Rh7BG318800

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004332
Physical Location & Seq
Forward (+)
30936611 .. 30943406
6796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG318800.1

Sequence Viewer

Length: 1731 bp
ATGTGTACAAAATGCGATGATCGTTGCAGTTGCAGAGATGCTCAACTAGCTTCAGAGGAAAAAAAGAATGCTGAGGATTCAAGCAACTTTGTTTTTCCAAGAAGCTCTTCCCAGCTGTCAGCAATTAGTTTAATGTCTGAAAGTTCTGCACCTGATCTTGTATACAAGAGGAGGAAGTTACAAGAAAACTCTGAGACCATACTTTCAGCATGTGATGTGAAATACCCAAGAACTGGTGATTGCCTTTCGTGTATACATTCTGATACTCCTTCACTTGCTGGTAAGGACCAATATGTTCATTCTCAAAAAGGGGAACTGTCAGCAACTAGTTTAATGTCTGAAAGTACCGCACCTAATCTTGTATACAAGAGGAGGAATTTACTAGAAAATTCTGTCATATCAGCATGTGATGTGAAAAACCCGAGAACTGGTGATTGCCTTTCGTTTATACATTCTGATGCTCCTTCACTTGCTGGTAAGGATCAATATGTTCATTCTCAAAAAGGGGAACTGTCAGCGATTAGTATAATGTCTGAAAGTACTGCACCTAATCTTGTATACAAGAGGAAGAAGTTACGAGACCCGAGAACTGGTGATTGCCTTTCGTTTATACATTCTGATGCTCCTTCACTTGCTGGTAAGGATCAATATGTTCATTCTCAAAAAGGGGATCAGAATGGACCATGTTTATGCAATAGAGCATCTGCTGTTATAAAATCAAAGTCTTTTCATGGGTTTTCTGTTGATGAGGAATTAATTTCTAATGAAGCACCTAAAGCTAGTGTTCCAAAAGGTTTAGAGGTAGACAGTGTAAACGATAGTTGCTCGTCATCGAAGTCAAATATGGAGAACGTTTCCACCTCCAATAAGACTGAAGTAGATGAAGCCGCTGATTGCTCCTCTTCTAGTGCAATCGTTATGGAAGCTGTGGGAGATCTGTCTGAAAAGGATCTCTGCATCTCTATTCTCAGAACCCATGGGCTGCTCGGGGAAGTTCGGATAACTAGGAGCTGTGGTTCTGCTGATGACATTAATACCAGTAGCAGCAAGAGCTGTCGACGGTCATGCAAAATTTGTAATCGTTCAGAAACCGCTCTGAAAATGCTGATTTGTGATAATTGTGAAGAGGCATTTCACATGTCATGCTGCCAGCCACGAATAAAGAAGGTACCTATAGATGAATGGTTCTGTCATTCCTGCTTGAGAGAGAAACATACAATTCTAAAAGAGAGAGTGACTAGAAAATTTCCGAATATCACTAGTGTCATGAGTAGGAATGCGTCATCTAAGGATGAGGTAAATCCCATACTATTGATGCTGAGAGACACTGAGCCATATAGAACTAGTGTTCGGGTTGGCAAAGGTTTTCAAGCGGAAGTTGATGACTGGTCAGGTCCAATAAACAATGACGGCATTGGTGAACCGTTGGAATTACATCCTTCGGAGTATGCTAGACTGCATGAGTTGAATTCCAGCAAACCCTCAAAAATTAACTCTATAAGTAACTGGATCCAATGCCGAGAAGTTGTTGATCCTGAAAATGGAATAAGATGTGGAAAGTGGCGCAGGGCTCCTCTTTTTGAAGTTCAAACTAATGACTGGGAGTGCTTCTGCTCTGTTCTGTGGGATCCAAGCCATGCTGATTGTAATGTGCCTCAGGAATTGGAAACAGATCAAGTTCTAAAGCAACTGAAGTATGTTGAGACGGTATGTTTTAGTCACTTCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0019899 GO:0070063
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2 PHD

Protein Analysis

576

Amino Acids

63.9

Weight (kDa)

6.02

Isoelectric Point (pI)

50.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 356 - 400 8.6e-10 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 713
Acc65I GGTACC 1 cut(s) 1168
AccB1I GGYRCC 1 cut(s) 1168
AccB7I CCANNNNNTGG 1 cut(s) 233
AccBSI CCGCTC 1 cut(s) 1094
AccI GTMKAC 6 cut(s) 162, 253, 363, 558, 804, 1057
AciI CCGC 4 cut(s) 348, 888, 1092, 1373
AclI AACGTT 1 cut(s) 852
AclWI GGATC 9 cut(s) 489, 651, 678, 957, 1504, 1517, 1526, 1622, 1635
AcsI RAATTY 5 cut(s) 376, 388, 1071, 1244, 1468
AcuI CTGAAG 3 cut(s) 36, 894, 1712
AfaI GTAC 4 cut(s) 7, 346, 541, 1170
AfiI CCNNNNNNNGG 4 cut(s) 233, 428, 590, 1541
AflIII ACRYGT 1 cut(s) 1137
AgsI TTSAA 5 cut(s) 81, 1370, 1468, 1583, 1589
AhlI ACTAGT 3 cut(s) 326, 1259, 1343
AjuI GAANNNNNNNTTGG 2 cut(s) 91, 123
AloI GAACNNNNNNTCC 2 cut(s) 1000, 1032
AluBI AGCT 7 cut(s) 50, 105, 115, 779, 926, 1011, 1053
AluI AGCT 7 cut(s) 50, 105, 115, 779, 926, 1011, 1053
Alw26I GTCTC 4 cut(s) 188, 573, 1317, 1697
AlwI GGATC 9 cut(s) 489, 651, 678, 957, 1504, 1517, 1526, 1622, 1635
Ama87I CYCGRG 3 cut(s) 421, 583, 986
ApeKI GCWGC 3 cut(s) 982, 1044, 1146
ApoI RAATTY 5 cut(s) 376, 388, 1071, 1244, 1468
AseI ATTAAT 2 cut(s) 755, 1032
Asp700I GAANNNNTTC 1 cut(s) 106
Asp718I GGTACC 1 cut(s) 1168
AspLEI GCGC 1 cut(s) 1566
AspS9I GGNCC 3 cut(s) 286, 680, 1394
AsuHPI GGTGA 4 cut(s) 248, 443, 605, 1430
AvaI CYCGRG 3 cut(s) 421, 583, 986
AvaII GGWCC 3 cut(s) 286, 680, 1394
AxyI CCTNAGG 1 cut(s) 1656
BamHI GGATCC 2 cut(s) 1509, 1627
BanI GGYRCC 1 cut(s) 1168
BanII GRGCYC 1 cut(s) 1573
BbvCI CCTCAGC 1 cut(s) 72
BbvI GCAGC 3 cut(s) 969, 1056, 1133
BceAI ACGGC 1 cut(s) 1426
BcgI CGANNNNNNTGC 2 cut(s) 1047, 1081
BcoDI GTCTC 4 cut(s) 188, 573, 1317, 1697
BcuI ACTAGT 3 cut(s) 326, 1259, 1343
BfmI CTRYAG 1 cut(s) 1173
BglII AGATCT 1 cut(s) 934
BisI GCNGC 4 cut(s) 888, 983, 1045, 1147
BlsI GCNGC 4 cut(s) 889, 984, 1046, 1148
BmcAI AGTACT 1 cut(s) 541
Bme18I GGWCC 3 cut(s) 286, 680, 1394
BmeT110I CYCGRG 3 cut(s) 421, 583, 986
BmgT120I GGNCC 3 cut(s) 286, 680, 1394
BmiI GGNNCC 4 cut(s) 1170, 1511, 1572, 1629
BmrI ACTGGG 1 cut(s) 1609
BmsI GCATC 6 cut(s) 28, 448, 610, 710, 966, 1305
BmuI ACTGGG 1 cut(s) 1609
Bpu10I CCTNAGC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 1222
BsaI GGTCTC 2 cut(s) 188, 573
BsaJI CCNNGG 1 cut(s) 976
BsaXI ACNNNNNCTCC 2 cut(s) 1000, 1030
Bsc4I CCNNNNNNNGG 4 cut(s) 233, 428, 590, 1541
Bse1I ACTGG 7 cut(s) 238, 433, 595, 1038, 1391, 1511, 1604
Bse21I CCTNAGG 1 cut(s) 1656
BseDI CCNNGG 1 cut(s) 976
BseGI GGATG 2 cut(s) 1297, 1435
BseLI CCNNNNNNNGG 4 cut(s) 233, 428, 590, 1541
BseMII CTCAG 6 cut(s) 63, 183, 982, 1310, 1320, 1670
BseNI ACTGG 7 cut(s) 238, 433, 595, 1038, 1391, 1511, 1604
BseRI GAGGAG 4 cut(s) 184, 385, 889, 1563
BseXI GCAGC 3 cut(s) 969, 1056, 1133
BseYI CCCAGC 1 cut(s) 111
BsgI GTGCAG 2 cut(s) 132, 528
BshNI GGYRCC 1 cut(s) 1168
BsiHKCI CYCGRG 3 cut(s) 421, 583, 986
BslI CCNNNNNNNGG 4 cut(s) 233, 428, 590, 1541
BsmAI GTCTC 4 cut(s) 188, 573, 1317, 1697
BsmBI CGTCTC 1 cut(s) 1697
BsmI GAATGC 2 cut(s) 73, 1282
Bso31I GGTCTC 2 cut(s) 188, 573
BsoBI CYCGRG 3 cut(s) 421, 583, 986
Bsp1286I GDGCHC 1 cut(s) 1573
Bsp1407I TGTACA 1 cut(s) 5
Bsp19I CCATGG 1 cut(s) 976
BspACI CCGC 4 cut(s) 348, 888, 1092, 1373
BspCNI CTCAG 6 cut(s) 64, 184, 981, 1311, 1321, 1669
BspHI TCATGA 1 cut(s) 1266
BspLI GGNNCC 4 cut(s) 1170, 1511, 1572, 1629
BspPI GGATC 9 cut(s) 489, 651, 678, 957, 1504, 1517, 1526, 1622, 1635
BspQI GCTCTTC 1 cut(s) 112
BspT107I GGYRCC 1 cut(s) 1168
BspTNI GGTCTC 2 cut(s) 188, 573
BsrBI CCGCTC 1 cut(s) 1094
BsrGI TGTACA 1 cut(s) 5
BsrI ACTGG 7 cut(s) 238, 433, 595, 1038, 1391, 1511, 1604
BssECI CCNNGG 1 cut(s) 976
BssNAI GTATAC 4 cut(s) 163, 254, 364, 559
BssT1I CCWWGG 1 cut(s) 976
Bst1107I GTATAC 4 cut(s) 163, 254, 364, 559
Bst4CI ACNGT 6 cut(s) 318, 513, 809, 1062, 1425, 1708
Bst6I CTCTTC 3 cut(s) 112, 907, 1119
BstAUI TGTACA 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 1151
BstDEI CTNAG 7 cut(s) 72, 192, 968, 1287, 1319, 1329, 1656
BstDSI CCRYGG 1 cut(s) 976
BstF5I GGATG 2 cut(s) 1297, 1435
BstHHI GCGC 1 cut(s) 1566
BstMAI GTCTC 4 cut(s) 188, 573, 1317, 1697
BstMWI GCNNNNNNNGC 3 cut(s) 47, 776, 1050
BstNSI RCATGY 3 cut(s) 213, 408, 1141
BstSFI CTRYAG 1 cut(s) 1173
BstV1I GCAGC 3 cut(s) 969, 1056, 1133
BstX2I RGATCY 4 cut(s) 934, 949, 1509, 1627
BstYI RGATCY 4 cut(s) 934, 949, 1509, 1627
BstZ17I GTATAC 4 cut(s) 163, 254, 364, 559
Bsu36I CCTNAGG 1 cut(s) 1656
BtgI CCRYGG 1 cut(s) 976
BtgZI GCGATG 1 cut(s) 30
BtsCI GGATG 2 cut(s) 1297, 1435
BtsIMutI CAGTG 2 cut(s) 814, 1326
Cac8I GCNNGC 1 cut(s) 1151
CciI TCATGA 1 cut(s) 1266
CfoI GCGC 1 cut(s) 1566
Cfr13I GGNCC 3 cut(s) 286, 680, 1394
CseI GACGC 1 cut(s) 1269
Csp6I GTAC 4 cut(s) 6, 345, 540, 1169
CviQI GTAC 4 cut(s) 6, 345, 540, 1169
DdeI CTNAG 7 cut(s) 72, 192, 968, 1287, 1319, 1329, 1656
Eam1104I CTCTTC 3 cut(s) 112, 907, 1119
EarI CTCTTC 3 cut(s) 112, 907, 1119
Eco130I CCWWGG 1 cut(s) 976
Eco24I GRGCYC 1 cut(s) 1573
Eco31I GGTCTC 2 cut(s) 188, 573
Eco47I GGWCC 3 cut(s) 286, 680, 1394
Eco57I CTGAAG 3 cut(s) 36, 894, 1712
Eco81I CCTNAGG 1 cut(s) 1656
Eco88I CYCGRG 3 cut(s) 421, 583, 986
EcoRI GAATTC 1 cut(s) 1468
EcoT14I CCWWGG 1 cut(s) 976
EcoT38I GRGCYC 1 cut(s) 1573
ErhI CCWWGG 1 cut(s) 976
Esp3I CGTCTC 1 cut(s) 1697
FalI AAGNNNNNCTT 2 cut(s) 91, 123
FblI GTMKAC 6 cut(s) 162, 253, 363, 558, 804, 1057
Fnu4HI GCNGC 4 cut(s) 888, 983, 1045, 1147
FokI GGATG 2 cut(s) 1304, 1422
FriOI GRGCYC 1 cut(s) 1573
Fsp4HI GCNGC 4 cut(s) 888, 983, 1045, 1147
GlaI GCGC 1 cut(s) 1565
GluI GCNGC 4 cut(s) 888, 983, 1045, 1147
GsaI CCCAGC 1 cut(s) 115
HgaI GACGC 1 cut(s) 1269
HhaI GCGC 1 cut(s) 1566
Hin6I GCGC 1 cut(s) 1564
HinP1I GCGC 1 cut(s) 1564
HincII GTYRAC 1 cut(s) 1058
HindII GTYRAC 1 cut(s) 1058
HinfI GANTC 1 cut(s) 77
HphI GGTGA 4 cut(s) 248, 443, 605, 1430
Hpy166II GTNNAC 9 cut(s) 6, 163, 254, 364, 559, 805, 814, 1058, 1421
Hpy188III TCNNGA 3 cut(s) 1267, 1535, 1658
Hpy8I GTNNAC 9 cut(s) 6, 163, 254, 364, 559, 805, 814, 1058, 1421
Hpy99I CGWCG 1 cut(s) 1062
HpyAV CCTTC 5 cut(s) 279, 474, 636, 1159, 1449
HpyCH4III ACNGT 6 cut(s) 318, 513, 809, 1062, 1425, 1708
HpyCH4IV ACGT 1 cut(s) 852
HpyCH4V TGCA 9 cut(s) 27, 33, 149, 545, 693, 911, 957, 1068, 1459
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 776, 1050
HpyF3I CTNAG 7 cut(s) 72, 192, 968, 1287, 1319, 1329, 1656
HpySE526I ACGT 1 cut(s) 852
HspAI GCGC 1 cut(s) 1564
KpnI GGTACC 1 cut(s) 1172
LguI GCTCTTC 1 cut(s) 112
LmnI GCTCC 5 cut(s) 466, 628, 902, 1008, 1576
Lsp1109I GCAGC 3 cut(s) 969, 1056, 1133
LweI GCATC 6 cut(s) 28, 448, 610, 710, 966, 1305
MaeII ACGT 1 cut(s) 852
MaeIII GTNAC 5 cut(s) 177, 573, 1234, 1502, 1718
MbiI CCGCTC 1 cut(s) 1094
MboII GAAGA 4 cut(s) 99, 580, 894, 1136
MflI RGATCY 4 cut(s) 934, 949, 1509, 1627
MhlI GDGCHC 1 cut(s) 1573
MmeI TCCRAC 1 cut(s) 1407
MroXI GAANNNNTTC 1 cut(s) 106
MseI TTAA 5 cut(s) 131, 332, 755, 1032, 1491
MslI CAYNNNNRTG 3 cut(s) 456, 618, 688
MspA1I CMGCKG 2 cut(s) 115, 890
Mva1269I GAATGC 2 cut(s) 73, 1282
MwoI GCNNNNNNNGC 3 cut(s) 47, 776, 1050
NcoI CCATGG 1 cut(s) 976
NlaIV GGNNCC 4 cut(s) 1170, 1511, 1572, 1629
NmeAIII GCCGAG 1 cut(s) 1544
NmuCI GTSAC 2 cut(s) 1234, 1718
NspI RCATGY 3 cut(s) 213, 408, 1141
PagI TCATGA 1 cut(s) 1266
PciI ACATGT 1 cut(s) 1137
PciSI GCTCTTC 1 cut(s) 112
PctI GAATGC 2 cut(s) 73, 1282
PdmI GAANNNNTTC 1 cut(s) 106
PfeI GAWTC 1 cut(s) 77
PflMI CCANNNNNTGG 1 cut(s) 233
PkrI GCNGC 4 cut(s) 889, 984, 1046, 1148
PscI ACATGT 1 cut(s) 1137
PshBI ATTAAT 2 cut(s) 755, 1032
PsiI TTATAA 1 cut(s) 713
Psp1406I AACGTT 1 cut(s) 852
PspFI CCCAGC 1 cut(s) 111
PspN4I GGNNCC 4 cut(s) 1170, 1511, 1572, 1629
PspPI GGNCC 3 cut(s) 286, 680, 1394
PsuI RGATCY 4 cut(s) 934, 949, 1509, 1627
PvuII CAGCTG 1 cut(s) 115
RsaI GTAC 4 cut(s) 7, 346, 541, 1170
RsaNI GTAC 4 cut(s) 6, 345, 540, 1169
RseI CAYNNNNRTG 3 cut(s) 456, 618, 688
SalI GTCGAC 1 cut(s) 1056
SapI GCTCTTC 1 cut(s) 112
SaqAI TTAA 5 cut(s) 131, 332, 755, 1032, 1491
SatI GCNGC 4 cut(s) 888, 983, 1045, 1147
Sau96I GGNCC 3 cut(s) 286, 680, 1394
ScaI AGTACT 1 cut(s) 541
SduI GDGCHC 1 cut(s) 1573
SfaNI GCATC 6 cut(s) 28, 448, 610, 710, 966, 1305
SfcI CTRYAG 1 cut(s) 1173
SinI GGWCC 3 cut(s) 286, 680, 1394
SmiMI CAYNNNNRTG 3 cut(s) 456, 618, 688
SmlI CTYRAG 1 cut(s) 1201
SmoI CTYRAG 1 cut(s) 1201
SpeI ACTAGT 3 cut(s) 326, 1259, 1343
SsiI CCGC 4 cut(s) 348, 888, 1092, 1373
StyI CCWWGG 1 cut(s) 976
TaaI ACNGT 6 cut(s) 318, 513, 809, 1062, 1425, 1708
TaiI ACGT 1 cut(s) 855
TaqI TCGA 2 cut(s) 833, 1057
TatI WGTACW 2 cut(s) 5, 539
TauI GCSGC 1 cut(s) 890
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 5 cut(s) 131, 332, 755, 1032, 1491
Tru9I TTAA 5 cut(s) 131, 332, 755, 1032, 1491
TscAI CASTG 2 cut(s) 814, 1333
TseFI GTSAC 2 cut(s) 1234, 1718
TseI GCWGC 3 cut(s) 982, 1044, 1146
Tsp45I GTSAC 2 cut(s) 1234, 1718
TspDTI ATGAA 7 cut(s) 287, 482, 644, 719, 780, 897, 1194
TspRI CASTG 2 cut(s) 814, 1333
Van91I CCANNNNNTGG 1 cut(s) 233
VpaK11BI GGWCC 3 cut(s) 286, 680, 1394
VspI ATTAAT 2 cut(s) 755, 1032
XapI RAATTY 5 cut(s) 376, 388, 1071, 1244, 1468
XceI RCATGY 3 cut(s) 213, 408, 1141
XmiI GTMKAC 6 cut(s) 162, 253, 363, 558, 804, 1057
XmnI GAANNNNTTC 1 cut(s) 106
ZrmI AGTACT 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.