Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004332

Physical Location & Seq

Genomic Coordinates Forward (+)

18885226 .. 18888689

Gene Structure 3464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g20830.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGTCAGAAAGTTCTGCACCTAATCTCGTTTATAAACGGAGGAAGTTACAAGGAAACCGTGTCACCGTGTTTCCAGGAGAGCGAGAAAACACTATAAGTGGTGATTTTTTTTCTTTTCTAAATTCTGAAGCTTCTACAGTTGCTGCTAAGGAAGAACTTGTATCTCAATTACACCATGAAACTGAAGCTACTCGAGCTCATTCTGTAGCTCCTCGTTTATGCAAGAGAGTTGGTCATGTTTTAAATTCAGAATCTTGTAATGGATGTTCTGCTGGTGAGGAATTAATTTTCAATGAAGCACCTAAAAATAACGTGCAAAAACTTTTAGAGGTAAGCAGCGTGAATGATAGTTGCTCATCATCAAAGTCAAATATGGAGCATGTTTCAACTTCCGCAAAGACTGAAGTAGATGAAACAGCTGAGTGCTCCTCTTCTAGTGCAATAGTTATGGAGGCTGTGGGAGACCTGTCTGAAAGGGATCTATGCATCTCTATTCTTAGAAGCCATGGACTGCTTGGGGATTCTCAGGTTACCATGATCGGTGGTTCTGCTGAAGACACTGACACCATTAGCGGTGAAATCCATCGCCGGTCATGCAAAATTTGTAGTCGTTCTGGAACCACTTTGAAAATGCTAATTTGTGATAATTGTGAAGAGGCATTTCACATGTCATGCTGCCACTCCCGTATGAAGAAACCACCTATTGATGAATGGTTCTGTCATTCTTGTTTGAAAAAGAAACATAAGATTTTACAGGAGAAAGTGACATCGCCCAATATCACGAGTGTCATGAGTAGGGAAGCATCATCCAAGGGCCAAATGAATCCCATAATCTTAATGTTGAGAGACATTGAGCCGTATACAACTAGTGTTCGGGTTGGTAAAGGGTTTCAAGCGGAAGTTCCTGAGTGGTCTGGCCCAACAAATGGGGTAAACGGTGATATCAGTGGCATTGGTGAACCTTTGGAACTAGATTCGTCGGAGTATGCTAGATTGCATGGGCTGAACTGCAATAAACCTTCTAGACATAGCTCTATAGGTAATTGGCTTCAATGTCGAGAAGTTGTAGATCGCACAAATGGAACTATATGTGGAAAATGGCGCAGGGCTCCTCTTTTTGAAGTCCAAACTAATGACTGGGAGTGCTTCTGCTCTATCCTTTGGGATCCAAGCCATGCTGATTGTAATGTGCCTCAGGAACTGGAAACAGATCAAGTTCTAAAGCAACTGAAGTATATTGAGACGCTGAGGCCGCGGTTATCTGCTAAACAGCATACTTTGGATGGAACCAAGAGTGCCGGTGAATTGAAAAAGCCCATAGTAGGTACAAAAAGTATACAAACTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0019899 GO:0070063

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELM2 PHD

Protein Analysis

450

Amino Acids

49.55

Weight (kDa)

6.23

Isoelectric Point (pI)

50.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19260 AT2G19260
fragaria_vesca	FvH4_5g27730 FvH4_5g27730 FvH4_5g27730 FvH4_5g27730 FvH4_5g27730 FvH4_5g27730 FvH4_5g27730 FvH4_5g27730 FvH4_5g27730 FvH4_5g27730 FvH4_5g27730 FvH4_5g27730 FvH4_5g27730
malus_domestica	MD13G1241700.v1.1 MD16G1248600.v1.1
prunus_persica	Prupe.1G075400_v2.0.a1
pyrus_communis	pycom13g21360 pycom16g20830
rosa_chinensis	RchiOBHm_Chr7g0219501
rosa_laevigata	RLG00000002287
rosa_multiflora	Rmu_sc0003047.1_g000014
rosa_roxburghii	Rroxscaffold_3G00240010
rosa_rugosa	Rorug07G0185600 Rorug07G0185700 Rorug07G0185700
rosa_samantha	Rh7AG328300 Rh7BG318800 Rh7CG345700 Rh7DG324700
rosa_wichuraiana	Rw7G027740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	33
AccB7I	CCANNNNNTGG	1 cut(s)	926
AccI	GTMKAC	2 cut(s)	860, 1336
AccII	CGCG	1 cut(s)	1255
AciI	CCGC	5 cut(s)	393, 573, 896, 1253, 1255
AclWI	GGATC	3 cut(s)	486, 1160, 1173
AcsI	RAATTY	3 cut(s)	121, 244, 600
AcuI	CTGAAG	5 cut(s)	147, 204, 423, 573, 1250
AfaI	GTAC	1 cut(s)	1327
AfiI	CCNNNNNNNGG	2 cut(s)	926, 1322
AflIII	ACRYGT	1 cut(s)	666
AgsI	TTSAA	8 cut(s)	292, 387, 628, 733, 893, 1052, 1121, 1309
AhlI	ACTAGT	1 cut(s)	866
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	6 cut(s)	131, 188, 197, 209, 419, 1032
AluI	AGCT	6 cut(s)	131, 188, 197, 209, 419, 1032
Alw21I	GWGCWC	2 cut(s)	199, 428
Alw26I	GTCTC	3 cut(s)	456, 840, 1235
AlwI	GGATC	3 cut(s)	486, 1160, 1173
AlwNI	CAGNNNCTG	2 cut(s)	143, 1201
Ama87I	CYCGRG	1 cut(s)	192
AoxI	GGCC	3 cut(s)	814, 916, 1250
ApeKI	GCWGC	3 cut(s)	143, 336, 675
ApoI	RAATTY	3 cut(s)	121, 244, 600
AseI	ATTAAT	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	1104
AspS9I	GGNCC	2 cut(s)	814, 917
AsuHPI	GGTGA	7 cut(s)	55, 113, 287, 587, 950, 968, 1313
AvaI	CYCGRG	1 cut(s)	192
AxyI	CCTNAGG	1 cut(s)	1194
BamHI	GGATCC	1 cut(s)	1165
BanII	GRGCYC	2 cut(s)	199, 1111
BauI	CACGAG	1 cut(s)	781
BbsI	GAAGAC	1 cut(s)	561
Bbv12I	GWGCWC	2 cut(s)	199, 428
BbvCI	CCTCAGC	1 cut(s)	1247
BbvI	GCAGC	3 cut(s)	130, 348, 662
BccI	CCATC	2 cut(s)	591, 1277
BceAI	ACGGC	1 cut(s)	841
BciT130I	CCWGG	1 cut(s)	75
BcoDI	GTCTC	3 cut(s)	456, 840, 1235
BcuI	ACTAGT	1 cut(s)	866
BfaI	CTAG	5 cut(s)	435, 867, 971, 990, 1023
BfmI	CTRYAG	3 cut(s)	135, 204, 1035
BisI	GCNGC	4 cut(s)	144, 337, 676, 1253
BlsI	GCNGC	4 cut(s)	145, 338, 677, 1254
Bme1390I	CCNGG	1 cut(s)	75
BmeT110I	CYCGRG	1 cut(s)	192
BmgT120I	GGNCC	2 cut(s)	814, 917
BmiI	GGNNCC	4 cut(s)	619, 1110, 1167, 1288
BmrFI	CCNGG	1 cut(s)	75
BmrI	ACTGGG	1 cut(s)	1147
BmsI	GCATC	2 cut(s)	495, 812
BmuI	ACTGGG	1 cut(s)	1147
BpiI	GAAGAC	1 cut(s)	561
BplI	GAGNNNNNCTC	2 cut(s)	413, 445
Bpu10I	CCTNAGC	2 cut(s)	147, 1247
BsaI	GGTCTC	1 cut(s)	456
BsaJI	CCNNGG	3 cut(s)	505, 810, 1253
Bsc4I	CCNNNNNNNGG	2 cut(s)	926, 1322
Bse118I	RCCGGY	2 cut(s)	588, 1298
Bse1I	ACTGG	2 cut(s)	1142, 1206
Bse21I	CCTNAGG	1 cut(s)	1194
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	3 cut(s)	505, 810, 1253
BseGI	GGATG	3 cut(s)	269, 806, 1288
BseLI	CCNNNNNNNGG	2 cut(s)	926, 1322
BseMII	CTCAG	5 cut(s)	411, 539, 897, 1208, 1238
BseNI	ACTGG	2 cut(s)	1142, 1206
BseRI	GAGGAG	3 cut(s)	201, 418, 1101
BseXI	GCAGC	3 cut(s)	130, 348, 662
Bsh1236I	CGCG	1 cut(s)	1255
BshFI	GGCC	3 cut(s)	816, 918, 1252
BsiHKAI	GWGCWC	2 cut(s)	199, 428
BsiHKCI	CYCGRG	1 cut(s)	192
BsiSI	CCGG	2 cut(s)	589, 1299
BslI	CCNNNNNNNGG	2 cut(s)	926, 1322
BsmAI	GTCTC	3 cut(s)	456, 840, 1235
BsmBI	CGTCTC	1 cut(s)	1235
BsnI	GGCC	3 cut(s)	816, 918, 1252
Bso31I	GGTCTC	1 cut(s)	456
BsoBI	CYCGRG	1 cut(s)	192
Bsp1286I	GDGCHC	3 cut(s)	199, 428, 1111
Bsp143I	GATC	5 cut(s)	478, 537, 1069, 1165, 1210
Bsp19I	CCATGG	1 cut(s)	505
BspACI	CCGC	5 cut(s)	393, 573, 896, 1253, 1255
BspANI	GGCC	3 cut(s)	816, 918, 1252
BspCNI	CTCAG	5 cut(s)	412, 538, 898, 1207, 1239
BspFNI	CGCG	1 cut(s)	1255
BspHI	TCATGA	1 cut(s)	789
BspLI	GGNNCC	4 cut(s)	619, 1110, 1167, 1288
BspPI	GGATC	3 cut(s)	486, 1160, 1173
BspTNI	GGTCTC	1 cut(s)	456
BsrFI	RCCGGY	2 cut(s)	588, 1298
BsrI	ACTGG	2 cut(s)	1142, 1206
BssAI	RCCGGY	2 cut(s)	588, 1298
BssECI	CCNNGG	3 cut(s)	505, 810, 1253
BssMI	GATC	5 cut(s)	478, 537, 1069, 1165, 1210
BssNAI	GTATAC	2 cut(s)	861, 1337
BssSI	CACGAG	1 cut(s)	781
BssT1I	CCWWGG	2 cut(s)	505, 810
Bst1107I	GTATAC	2 cut(s)	861, 1337
Bst2BI	CACGAG	1 cut(s)	781
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	4 cut(s)	59, 67, 139, 938
Bst6I	CTCTTC	2 cut(s)	436, 648
BstDEI	CTNAG	7 cut(s)	147, 420, 497, 525, 906, 1194, 1247
BstDSI	CCRYGG	2 cut(s)	505, 1253
BstEII	GGTNACC	1 cut(s)	529
BstF5I	GGATG	3 cut(s)	269, 806, 1288
BstFNI	CGCG	1 cut(s)	1255
BstHHI	GCGC	1 cut(s)	1104
BstKTI	GATC	5 cut(s)	481, 540, 1072, 1168, 1213
BstMAI	GTCTC	3 cut(s)	456, 840, 1235
BstMBI	GATC	5 cut(s)	478, 537, 1069, 1165, 1210
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 594, 1252
BstNI	CCWGG	1 cut(s)	75
BstNSI	RCATGY	2 cut(s)	383, 670
BstPI	GGTNACC	1 cut(s)	529
BstSCI	CCNGG	1 cut(s)	73
BstSFI	CTRYAG	3 cut(s)	135, 204, 1035
BstUI	CGCG	1 cut(s)	1255
BstV1I	GCAGC	3 cut(s)	130, 348, 662
BstV2I	GAAGAC	1 cut(s)	561
BstX2I	RGATCY	2 cut(s)	478, 1165
BstYI	RGATCY	2 cut(s)	478, 1165
BstZ17I	GTATAC	2 cut(s)	861, 1337
Bsu36I	CCTNAGG	1 cut(s)	1194
BsuRI	GGCC	3 cut(s)	816, 918, 1252
BtgI	CCRYGG	2 cut(s)	505, 1253
BtgZI	GCGATG	2 cut(s)	569, 753
BtsCI	GGATG	3 cut(s)	269, 806, 1288
BtsIMutI	CAGTG	2 cut(s)	558, 952
CaiI	CAGNNNCTG	2 cut(s)	143, 1201
CciI	TCATGA	1 cut(s)	789
CfoI	GCGC	1 cut(s)	1104
Cfr10I	RCCGGY	2 cut(s)	588, 1298
Cfr13I	GGNCC	2 cut(s)	814, 917
Cfr42I	CCGCGG	1 cut(s)	1256
CseI	GACGC	1 cut(s)	1252
Csp6I	GTAC	1 cut(s)	1326
CviQI	GTAC	1 cut(s)	1326
DdeI	CTNAG	7 cut(s)	147, 420, 497, 525, 906, 1194, 1247
DpnI	GATC	5 cut(s)	480, 539, 1071, 1167, 1212
DpnII	GATC	5 cut(s)	478, 537, 1069, 1165, 1210
DraI	TTTAAA	1 cut(s)	243
Eam1104I	CTCTTC	2 cut(s)	436, 648
EarI	CTCTTC	2 cut(s)	436, 648
Ecl136II	GAGCTC	1 cut(s)	197
Eco130I	CCWWGG	2 cut(s)	505, 810
Eco24I	GRGCYC	2 cut(s)	199, 1111
Eco31I	GGTCTC	1 cut(s)	456
Eco32I	GATATC	1 cut(s)	943
Eco53kI	GAGCTC	1 cut(s)	197
Eco57I	CTGAAG	5 cut(s)	147, 204, 423, 573, 1250
Eco81I	CCTNAGG	1 cut(s)	1194
Eco88I	CYCGRG	1 cut(s)	192
Eco91I	GGTNACC	1 cut(s)	529
EcoICRI	GAGCTC	1 cut(s)	197
EcoO65I	GGTNACC	1 cut(s)	529
EcoRII	CCWGG	1 cut(s)	73
EcoRV	GATATC	1 cut(s)	943
EcoT14I	CCWWGG	2 cut(s)	505, 810
EcoT22I	ATGCAT	1 cut(s)	488
EcoT38I	GRGCYC	2 cut(s)	199, 1111
ErhI	CCWWGG	2 cut(s)	505, 810
Esp3I	CGTCTC	1 cut(s)	1235
FblI	GTMKAC	2 cut(s)	860, 1336
Fnu4HI	GCNGC	4 cut(s)	144, 337, 676, 1253
FokI	GGATG	3 cut(s)	276, 793, 1295
FriOI	GRGCYC	2 cut(s)	199, 1111
Fsp4HI	GCNGC	4 cut(s)	144, 337, 676, 1253
FspBI	CTAG	5 cut(s)	435, 867, 971, 990, 1023
GlaI	GCGC	1 cut(s)	1103
GluI	GCNGC	4 cut(s)	144, 337, 676, 1253
HaeIII	GGCC	3 cut(s)	816, 918, 1252
HapII	CCGG	2 cut(s)	589, 1299
HgaI	GACGC	1 cut(s)	1252
HhaI	GCGC	1 cut(s)	1104
Hin6I	GCGC	1 cut(s)	1102
HinP1I	GCGC	1 cut(s)	1102
HindIII	AAGCTT	1 cut(s)	129
HinfI	GANTC	4 cut(s)	251, 521, 823, 974
HpaII	CCGG	2 cut(s)	589, 1299
HphI	GGTGA	7 cut(s)	55, 113, 287, 587, 950, 968, 1313
Hpy166II	GTNNAC	4 cut(s)	861, 934, 959, 1337
Hpy188I	TCNGA	5 cut(s)	7, 127, 250, 472, 982
Hpy188III	TCNNGA	7 cut(s)	615, 781, 790, 905, 1023, 1058, 1196
Hpy8I	GTNNAC	4 cut(s)	861, 934, 959, 1337
Hpy99I	CGWCG	1 cut(s)	982
HpyAV	CCTTC	1 cut(s)	1029
HpyCH4III	ACNGT	4 cut(s)	59, 67, 139, 938
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	8 cut(s)	17, 222, 316, 440, 486, 597, 997, 1011
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 594, 1252
HpyF3I	CTNAG	7 cut(s)	147, 420, 497, 525, 906, 1194, 1247
HpySE526I	ACGT	1 cut(s)	312
HspAI	GCGC	1 cut(s)	1102
KspI	CCGCGG	1 cut(s)	1256
Kzo9I	GATC	5 cut(s)	478, 537, 1069, 1165, 1210
LmnI	GCTCC	4 cut(s)	214, 376, 431, 1114
Lsp1109I	GCAGC	3 cut(s)	130, 348, 662
LweI	GCATC	2 cut(s)	495, 812
MaeI	CTAG	5 cut(s)	435, 867, 971, 990, 1023
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	4 cut(s)	45, 61, 529, 763
MalI	GATC	5 cut(s)	480, 539, 1071, 1167, 1212
MboI	GATC	5 cut(s)	478, 537, 1069, 1165, 1210
MboII	GAAGA	5 cut(s)	164, 423, 566, 665, 703
MflI	RGATCY	2 cut(s)	478, 1165
MhlI	GDGCHC	3 cut(s)	199, 428, 1111
MmeI	TCCRAC	1 cut(s)	960
Mph1103I	ATGCAT	1 cut(s)	488
MseI	TTAA	3 cut(s)	242, 284, 836
MspA1I	CMGCKG	2 cut(s)	419, 1255
MspI	CCGG	2 cut(s)	589, 1299
MspR9I	CCNGG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	75
MvnI	CGCG	1 cut(s)	1255
MwoI	GCNNNNNNNGC	3 cut(s)	194, 594, 1252
NcoI	CCATGG	1 cut(s)	505
NdeII	GATC	5 cut(s)	478, 537, 1069, 1165, 1210
NlaIV	GGNNCC	4 cut(s)	619, 1110, 1167, 1288
NmuCI	GTSAC	2 cut(s)	61, 763
NsiI	ATGCAT	1 cut(s)	488
NspI	RCATGY	2 cut(s)	383, 670
PaeR7I	CTCGAG	1 cut(s)	192
PagI	TCATGA	1 cut(s)	789
PciI	ACATGT	1 cut(s)	666
PfeI	GAWTC	4 cut(s)	251, 521, 823, 974
PflMI	CCANNNNNTGG	1 cut(s)	926
PfoI	TCCNGGA	1 cut(s)	73
PkrI	GCNGC	4 cut(s)	145, 338, 677, 1254
PscI	ACATGT	1 cut(s)	666
PshBI	ATTAAT	1 cut(s)	284
PsiI	TTATAA	1 cut(s)	33
Psp124BI	GAGCTC	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	73
PspEI	GGTNACC	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	4 cut(s)	619, 1110, 1167, 1288
PspPI	GGNCC	2 cut(s)	814, 917
PspXI	VCTCGAGB	1 cut(s)	192
PsrI	GAACNNNNNNTAC	2 cut(s)	250, 282
PstNI	CAGNNNCTG	2 cut(s)	143, 1201
PsuI	RGATCY	2 cut(s)	478, 1165
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	1 cut(s)	1327
RsaNI	GTAC	1 cut(s)	1326
SacI	GAGCTC	1 cut(s)	199
SacII	CCGCGG	1 cut(s)	1256
SaqAI	TTAA	3 cut(s)	242, 284, 836
SatI	GCNGC	4 cut(s)	144, 337, 676, 1253
Sau3AI	GATC	5 cut(s)	478, 537, 1069, 1165, 1210
Sau96I	GGNCC	2 cut(s)	814, 917
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	3 cut(s)	199, 428, 1111
SfaNI	GCATC	2 cut(s)	495, 812
SfcI	CTRYAG	3 cut(s)	135, 204, 1035
Sfr274I	CTCGAG	1 cut(s)	192
Sfr303I	CCGCGG	1 cut(s)	1256
SgrBI	CCGCGG	1 cut(s)	1256
SlaI	CTCGAG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	192
SmoI	CTYRAG	1 cut(s)	192
SpeI	ACTAGT	1 cut(s)	866
SsiI	CCGC	5 cut(s)	393, 573, 896, 1253, 1255
SspMI	CTAG	5 cut(s)	435, 867, 971, 990, 1023
SstI	GAGCTC	1 cut(s)	199
StyD4I	CCNGG	1 cut(s)	73
StyI	CCWWGG	2 cut(s)	505, 810
TaaI	ACNGT	4 cut(s)	59, 67, 139, 938
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	2 cut(s)	193, 1057
TauI	GCSGC	1 cut(s)	1255
TfiI	GAWTC	4 cut(s)	251, 521, 823, 974
Tru1I	TTAA	3 cut(s)	242, 284, 836
Tru9I	TTAA	3 cut(s)	242, 284, 836
TscAI	CASTG	2 cut(s)	565, 952
TseFI	GTSAC	2 cut(s)	61, 763
TseI	GCWGC	3 cut(s)	143, 336, 675
Tsp45I	GTSAC	2 cut(s)	61, 763
TspDTI	ATGAA	6 cut(s)	192, 309, 426, 704, 723, 836
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	2 cut(s)	565, 952
Van91I	CCANNNNNTGG	1 cut(s)	926
VspI	ATTAAT	1 cut(s)	284
XapI	RAATTY	3 cut(s)	121, 244, 600
XbaI	TCTAGA	1 cut(s)	1022
XceI	RCATGY	2 cut(s)	383, 670
XcmI	CCANNNNNNNNNTGG	1 cut(s)	512
XhoI	CTCGAG	1 cut(s)	192
XmiI	GTMKAC	2 cut(s)	860, 1336
XspI	CTAG	5 cut(s)	435, 867, 971, 990, 1023
Zsp2I	ATGCAT	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.