Rroxscaffold_3G00240010

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004332
Physical Location & Seq
Reverse (-)
31377812 .. 31383222
5411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00240010.1

Sequence Viewer

Length: 1791 bp
ATGTTGATAGAAACTTTCCTTTCCAGTTCAATTGAAGCTGCTCTATTTTGTCTATCTAACTTTGGGTTACAAGATGTCTTATGTGATTGGATGCCTGGTGCTGAAACTTGGCAGATGTGTACAAAATGCGATGATCGTTGCAGTTGCAGAGATGCTCAACTAGCTTCAGAGGACAAAAAGAATGCTGTGGATTCAAGCAACTTAGTTTTTCCAAGAAGCTCTTCCCAGCTGTCAGCAATTAGTTTAATGTCTGAAAGTTCTGCACCTGATCTTGTATACAAGAGGAGGAAGTTACAAGAAAACTCTGAGACCATACTTTCGGCATGTGATGTGAAATACCCAAGAACTGGTGATTGCCTTTCGTGTATACATTCTGATATTCCTTCACTTGCTGGTAAGGACCAATATGTTCATTCTCAAAAAGGGGAACTGTCAGCAACTAGTTTAATGTCTGAAAGTACTGCACCTAATCTTGTATACAAGAGGAGGAATTTACAAGAAAATTCTGTCACCATACTATCAGCATGTGATGTGAAAAACCCGAGAACTGGTGATTGCCTTTCGTTTATACATTCTGATGCTCCTTCACTTGCTGGTAAGGATCAATATGTTCATTCTCAAAAAGGGGAACTGTCAGCGATTAGTATAATGTCTGAAAGTACTGCACCTAATCTTGTATACAAGAGGAAGAAGTTACGAGACCCGAGAACTGGTGATTGCCTTTCGTTTATACATTCTGATGCTCCTTCACTTGCTGGTAAGGCATATGTTCATTCTCAAAAAGGGGATCAGAATGGACCATGTTTGTGCAATAGAGCATCTGCTGTTATAAAATCAAAGTCTTTTCATGGGTTTTCTGTTGATGAGGAATTAATTTCTAATGAAGCACCTAAAGCTAGTGTTCCAAAGGGTTTAGAGGTAGACAGTGTAAACGATAGTTGCTCGTCATCAAAGTCAAATATGGAGAACGTTTCCACCTCCAATAAGACTGAAGTAGATGAAACCGCTGATTGCTCCTCTTCTAGTGCAATCGTTATGGAAGCTGTGGGAGATCTGTCTGAAAAGGATCTCTGCATCTCTATTCTCAGAACCCATGGGCTGCTCGGGGAAGTTCGGATAACTAGGAGCTGTGGTTCTGCTGATGACATTAATACCAGTAGCAGTAAGAGCTGTCGACGGTCATGCAAAATTTGTAATCGTTCAGAAACCGCTCTGAAAATGCTGATTTGTGATAATTGTGAAGAGGCATTTCACATGTCATGCTGCCAGCCACGAATGAAGAAGGATGAGGTAAATCCCATACTATTGATGCTGAGAGACACTGAGCCATATAGAACTAGTGTTCGGGTTGGCAAAGGTTTTCAAGCGGAAGTTGATGACTGGTCAGGTCCAATAAACAATGACAGCATTGGCGAACCGTTGGAATTACATCCTTCGGAGTATGCTAGACTGCATGAGTTGAATTCCAGCAAACCCTCAAAAATTAACTCTATAAGTAACTGGATCCAATGCCGAGAAGTTGTTGATCCTGAAAATGGAATAAGATGTGGAAAGTGGCGCAGGGCTCCTCTTTTGAAGTCCAAACTAATGACTGGGAGTGCTTCTGCTCTGTTCTGTGGGATCCAAGCCATGCTGATTGAATTGGAAACAGATCAAGTTCTAAAGCAACTGAAGTATGTTGAGACGCTAAGGCCCCGGCTATCTGCTCAACAGCATAATTTGGGTCGCGCCAACAGCACTGGTGATTTACAAAACCGCAGAATAGATACAAAAAGTATACAAACTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0019899 GO:0070063
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2 PHD

Protein Analysis

596

Amino Acids

65.49

Weight (kDa)

6.23

Isoelectric Point (pI)

50.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 395 - 431 1.5e-07 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 830
AccB7I CCANNNNNTGG 1 cut(s) 347
AccBSI CCGCTC 1 cut(s) 1211
AccI GTMKAC 7 cut(s) 276, 367, 477, 678, 921, 1174, 1777
AccII CGCG 1 cut(s) 1728
AciI CCGC 4 cut(s) 1005, 1209, 1367, 1756
AclI AACGTT 1 cut(s) 969
AclWI GGATC 8 cut(s) 609, 795, 1074, 1498, 1511, 1520, 1615, 1628
AcsI RAATTY 4 cut(s) 490, 502, 1188, 1462
AcuI CTGAAG 3 cut(s) 150, 1011, 1691
AfaI GTAC 3 cut(s) 121, 460, 661
AfiI CCNNNNNNNGG 4 cut(s) 347, 548, 710, 1535
AflIII ACRYGT 1 cut(s) 1254
AgsI TTSAA 7 cut(s) 30, 35, 195, 1364, 1462, 1576, 1640
AhlI ACTAGT 2 cut(s) 440, 1337
AjnI CCWGG 1 cut(s) 94
AjuI GAANNNNNNNTTGG 2 cut(s) 205, 237
AloI GAACNNNNNNTCC 2 cut(s) 1117, 1149
AluBI AGCT 8 cut(s) 38, 164, 219, 229, 896, 1043, 1128, 1170
AluI AGCT 8 cut(s) 38, 164, 219, 229, 896, 1043, 1128, 1170
Alw26I GTCTC 4 cut(s) 302, 693, 1311, 1676
AlwI GGATC 8 cut(s) 609, 795, 1074, 1498, 1511, 1520, 1615, 1628
Ama87I CYCGRG 3 cut(s) 541, 703, 1103
AoxI GGCC 1 cut(s) 1691
ApeKI GCWGC 3 cut(s) 38, 1099, 1263
ApoI RAATTY 4 cut(s) 490, 502, 1188, 1462
ArsI GACNNNNNNTTYG 2 cut(s) 301, 333
AseI ATTAAT 2 cut(s) 872, 1149
Asp700I GAANNNNTTC 1 cut(s) 220
AspLEI GCGC 2 cut(s) 1560, 1730
AspS9I GGNCC 4 cut(s) 400, 797, 1388, 1692
AsuC2I CCSGG 1 cut(s) 1696
AsuHPI GGTGA 5 cut(s) 362, 502, 563, 725, 1754
AvaI CYCGRG 3 cut(s) 541, 703, 1103
AvaII GGWCC 3 cut(s) 400, 797, 1388
BamHI GGATCC 2 cut(s) 1503, 1620
BanII GRGCYC 1 cut(s) 1567
BbvI GCAGC 3 cut(s) 25, 1086, 1250
BcgI CGANNNNNNTGC 2 cut(s) 1164, 1198
BciT130I CCWGG 1 cut(s) 96
BcnI CCSGG 1 cut(s) 1696
BcoDI GTCTC 4 cut(s) 302, 693, 1311, 1676
BcuI ACTAGT 2 cut(s) 440, 1337
BfaI CTAG 7 cut(s) 161, 441, 897, 1023, 1122, 1338, 1446
BglII AGATCT 1 cut(s) 1051
BisI GCNGC 3 cut(s) 39, 1100, 1264
BlsI GCNGC 3 cut(s) 40, 1101, 1265
BmcAI AGTACT 2 cut(s) 460, 661
Bme1390I CCNGG 2 cut(s) 96, 1696
Bme18I GGWCC 3 cut(s) 400, 797, 1388
BmeT110I CYCGRG 3 cut(s) 541, 703, 1103
BmgT120I GGNCC 4 cut(s) 400, 797, 1388, 1692
BmiI GGNNCC 4 cut(s) 1505, 1566, 1622, 1694
BmrFI CCNGG 2 cut(s) 96, 1696
BmrI ACTGGG 1 cut(s) 1602
BmsI GCATC 7 cut(s) 81, 142, 568, 730, 827, 1083, 1299
BmuI ACTGGG 1 cut(s) 1602
Bpu10I CCTNAGC 1 cut(s) 1688
BpuMI CCSGG 1 cut(s) 1696
BsaI GGTCTC 2 cut(s) 302, 693
BsaJI CCNNGG 2 cut(s) 1093, 1694
BsaXI ACNNNNNCTCC 2 cut(s) 1117, 1147
Bsc4I CCNNNNNNNGG 4 cut(s) 347, 548, 710, 1535
Bse1I ACTGG 9 cut(s) 24, 352, 553, 715, 1155, 1385, 1505, 1597, 1744
BseBI CCWGG 1 cut(s) 96
BseDI CCNNGG 2 cut(s) 1093, 1694
BseGI GGATG 3 cut(s) 96, 1291, 1429
BseLI CCNNNNNNNGG 4 cut(s) 347, 548, 710, 1535
BseMII CTCAG 4 cut(s) 297, 1099, 1304, 1314
BseNI ACTGG 9 cut(s) 24, 352, 553, 715, 1155, 1385, 1505, 1597, 1744
BseRI GAGGAG 4 cut(s) 298, 499, 1006, 1557
BseXI GCAGC 3 cut(s) 25, 1086, 1250
BseYI CCCAGC 1 cut(s) 225
BsgI GTGCAG 3 cut(s) 246, 447, 648
Bsh1236I CGCG 1 cut(s) 1728
BshFI GGCC 1 cut(s) 1693
BsiHKCI CYCGRG 3 cut(s) 541, 703, 1103
BsiSI CCGG 1 cut(s) 1696
BslI CCNNNNNNNGG 4 cut(s) 347, 548, 710, 1535
BsmAI GTCTC 4 cut(s) 302, 693, 1311, 1676
BsmBI CGTCTC 1 cut(s) 1676
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 1 cut(s) 1693
Bso31I GGTCTC 2 cut(s) 302, 693
BsoBI CYCGRG 3 cut(s) 541, 703, 1103
Bsp1286I GDGCHC 1 cut(s) 1567
Bsp1407I TGTACA 1 cut(s) 119
Bsp19I CCATGG 1 cut(s) 1093
BspACI CCGC 4 cut(s) 1005, 1209, 1367, 1756
BspANI GGCC 1 cut(s) 1693
BspCNI CTCAG 4 cut(s) 298, 1098, 1305, 1315
BspFNI CGCG 1 cut(s) 1728
BspLI GGNNCC 4 cut(s) 1505, 1566, 1622, 1694
BspPI GGATC 8 cut(s) 609, 795, 1074, 1498, 1511, 1520, 1615, 1628
BspQI GCTCTTC 1 cut(s) 226
BspTNI GGTCTC 2 cut(s) 302, 693
BsrBI CCGCTC 1 cut(s) 1211
BsrGI TGTACA 1 cut(s) 119
BsrI ACTGG 9 cut(s) 24, 352, 553, 715, 1155, 1385, 1505, 1597, 1744
BssECI CCNNGG 2 cut(s) 1093, 1694
BssNAI GTATAC 5 cut(s) 277, 368, 478, 679, 1778
BssT1I CCWWGG 1 cut(s) 1093
Bst1107I GTATAC 5 cut(s) 277, 368, 478, 679, 1778
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 5 cut(s) 432, 633, 926, 1179, 1419
Bst6I CTCTTC 3 cut(s) 226, 1024, 1236
BstAUI TGTACA 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 1268
BstDEI CTNAG 6 cut(s) 202, 306, 1085, 1313, 1323, 1688
BstDSI CCRYGG 1 cut(s) 1093
BstF5I GGATG 3 cut(s) 96, 1291, 1429
BstFNI CGCG 1 cut(s) 1728
BstHHI GCGC 2 cut(s) 1560, 1730
BstMAI GTCTC 4 cut(s) 302, 693, 1311, 1676
BstMWI GCNNNNNNNGC 5 cut(s) 161, 761, 893, 1167, 1734
BstNI CCWGG 1 cut(s) 96
BstNSI RCATGY 3 cut(s) 327, 528, 1258
BstSCI CCNGG 2 cut(s) 94, 1694
BstUI CGCG 1 cut(s) 1728
BstV1I GCAGC 3 cut(s) 25, 1086, 1250
BstX2I RGATCY 4 cut(s) 1051, 1066, 1503, 1620
BstYI RGATCY 4 cut(s) 1051, 1066, 1503, 1620
BstZ17I GTATAC 5 cut(s) 277, 368, 478, 679, 1778
BsuRI GGCC 1 cut(s) 1693
BtgI CCRYGG 1 cut(s) 1093
BtgZI GCGATG 1 cut(s) 144
BtsCI GGATG 3 cut(s) 96, 1291, 1429
BtsIMutI CAGTG 3 cut(s) 931, 1320, 1737
Cac8I GCNNGC 1 cut(s) 1268
CfoI GCGC 2 cut(s) 1560, 1730
Cfr13I GGNCC 4 cut(s) 400, 797, 1388, 1692
CseI GACGC 1 cut(s) 1693
Csp6I GTAC 3 cut(s) 120, 459, 660
CviQI GTAC 3 cut(s) 120, 459, 660
DdeI CTNAG 6 cut(s) 202, 306, 1085, 1313, 1323, 1688
Eam1104I CTCTTC 3 cut(s) 226, 1024, 1236
EarI CTCTTC 3 cut(s) 226, 1024, 1236
Eco130I CCWWGG 1 cut(s) 1093
Eco24I GRGCYC 1 cut(s) 1567
Eco31I GGTCTC 2 cut(s) 302, 693
Eco47I GGWCC 3 cut(s) 400, 797, 1388
Eco57I CTGAAG 3 cut(s) 150, 1011, 1691
Eco88I CYCGRG 3 cut(s) 541, 703, 1103
EcoO109I RGGNCCY 1 cut(s) 1692
EcoRI GAATTC 1 cut(s) 1462
EcoRII CCWGG 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 1093
EcoT38I GRGCYC 1 cut(s) 1567
ErhI CCWWGG 1 cut(s) 1093
Esp3I CGTCTC 1 cut(s) 1676
FalI AAGNNNNNCTT 2 cut(s) 205, 237
FauNDI CATATG 1 cut(s) 766
FblI GTMKAC 7 cut(s) 276, 367, 477, 678, 921, 1174, 1777
Fnu4HI GCNGC 3 cut(s) 39, 1100, 1264
FokI GGATG 3 cut(s) 103, 1298, 1416
FriOI GRGCYC 1 cut(s) 1567
Fsp4HI GCNGC 3 cut(s) 39, 1100, 1264
FspBI CTAG 7 cut(s) 161, 441, 897, 1023, 1122, 1338, 1446
GlaI GCGC 2 cut(s) 1559, 1729
GluI GCNGC 3 cut(s) 39, 1100, 1264
GsaI CCCAGC 1 cut(s) 229
HaeIII GGCC 1 cut(s) 1693
HapII CCGG 1 cut(s) 1696
HgaI GACGC 1 cut(s) 1693
HhaI GCGC 2 cut(s) 1560, 1730
Hin6I GCGC 2 cut(s) 1558, 1728
HinP1I GCGC 2 cut(s) 1558, 1728
HincII GTYRAC 1 cut(s) 1175
HindII GTYRAC 1 cut(s) 1175
HinfI GANTC 1 cut(s) 191
HpaII CCGG 1 cut(s) 1696
HphI GGTGA 5 cut(s) 362, 502, 563, 725, 1754
Hpy166II GTNNAC 9 cut(s) 120, 277, 368, 478, 679, 922, 931, 1175, 1778
Hpy188III TCNNGA 1 cut(s) 1529
Hpy8I GTNNAC 9 cut(s) 120, 277, 368, 478, 679, 922, 931, 1175, 1778
Hpy99I CGWCG 1 cut(s) 1179
HpyAV CCTTC 5 cut(s) 393, 594, 756, 1276, 1443
HpyCH4III ACNGT 5 cut(s) 432, 633, 926, 1179, 1419
HpyCH4IV ACGT 1 cut(s) 969
HpyF10VI GCNNNNNNNGC 5 cut(s) 161, 761, 893, 1167, 1734
HpyF3I CTNAG 6 cut(s) 202, 306, 1085, 1313, 1323, 1688
HpySE526I ACGT 1 cut(s) 969
HspAI GCGC 2 cut(s) 1558, 1728
LguI GCTCTTC 1 cut(s) 226
LmnI GCTCC 5 cut(s) 586, 748, 1019, 1125, 1570
Lsp1109I GCAGC 3 cut(s) 25, 1086, 1250
LweI GCATC 7 cut(s) 81, 142, 568, 730, 827, 1083, 1299
MaeI CTAG 7 cut(s) 161, 441, 897, 1023, 1122, 1338, 1446
MaeII ACGT 1 cut(s) 969
MaeIII GTNAC 5 cut(s) 66, 291, 508, 693, 1496
MbiI CCGCTC 1 cut(s) 1211
MboII GAAGA 5 cut(s) 213, 700, 1011, 1253, 1291
MfeI CAATTG 1 cut(s) 30
MflI RGATCY 4 cut(s) 1051, 1066, 1503, 1620
MhlI GDGCHC 1 cut(s) 1567
MmeI TCCRAC 1 cut(s) 1401
MroXI GAANNNNTTC 1 cut(s) 220
MseI TTAA 5 cut(s) 245, 446, 872, 1149, 1485
MslI CAYNNNNRTG 3 cut(s) 576, 738, 805
MspA1I CMGCKG 2 cut(s) 229, 1007
MspI CCGG 1 cut(s) 1696
MspR9I CCNGG 2 cut(s) 96, 1696
MunI CAATTG 1 cut(s) 30
Mva1269I GAATGC 1 cut(s) 187
MvaI CCWGG 1 cut(s) 96
MvnI CGCG 1 cut(s) 1728
MwoI GCNNNNNNNGC 5 cut(s) 161, 761, 893, 1167, 1734
NciI CCSGG 1 cut(s) 1696
NcoI CCATGG 1 cut(s) 1093
NdeI CATATG 1 cut(s) 766
NlaIV GGNNCC 4 cut(s) 1505, 1566, 1622, 1694
NmeAIII GCCGAG 1 cut(s) 1538
NmuCI GTSAC 1 cut(s) 508
NspI RCATGY 3 cut(s) 327, 528, 1258
PciI ACATGT 1 cut(s) 1254
PciSI GCTCTTC 1 cut(s) 226
PctI GAATGC 1 cut(s) 187
PdmI GAANNNNTTC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 191
PflMI CCANNNNNTGG 1 cut(s) 347
PkrI GCNGC 3 cut(s) 40, 1101, 1265
PscI ACATGT 1 cut(s) 1254
PshBI ATTAAT 2 cut(s) 872, 1149
PsiI TTATAA 1 cut(s) 830
Psp1406I AACGTT 1 cut(s) 969
Psp6I CCWGG 1 cut(s) 94
PspFI CCCAGC 1 cut(s) 225
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 4 cut(s) 1505, 1566, 1622, 1694
PspPI GGNCC 4 cut(s) 400, 797, 1388, 1692
PsuI RGATCY 4 cut(s) 1051, 1066, 1503, 1620
PvuII CAGCTG 1 cut(s) 229
RsaI GTAC 3 cut(s) 121, 460, 661
RsaNI GTAC 3 cut(s) 120, 459, 660
RseI CAYNNNNRTG 3 cut(s) 576, 738, 805
SalI GTCGAC 1 cut(s) 1173
SapI GCTCTTC 1 cut(s) 226
SaqAI TTAA 5 cut(s) 245, 446, 872, 1149, 1485
SatI GCNGC 3 cut(s) 39, 1100, 1264
Sau96I GGNCC 4 cut(s) 400, 797, 1388, 1692
ScaI AGTACT 2 cut(s) 460, 661
ScrFI CCNGG 2 cut(s) 96, 1696
SduI GDGCHC 1 cut(s) 1567
SfaNI GCATC 7 cut(s) 81, 142, 568, 730, 827, 1083, 1299
SinI GGWCC 3 cut(s) 400, 797, 1388
SmiMI CAYNNNNRTG 3 cut(s) 576, 738, 805
SpeI ACTAGT 2 cut(s) 440, 1337
SsiI CCGC 4 cut(s) 1005, 1209, 1367, 1756
SspMI CTAG 7 cut(s) 161, 441, 897, 1023, 1122, 1338, 1446
StyD4I CCNGG 2 cut(s) 94, 1694
StyI CCWWGG 1 cut(s) 1093
TaaI ACNGT 5 cut(s) 432, 633, 926, 1179, 1419
TaiI ACGT 1 cut(s) 972
TaqI TCGA 1 cut(s) 1174
TatI WGTACW 3 cut(s) 119, 458, 659
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 5 cut(s) 245, 446, 872, 1149, 1485
Tru9I TTAA 5 cut(s) 245, 446, 872, 1149, 1485
TscAI CASTG 3 cut(s) 931, 1327, 1744
TseFI GTSAC 1 cut(s) 508
TseI GCWGC 3 cut(s) 38, 1099, 1263
Tsp45I GTSAC 1 cut(s) 508
TspDTI ATGAA 7 cut(s) 401, 602, 761, 836, 897, 1014, 1292
TspRI CASTG 3 cut(s) 931, 1327, 1744
Van91I CCANNNNNTGG 1 cut(s) 347
VpaK11BI GGWCC 3 cut(s) 400, 797, 1388
VspI ATTAAT 2 cut(s) 872, 1149
XapI RAATTY 4 cut(s) 490, 502, 1188, 1462
XceI RCATGY 3 cut(s) 327, 528, 1258
XmiI GTMKAC 7 cut(s) 276, 367, 477, 678, 921, 1174, 1777
XmnI GAANNNNTTC 1 cut(s) 220
XspI CTAG 7 cut(s) 161, 441, 897, 1023, 1122, 1338, 1446
ZrmI AGTACT 2 cut(s) 460, 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.