin6I GCGC 2 cut(s) 1567, 1752
HinP1I GCGC 2 cut(s) 1567, 1752
HincII GTYRAC 1 cut(s) 1061
HindII GTYRAC 1 cut(s) 1061
HinfI GANTC 1 cut(s) 77
HpaII CCGG 1 cut(s) 1720
HphI GGTGA 5 cut(s) 248, 388, 449, 611, 1778
Hpy166II GTNNAC 9 cut(s) 6, 163, 254, 364, 565, 808, 817, 1061, 1802
Hpy188III TCNNGA 3 cut(s) 1270, 1538, 1661
Hpy8I GTNNAC 9 cut(s) 6, 163, 254, 364, 565, 808, 817, 1061, 1802
Hpy99I CGWCG 1 cut(s) 1065
HpyAV CCTTC 5 cut(s) 279, 480, 642, 1162, 1452
HpyCH4III ACNGT 5 cut(s) 318, 519, 812, 1065, 1428
HpyCH4IV ACGT 1 cut(s) 855
HpyF10VI GCNNNNNNNGC 5 cut(s) 47, 647, 779, 1053, 1758
HpyF3I CTNAG 9 cut(s) 72, 88, 192, 971, 1290, 1322, 1332, 1659, 1712
HpySE526I ACGT 1 cut(s) 855
HspAI GCGC 2 cut(s) 1567, 1752
KpnI GGTACC 1 cut(s) 1175
LguI GCTCTTC 1 cut(s) 112
LmnI GCTCC 5 cut(s) 472, 634, 905, 1011, 1579
Lsp1109I GCAGC 3 cut(s) 972, 1059, 1136
LweI GCATC 6 cut(s) 28, 454, 616, 713, 969, 1308
MaeI CTAG 9 cut(s) 47, 327, 783, 909, 1008, 1242, 1263, 1347, 1455
MaeII ACGT 1 cut(s) 855
MaeIII GTNAC 5 cut(s) 177, 394, 579, 1237, 1505
MboII GAAGA 4 cut(s) 99, 586, 897, 1139
MfeI CAATTG 1 cut(s) 915
MflI RGATCY 4 cut(s) 937, 952, 1512, 1630
MhlI GDGCHC 1 cut(s) 1576
MmeI TCCRAC 1 cut(s) 1410
MroXI GAANNNNTTC 1 cut(s) 106
MseI TTAA 5 cut(s) 131, 332, 758, 1035, 1494
MslI CAYNNNNRTG 3 cut(s) 462, 624, 691
MspA1I CMGCKG 2 cut(s) 115, 893
MspI CCGG 1 cut(s) 1720
MspR9I CCNGG 1 cut(s) 1720
MunI CAATTG 1 cut(s) 915
Mva1269I GAATGC 2 cut(s) 73, 1285
MvnI CGCG 1 cut(s) 1752
MwoI GCNNNNNNNGC 5 cut(s) 47, 647, 779, 1053, 1758
NciI CCSGG 1 cut(s) 1720
NcoI CCATGG 1 cut(s) 979
NdeI CATATG 1 cut(s) 652
NlaIV GGNNCC 5 cut(s) 1173, 1514, 1575, 1632, 1718
NmeAIII GCCGAG 1 cut(s) 1547
NmuCI GTSAC 1 cut(s) 394
NspI RCATGY 2 cut(s) 213, 1144
PagI TCATGA 1 cut(s) 1269
PciI ACATGT 1 cut(s) 1140
PciSI GCTCTTC 1 cut(s) 112
PcsI WCGNNNNNNNCGW 1 cut(s) 1419
PctI GAATGC 2 cut(s) 73, 1285
PdmI GAANNNNTTC 1 cut(s) 106
PfeI GAWTC 1 cut(s) 77
PflMI CCANNNNNTGG 1 cut(s) 233
PkrI GCNGC 3 cut(s) 987, 1049, 1151
PscI ACATGT 1 cut(s) 1140
PshBI ATTAAT 2 cut(s) 758, 1035
PsiI TTATAA 1 cut(s) 716
Psp1406I AACGTT 1 cut(s) 855
PspFI CCCAGC 1 cut(s) 111
PspN4I GGNNCC 5 cut(s) 1173, 1514, 1575, 1632, 1718
PspPI GGNCC 4 cut(s) 286, 683, 1397, 1716
PsuI RGATCY 4 cut(s) 937, 952, 1512, 1630
PvuII CAGCTG 1 cut(s) 115
RsaI GTAC 4 cut(s) 7, 346, 547, 1173
RsaNI GTAC 4 cut(s) 6, 345, 546, 1172
RseI CAYNNNNRTG 3 cut(s) 462, 624, 691
SalI GTCGAC 1 cut(s) 1059
SapI GCTCTTC 1 cut(s) 112
SaqAI TTAA 5 cut(s) 131, 332, 758, 1035, 1494
SatI GCNGC 3 cut(s) 986, 1048, 1150
Sau96I GGNCC 4 cut(s) 286, 683, 1397, 1716
ScaI AGTACT 2 cut(s) 346, 547
ScrFI CCNGG 1 cut(s) 1720
SduI GDGCHC 1 cut(s) 1576
SfaNI GCATC 6 cut(s) 28, 454, 616, 713, 969, 1308
SfcI CTRYAG 1 cut(s) 1176
SinI GGWCC 3 cut(s) 286, 683, 1397
SmiMI CAYNNNNRTG 3 cut(s) 462, 624, 691
SmlI CTYRAG 1 cut(s) 1204
SmoI CTYRAG 1 cut(s) 1204
SpeI ACTAGT 3 cut(s) 326, 1262, 1346
SsiI CCGC 3 cut(s) 891, 1376, 1780
SspI AATATT 1 cut(s) 494
SspMI CTAG 9 cut(s) 47, 327, 783, 909, 1008, 1242, 1263, 1347, 1455
StyD4I CCNGG 1 cut(s) 1718
StyI CCWWGG 1 cut(s) 979
TaaI ACNGT 5 cut(s) 318, 519, 812, 1065, 1428
TaiI ACGT 1 cut(s) 858
TaqI TCGA 1 cut(s) 1060
TatI WGTACW 3 cut(s) 5, 344, 545
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 5 cut(s) 131, 332, 758, 1035, 1494
Tru9I TTAA 5 cut(s) 131, 332, 758, 1035, 1494
TscAI CASTG 3 cut(s) 817, 1336, 1768
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 3 cut(s) 985, 1047, 1149
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 8 cut(s) 237, 287, 488, 647, 722, 783, 900, 1197
TspRI CASTG 3 cut(s) 817, 1336, 1768
Van91I CCANNNNNTGG 1 cut(s) 233
VpaK11BI GGWCC 3 cut(s) 286, 683, 1397
VspI ATTAAT 2 cut(s) 758, 1035
XapI RAATTY 5 cut(s) 376, 388, 1074, 1247, 1471
XceI RCATGY 2 cut(s) 213, 1144
XmiI GTMKAC 7 cut(s) 162, 253, 363, 564, 807, 1060, 1801
XmnI GAANNNNTTC 1 cut(s) 106
XspI CTAG 9 cut(s) 47, 327, 783, 909, 1008, 1242, 1263, 1347, 1455
ZrmI AGTACT 2 cut(s) 346, 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.