RchiOBHm_Chr7g0219501

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0004332
Physical Location & Seq
Forward (+)
37970358 .. 37977160
6803 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19644

Sequence Viewer

Length: 1683 bp
ATGTCTGAAAGTTCTGCACCTGATCTTGTATACAAGAGGAGGAAGTTACAAGAAAACTCTGAGACCATACTTTCAGCATGTGATGTGAAATACCCAAGAACTGGTGATTGCCTTTCGTGTATACATTCTGATACTCCTTCACTTGCTGGTAAGGACCAATATGTTCATTCTCAAAAAGGGGAACTGTCAGCAACTAGTTTAATGTCTGAAAGTACTGCACCTAATCTTGTATACAAGAGGAGGAATTTACAAGAAAATTCTGTCACCATACTATCAGCATGTGATGTGAAAAACCCGAGAACTGGTGATTGCCTTTCGTTTATACATTCTGATGCTCCTTCACTTGCTGGTAAGGATCAATATGTTCATTCTCAAAAAGGGGAACTGTCAGCGATTAGTATAATGTCTGAAAGTACTGCACCTAATCTTGTATACAAGAGGAAGAAGTTACGAGACCCGAGAACTGGTGATTGCCTTTCGTTTATACATTCTGATGCTCCTTCACTTGCTGGTAAGGCATATGTTCATTCTCAAAAAGGGGATCAGAATGGACCATGTTTATGCAATAGAGCATCTGCTGTTATAAAATCAAAGTCTTTTCATGGGTTTTCTGTTGATGAGGAATTAATTTCTAATGAAGCAACTAAAGCTAGTGTTCCAAAAGGTTTAGAGGTAGACAGTGTAAACGATAGTTGCTCGTCATCAAAATCAAATATGGAGAATGTTTCCACCTCCAATAAGACTGAAGTAGATGAAACAGCTGATTGCTCCTCTTCTAGTGCAATCGTTATGGAAGCTGTGGGAGATCTGTCTGAAAAGGATCTCTGCATCTCTATTCTCAGAACCCATGGGCTGCTCGGGGAAGTTCGGATAACTAGGAGCTGTGGTTCTGCTGATGACATTAATACCAGTAGCAGCAAGAGCTGTCGACGGTCATGCAAAATTTGTAATCGTTCAGAAACCGCTCTGAAAATGCTGATTTGTGATAATTGTGAAGAGGCATTTCACATGTCATGCTGCCAGCCACGAATAAAGAAGGTACCTATAGATGAATGGTTCTGTCATTCCTGCTTGAGAGAGAAACATACAATTCTAAAAGACAGAGTTACTAGAAAATTTCCGAATATCACTAGTGTCATGAGTAGGAGTGCGTCATCTAAGGATGAGGTGAATCCCATACTATTGATGCTGAGAGACACTGAGCCATATAGAACTAGTGTTCGGGTTGGCAAAGGTTTTCAAGCGGAAGTTGATGACTGGTCAGGTCCAATAAACAATGATGGCATTGGTGAACCGTTGGAATTACATCCTTCGGAGTATGCTAGACTGCATGAGTTGAATTCCAGCAAACCCTCAAAAATTAACTCTATAAGTAACTGGATCCAATGCCGAGAAGTTGTTGATCCTGAAAATGGAATAAGATGTGGAAAGTGGCGCAGGGCTCCTCTTTTTGAAGTCCAAACTAATGACTGGGAGTGCTTCTGCTCTGTTCTGTGGGATCCAAGCCATGCTGATTGTAATGTGCCTCAGGAATTGGAAACAGATCAAGTTCTAAAGCAACTGAAGTATGTTGAGACGCTAAGGCCCCGGCTATCTGCTCAACAGCATAATTTGGGTCGCGCCAACAGCACTGGTGATTTACAAAACTGCAGAATAGATACAAAAAGTATACAAACTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0019899 GO:0070063
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2 PHD

Protein Analysis

560

Amino Acids

62.04

Weight (kDa)

6.45

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 313 - 357 8.3e-10 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 584
Acc65I GGTACC 1 cut(s) 1039
AccB1I GGYRCC 1 cut(s) 1039
AccB7I CCANNNNNTGG 1 cut(s) 101
AccBSI CCGCTC 1 cut(s) 965
AccI GTMKAC 7 cut(s) 30, 121, 231, 432, 675, 928, 1669
AccII CGCG 1 cut(s) 1620
AciI CCGC 2 cut(s) 963, 1244
AclWI GGATC 8 cut(s) 363, 549, 828, 1375, 1388, 1397, 1493, 1506
AcsI RAATTY 5 cut(s) 244, 256, 942, 1115, 1339
AcuI CTGAAG 2 cut(s) 765, 1583
AfaI GTAC 3 cut(s) 214, 415, 1041
AfiI CCNNNNNNNGG 4 cut(s) 101, 302, 464, 1412
AflIII ACRYGT 1 cut(s) 1008
AgsI TTSAA 3 cut(s) 1241, 1339, 1454
AhlI ACTAGT 3 cut(s) 194, 1130, 1214
AloI GAACNNNNNNTCC 2 cut(s) 871, 903
AluBI AGCT 5 cut(s) 650, 761, 797, 882, 924
AluI AGCT 5 cut(s) 650, 761, 797, 882, 924
Alw26I GTCTC 4 cut(s) 56, 447, 1188, 1568
AlwI GGATC 8 cut(s) 363, 549, 828, 1375, 1388, 1397, 1493, 1506
Ama87I CYCGRG 3 cut(s) 295, 457, 857
AoxI GGCC 1 cut(s) 1583
ApeKI GCWGC 3 cut(s) 853, 915, 1017
ApoI RAATTY 5 cut(s) 244, 256, 942, 1115, 1339
AseI ATTAAT 2 cut(s) 626, 903
Asp718I GGTACC 1 cut(s) 1039
AspLEI GCGC 2 cut(s) 1437, 1622
AspS9I GGNCC 4 cut(s) 154, 551, 1265, 1584
AsuC2I CCSGG 1 cut(s) 1588
AsuHPI GGTGA 7 cut(s) 116, 256, 317, 479, 1180, 1301, 1646
AvaI CYCGRG 3 cut(s) 295, 457, 857
AvaII GGWCC 3 cut(s) 154, 551, 1265
AxyI CCTNAGG 1 cut(s) 1527
BamHI GGATCC 2 cut(s) 1380, 1498
BanI GGYRCC 1 cut(s) 1039
BanII GRGCYC 1 cut(s) 1444
BbvI GCAGC 3 cut(s) 840, 927, 1004
BccI CCATC 1 cut(s) 1274
BcgI CGANNNNNNTGC 2 cut(s) 918, 952
BcnI CCSGG 1 cut(s) 1588
BcoDI GTCTC 4 cut(s) 56, 447, 1188, 1568
BcuI ACTAGT 3 cut(s) 194, 1130, 1214
BfaI CTAG 8 cut(s) 195, 651, 777, 876, 1110, 1131, 1215, 1323
BfmI CTRYAG 2 cut(s) 1044, 1648
BglII AGATCT 1 cut(s) 805
BisI GCNGC 3 cut(s) 854, 916, 1018
BlsI GCNGC 3 cut(s) 855, 917, 1019
BmcAI AGTACT 2 cut(s) 214, 415
Bme1390I CCNGG 1 cut(s) 1588
Bme18I GGWCC 3 cut(s) 154, 551, 1265
BmeT110I CYCGRG 3 cut(s) 295, 457, 857
BmgT120I GGNCC 4 cut(s) 154, 551, 1265, 1584
BmiI GGNNCC 5 cut(s) 1041, 1382, 1443, 1500, 1586
BmrFI CCNGG 1 cut(s) 1588
BmrI ACTGGG 1 cut(s) 1480
BmsI GCATC 5 cut(s) 322, 484, 581, 837, 1176
BmuI ACTGGG 1 cut(s) 1480
Bpu10I CCTNAGC 1 cut(s) 1580
BpuEI CTTGAG 1 cut(s) 1093
BpuMI CCSGG 1 cut(s) 1588
BsaI GGTCTC 2 cut(s) 56, 447
BsaJI CCNNGG 2 cut(s) 847, 1586
BsaXI ACNNNNNCTCC 2 cut(s) 871, 901
Bsc4I CCNNNNNNNGG 4 cut(s) 101, 302, 464, 1412
Bse1I ACTGG 8 cut(s) 106, 307, 469, 909, 1262, 1382, 1475, 1636
Bse21I CCTNAGG 1 cut(s) 1527
BseDI CCNNGG 2 cut(s) 847, 1586
BseGI GGATG 2 cut(s) 1168, 1306
BseLI CCNNNNNNNGG 4 cut(s) 101, 302, 464, 1412
BseMII CTCAG 5 cut(s) 51, 853, 1181, 1191, 1541
BseNI ACTGG 8 cut(s) 106, 307, 469, 909, 1262, 1382, 1475, 1636
BseRI GAGGAG 4 cut(s) 52, 253, 760, 1434
BseXI GCAGC 3 cut(s) 840, 927, 1004
BsgI GTGCAG 2 cut(s) 201, 402
Bsh1236I CGCG 1 cut(s) 1620
BshFI GGCC 1 cut(s) 1585
BshNI GGYRCC 1 cut(s) 1039
BsiHKCI CYCGRG 3 cut(s) 295, 457, 857
BsiSI CCGG 1 cut(s) 1588
BslI CCNNNNNNNGG 4 cut(s) 101, 302, 464, 1412
BsmAI GTCTC 4 cut(s) 56, 447, 1188, 1568
BsmBI CGTCTC 1 cut(s) 1568
BsnI GGCC 1 cut(s) 1585
Bso31I GGTCTC 2 cut(s) 56, 447
BsoBI CYCGRG 3 cut(s) 295, 457, 857
Bsp1286I GDGCHC 1 cut(s) 1444
Bsp143I GATC 9 cut(s) 22, 355, 541, 805, 820, 1380, 1402, 1498, 1543
Bsp19I CCATGG 1 cut(s) 847
BspACI CCGC 2 cut(s) 963, 1244
BspANI GGCC 1 cut(s) 1585
BspCNI CTCAG 5 cut(s) 52, 852, 1182, 1192, 1540
BspFNI CGCG 1 cut(s) 1620
BspHI TCATGA 1 cut(s) 1137
BspLI GGNNCC 5 cut(s) 1041, 1382, 1443, 1500, 1586
BspMAI CTGCAG 1 cut(s) 1652
BspPI GGATC 8 cut(s) 363, 549, 828, 1375, 1388, 1397, 1493, 1506
BspT107I GGYRCC 1 cut(s) 1039
BspTNI GGTCTC 2 cut(s) 56, 447
BsrBI CCGCTC 1 cut(s) 965
BsrI ACTGG 8 cut(s) 106, 307, 469, 909, 1262, 1382, 1475, 1636
BssECI CCNNGG 2 cut(s) 847, 1586
BssMI GATC 9 cut(s) 22, 355, 541, 805, 820, 1380, 1402, 1498, 1543
BssNAI GTATAC 5 cut(s) 31, 122, 232, 433, 1670
BssT1I CCWWGG 1 cut(s) 847
Bst1107I GTATAC 5 cut(s) 31, 122, 232, 433, 1670
Bst4CI ACNGT 5 cut(s) 186, 387, 680, 933, 1296
Bst6I CTCTTC 2 cut(s) 778, 990
BstC8I GCNNGC 1 cut(s) 1022
BstDEI CTNAG 7 cut(s) 60, 839, 1158, 1190, 1200, 1527, 1580
BstDSI CCRYGG 1 cut(s) 847
BstF5I GGATG 2 cut(s) 1168, 1306
BstFNI CGCG 1 cut(s) 1620
BstHHI GCGC 2 cut(s) 1437, 1622
BstKTI GATC 9 cut(s) 25, 358, 544, 808, 823, 1383, 1405, 1501, 1546
BstMAI GTCTC 4 cut(s) 56, 447, 1188, 1568
BstMBI GATC 9 cut(s) 22, 355, 541, 805, 820, 1380, 1402, 1498, 1543
BstMWI GCNNNNNNNGC 4 cut(s) 515, 647, 921, 1626
BstNSI RCATGY 3 cut(s) 81, 282, 1012
BstSCI CCNGG 1 cut(s) 1586
BstSFI CTRYAG 2 cut(s) 1044, 1648
BstUI CGCG 1 cut(s) 1620
BstV1I GCAGC 3 cut(s) 840, 927, 1004
BstX2I RGATCY 4 cut(s) 805, 820, 1380, 1498
BstYI RGATCY 4 cut(s) 805, 820, 1380, 1498
BstZ17I GTATAC 5 cut(s) 31, 122, 232, 433, 1670
Bsu36I CCTNAGG 1 cut(s) 1527
BsuRI GGCC 1 cut(s) 1585
BtgI CCRYGG 1 cut(s) 847
BtsCI GGATG 2 cut(s) 1168, 1306
BtsIMutI CAGTG 3 cut(s) 685, 1197, 1629
Cac8I GCNNGC 1 cut(s) 1022
CciI TCATGA 1 cut(s) 1137
CfoI GCGC 2 cut(s) 1437, 1622
Cfr13I GGNCC 4 cut(s) 154, 551, 1265, 1584
CseI GACGC 2 cut(s) 1140, 1585
Csp6I GTAC 3 cut(s) 213, 414, 1040
CviQI GTAC 3 cut(s) 213, 414, 1040
DdeI CTNAG 7 cut(s) 60, 839, 1158, 1190, 1200, 1527, 1580
DpnI GATC 9 cut(s) 24, 357, 543, 807, 822, 1382, 1404, 1500, 1545
DpnII GATC 9 cut(s) 22, 355, 541, 805, 820, 1380, 1402, 1498, 1543
Eam1104I CTCTTC 2 cut(s) 778, 990
EarI CTCTTC 2 cut(s) 778, 990
Eco130I CCWWGG 1 cut(s) 847
Eco24I GRGCYC 1 cut(s) 1444
Eco31I GGTCTC 2 cut(s) 56, 447
Eco47I GGWCC 3 cut(s) 154, 551, 1265
Eco57I CTGAAG 2 cut(s) 765, 1583
Eco81I CCTNAGG 1 cut(s) 1527
Eco88I CYCGRG 3 cut(s) 295, 457, 857
EcoO109I RGGNCCY 1 cut(s) 1584
EcoRI GAATTC 1 cut(s) 1339
EcoT14I CCWWGG 1 cut(s) 847
EcoT38I GRGCYC 1 cut(s) 1444
ErhI CCWWGG 1 cut(s) 847
Esp3I CGTCTC 1 cut(s) 1568
FauNDI CATATG 1 cut(s) 520
FblI GTMKAC 7 cut(s) 30, 121, 231, 432, 675, 928, 1669
Fnu4HI GCNGC 3 cut(s) 854, 916, 1018
FokI GGATG 2 cut(s) 1175, 1293
FriOI GRGCYC 1 cut(s) 1444
Fsp4HI GCNGC 3 cut(s) 854, 916, 1018
FspBI CTAG 8 cut(s) 195, 651, 777, 876, 1110, 1131, 1215, 1323
GlaI GCGC 2 cut(s) 1436, 1621
GluI GCNGC 3 cut(s) 854, 916, 1018
HaeIII GGCC 1 cut(s) 1585
HapII CCGG 1 cut(s) 1588
HgaI GACGC 2 cut(s) 1140, 1585
HhaI GCGC 2 cut(s) 1437, 1622
Hin6I GCGC 2 cut(s) 1435, 1620
HinP1I GCGC 2 cut(s) 1435, 1620
HincII GTYRAC 1 cut(s) 929
HindII GTYRAC 1 cut(s) 929
HinfI GANTC 1 cut(s) 1171
HpaII CCGG 1 cut(s) 1588
HphI GGTGA 7 cut(s) 116, 256, 317, 479, 1180, 1301, 1646
Hpy166II GTNNAC 9 cut(s) 31, 122, 232, 433, 676, 685, 929, 1292, 1670
Hpy188III TCNNGA 3 cut(s) 1138, 1406, 1529
Hpy8I GTNNAC 9 cut(s) 31, 122, 232, 433, 676, 685, 929, 1292, 1670
Hpy99I CGWCG 1 cut(s) 933
HpyAV CCTTC 5 cut(s) 147, 348, 510, 1030, 1320
HpyCH4III ACNGT 5 cut(s) 186, 387, 680, 933, 1296
HpyCH4V TGCA 9 cut(s) 17, 218, 419, 564, 782, 828, 939, 1330, 1650
HpyF10VI GCNNNNNNNGC 4 cut(s) 515, 647, 921, 1626
HpyF3I CTNAG 7 cut(s) 60, 839, 1158, 1190, 1200, 1527, 1580
HspAI GCGC 2 cut(s) 1435, 1620
KpnI GGTACC 1 cut(s) 1043
Kzo9I GATC 9 cut(s) 22, 355, 541, 805, 820, 1380, 1402, 1498, 1543
LmnI GCTCC 5 cut(s) 340, 502, 773, 879, 1447
Lsp1109I GCAGC 3 cut(s) 840, 927, 1004
LweI GCATC 5 cut(s) 322, 484, 581, 837, 1176
MaeI CTAG 8 cut(s) 195, 651, 777, 876, 1110, 1131, 1215, 1323
MaeIII GTNAC 5 cut(s) 45, 262, 447, 1105, 1373
MalI GATC 9 cut(s) 24, 357, 543, 807, 822, 1382, 1404, 1500, 1545
MbiI CCGCTC 1 cut(s) 965
MboI GATC 9 cut(s) 22, 355, 541, 805, 820, 1380, 1402, 1498, 1543
MboII GAAGA 3 cut(s) 454, 765, 1007
MflI RGATCY 4 cut(s) 805, 820, 1380, 1498
MhlI GDGCHC 1 cut(s) 1444
MmeI TCCRAC 1 cut(s) 1278
MseI TTAA 4 cut(s) 200, 626, 903, 1362
MslI CAYNNNNRTG 3 cut(s) 330, 492, 559
MspA1I CMGCKG 1 cut(s) 761
MspI CCGG 1 cut(s) 1588
MspR9I CCNGG 1 cut(s) 1588
MvnI CGCG 1 cut(s) 1620
MwoI GCNNNNNNNGC 4 cut(s) 515, 647, 921, 1626
NciI CCSGG 1 cut(s) 1588
NcoI CCATGG 1 cut(s) 847
NdeI CATATG 1 cut(s) 520
NdeII GATC 9 cut(s) 22, 355, 541, 805, 820, 1380, 1402, 1498, 1543
NlaIV GGNNCC 5 cut(s) 1041, 1382, 1443, 1500, 1586
NmeAIII GCCGAG 1 cut(s) 1415
NmuCI GTSAC 1 cut(s) 262
NspI RCATGY 3 cut(s) 81, 282, 1012
PagI TCATGA 1 cut(s) 1137
PciI ACATGT 1 cut(s) 1008
PfeI GAWTC 1 cut(s) 1171
PflMI CCANNNNNTGG 1 cut(s) 101
PkrI GCNGC 3 cut(s) 855, 917, 1019
PscI ACATGT 1 cut(s) 1008
PshBI ATTAAT 2 cut(s) 626, 903
PsiI TTATAA 1 cut(s) 584
PspN4I GGNNCC 5 cut(s) 1041, 1382, 1443, 1500, 1586
PspPI GGNCC 4 cut(s) 154, 551, 1265, 1584
PstI CTGCAG 1 cut(s) 1652
PsuI RGATCY 4 cut(s) 805, 820, 1380, 1498
PvuII CAGCTG 1 cut(s) 761
RsaI GTAC 3 cut(s) 214, 415, 1041
RsaNI GTAC 3 cut(s) 213, 414, 1040
RseI CAYNNNNRTG 3 cut(s) 330, 492, 559
SalI GTCGAC 1 cut(s) 927
SaqAI TTAA 4 cut(s) 200, 626, 903, 1362
SatI GCNGC 3 cut(s) 854, 916, 1018
Sau3AI GATC 9 cut(s) 22, 355, 541, 805, 820, 1380, 1402, 1498, 1543
Sau96I GGNCC 4 cut(s) 154, 551, 1265, 1584
ScaI AGTACT 2 cut(s) 214, 415
ScrFI CCNGG 1 cut(s) 1588
SduI GDGCHC 1 cut(s) 1444
SfaNI GCATC 5 cut(s) 322, 484, 581, 837, 1176
SfcI CTRYAG 2 cut(s) 1044, 1648
SinI GGWCC 3 cut(s) 154, 551, 1265
SmiMI CAYNNNNRTG 3 cut(s) 330, 492, 559
SmlI CTYRAG 1 cut(s) 1072
SmoI CTYRAG 1 cut(s) 1072
SpeI ACTAGT 3 cut(s) 194, 1130, 1214
SsiI CCGC 2 cut(s) 963, 1244
SspMI CTAG 8 cut(s) 195, 651, 777, 876, 1110, 1131, 1215, 1323
StyD4I CCNGG 1 cut(s) 1586
StyI CCWWGG 1 cut(s) 847
TaaI ACNGT 5 cut(s) 186, 387, 680, 933, 1296
TaqI TCGA 1 cut(s) 928
TatI WGTACW 2 cut(s) 212, 413
TfiI GAWTC 1 cut(s) 1171
Tru1I TTAA 4 cut(s) 200, 626, 903, 1362
Tru9I TTAA 4 cut(s) 200, 626, 903, 1362
TscAI CASTG 3 cut(s) 685, 1204, 1636
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 3 cut(s) 853, 915, 1017
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 7 cut(s) 155, 356, 515, 590, 651, 768, 1065
TspRI CASTG 3 cut(s) 685, 1204, 1636
Van91I CCANNNNNTGG 1 cut(s) 101
VpaK11BI GGWCC 3 cut(s) 154, 551, 1265
VspI ATTAAT 2 cut(s) 626, 903
XapI RAATTY 5 cut(s) 244, 256, 942, 1115, 1339
XceI RCATGY 3 cut(s) 81, 282, 1012
XmiI GTMKAC 7 cut(s) 30, 121, 231, 432, 675, 928, 1669
XspI CTAG 8 cut(s) 195, 651, 777, 876, 1110, 1131, 1215, 1323
ZrmI AGTACT 2 cut(s) 214, 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.