Rorug07G0185700

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004332
Physical Location & Seq
Reverse (-)
15566414 .. 15608313
41900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0185700.1

Sequence Viewer

Length: 411 bp
ATGGGGGATCTTTACGTTTGGCTAATTTCCTTCTTCTTCCTCATAGCCCTTCTTGCTCTAGTAGTTTTCCAGCTGATGTGCTTAGCAGATCTAGAGTTTGATTATATCAACCCTTATGACTCTTCAACACGGATTAACAGAGTGATTTTGCCCGAGTACATCCTACAAGGACTATTAGGTGCCATCTATCTTGTAACAGGGCATTGGATCATGGCACTATTCTGTGGTCCGTACCTCTATTATAACGTGACACTGTATACGAGTAAAAGGCACCTCGTAGATGTTACTGAGATATTCAATATGCTCCACAAAGAGAAGAAGCAACGACTTTTCAAACTCTTCTATCTTGTTTTCCTTCTCTTTCTCTCAATATTCTGGATGATTCTAACTGCATTGGAAGACCACGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0019899 GO:0070063
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2 PHD

Protein Analysis

136

Amino Acids

16.19

Weight (kDa)

5.74

Isoelectric Point (pI)

36.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cornichon PF03311 6 - 125 3.1e-41 Cornichon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AccB1I GGYRCC 2 cut(s) 179, 270
AccI GTMKAC 1 cut(s) 257
AclWI GGATC 2 cut(s) 15, 215
AfaI GTAC 2 cut(s) 158, 233
AgsI TTSAA 3 cut(s) 126, 298, 334
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
AlwI GGATC 2 cut(s) 15, 215
Ama87I CYCGRG 1 cut(s) 152
AspS9I GGNCC 1 cut(s) 227
AvaI CYCGRG 1 cut(s) 152
AvaII GGWCC 1 cut(s) 227
BanI GGYRCC 2 cut(s) 179, 270
BauI CACGAG 1 cut(s) 404
BbsI GAAGAC 1 cut(s) 405
BccI CCATC 1 cut(s) 191
BfaI CTAG 2 cut(s) 59, 92
BglII AGATCT 1 cut(s) 88
BlpI GCTNAGC 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 227
BmeT110I CYCGRG 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 2 cut(s) 181, 272
BpiI GAAGAC 1 cut(s) 405
Bpu1102I GCTNAGC 1 cut(s) 82
BseGI GGATG 2 cut(s) 159, 384
BseMII CTCAG 1 cut(s) 279
BshNI GGYRCC 2 cut(s) 179, 270
BsiHKCI CYCGRG 1 cut(s) 152
BsoBI CYCGRG 1 cut(s) 152
Bsp143I GATC 3 cut(s) 7, 88, 207
Bsp1720I GCTNAGC 1 cut(s) 82
BspCNI CTCAG 1 cut(s) 280
BspLI GGNNCC 2 cut(s) 181, 272
BspPI GGATC 2 cut(s) 15, 215
BspT107I GGYRCC 2 cut(s) 179, 270
BssMI GATC 3 cut(s) 7, 88, 207
BssNAI GTATAC 1 cut(s) 258
BssSI CACGAG 1 cut(s) 404
Bst1107I GTATAC 1 cut(s) 258
Bst2BI CACGAG 1 cut(s) 404
Bst4CI ACNGT 1 cut(s) 255
Bst6I CTCTTC 2 cut(s) 127, 344
BstDEI CTNAG 2 cut(s) 82, 288
BstF5I GGATG 2 cut(s) 159, 384
BstKTI GATC 3 cut(s) 10, 91, 210
BstMBI GATC 3 cut(s) 7, 88, 207
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstV2I GAAGAC 1 cut(s) 405
BstX2I RGATCY 2 cut(s) 7, 88
BstYI RGATCY 2 cut(s) 7, 88
BstZ17I GTATAC 1 cut(s) 258
BtsCI GGATG 2 cut(s) 159, 384
BtsIMutI CAGTG 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 227
Csp6I GTAC 2 cut(s) 157, 232
CviAII CATG 1 cut(s) 211
CviJI RGCY 3 cut(s) 22, 47, 73
CviKI_1 RGCY 3 cut(s) 22, 47, 73
CviQI GTAC 2 cut(s) 157, 232
DdeI CTNAG 2 cut(s) 82, 288
DpnI GATC 3 cut(s) 9, 90, 209
DpnII GATC 3 cut(s) 7, 88, 207
Eam1104I CTCTTC 2 cut(s) 127, 344
EarI CTCTTC 2 cut(s) 127, 344
Eco47I GGWCC 1 cut(s) 227
Eco88I CYCGRG 1 cut(s) 152
FaeI CATG 1 cut(s) 214
FaiI YATR 7 cut(s) 44, 105, 117, 212, 243, 258, 302
FatI CATG 1 cut(s) 210
FblI GTMKAC 1 cut(s) 257
FokI GGATG 2 cut(s) 146, 391
FspBI CTAG 2 cut(s) 59, 92
Hin1II CATG 1 cut(s) 214
HinfI GANTC 2 cut(s) 119, 382
Hpy166II GTNNAC 1 cut(s) 258
Hpy188III TCNNGA 2 cut(s) 92, 376
Hpy8I GTNNAC 1 cut(s) 258
HpyAV CCTTC 3 cut(s) 40, 59, 365
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4IV ACGT 2 cut(s) 15, 246
HpyCH4V TGCA 1 cut(s) 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 2 cut(s) 82, 288
HpySE526I ACGT 2 cut(s) 15, 246
Hsp92II CATG 1 cut(s) 214
Kzo9I GATC 3 cut(s) 7, 88, 207
LmnI GCTCC 1 cut(s) 309
LpnPI CCDG 3 cut(s) 83, 183, 361
MaeI CTAG 2 cut(s) 59, 92
MaeII ACGT 2 cut(s) 15, 246
MaeIII GTNAC 3 cut(s) 193, 247, 283
MalI GATC 3 cut(s) 9, 90, 209
MboI GATC 3 cut(s) 7, 88, 207
MboII GAAGA 6 cut(s) 25, 28, 114, 328, 331, 410
MflI RGATCY 2 cut(s) 7, 88
MluCI AATT 1 cut(s) 24
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 3 cut(s) 50, 245, 284
MseI TTAA 1 cut(s) 135
MspA1I CMGCKG 1 cut(s) 73
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeII GATC 3 cut(s) 7, 88, 207
NlaIII CATG 1 cut(s) 214
NlaIV GGNNCC 2 cut(s) 181, 272
NmuCI GTSAC 1 cut(s) 247
PfeI GAWTC 1 cut(s) 382
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
PsiI TTATAA 1 cut(s) 243
PspN4I GGNNCC 2 cut(s) 181, 272
PspPI GGNCC 1 cut(s) 227
PsuI RGATCY 2 cut(s) 7, 88
PvuII CAGCTG 1 cut(s) 73
RsaI GTAC 2 cut(s) 158, 233
RsaNI GTAC 2 cut(s) 157, 232
SaqAI TTAA 1 cut(s) 135
Sau3AI GATC 3 cut(s) 7, 88, 207
Sau96I GGNCC 1 cut(s) 227
SchI GAGTC 1 cut(s) 113
SetI ASST 6 cut(s) 18, 75, 181, 237, 249, 276
SinI GGWCC 1 cut(s) 227
Sse9I AATT 1 cut(s) 24
SspI AATATT 1 cut(s) 372
SspMI CTAG 2 cut(s) 59, 92
TaaI ACNGT 1 cut(s) 255
TaiI ACGT 2 cut(s) 18, 249
TasI AATT 1 cut(s) 24
TatI WGTACW 1 cut(s) 156
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 1 cut(s) 258
TseFI GTSAC 1 cut(s) 247
Tsp45I GTSAC 1 cut(s) 247
TspGWI ACGGA 2 cut(s) 145, 219
TspRI CASTG 1 cut(s) 258
VpaK11BI GGWCC 1 cut(s) 227
XbaI TCTAGA 1 cut(s) 91
XmiI GTMKAC 1 cut(s) 257
XspI CTAG 2 cut(s) 59, 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.