RLG00000002287

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004332
Physical Location & Seq
Reverse (-)
31546944 .. 31551612
4669 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002287

Sequence Viewer

Length: 1824 bp
ATGTTTCAGATGTGTACAAAATGCGATGATCGTTGCAGTTGCAGAGATGCTCAACTAGCTTCAGAGGAAAAAAAGAATGCTGAGGATTCAAGCAACTTAGTTTTTCCAAGAAGCTCTTCCCAGCTGTCAGCAATTAGTTTAATGTCTGAAAGTTCTGCACCTGATCTTGTATACAAGAGGAGGAAGTTACAAGAAAACTCTGAGACCATACTTTCAGCATGTGATGTGAAATACCCAAGAACTGGTGATTGCCTTTCGTGTATACATTCTGATACTCCTTCACTTGCTGGTAAGGACCAATATGTTCATTCTCAAAAAGGGGAACTGTCAGCAACTAGTTTAATGTCTGAAAGTACCGCACCTAATCTTGTATACAAGAGGAGGAATTTACAAGAAAATTCTGTCACCATACTATCAGCATGTGATGTGAAAAACCCGAGAACTGGTGATTGCCTTTCGTTTATACATTCTGATGCTCCTTCACTTGCTGGTAAGGATCAATATGTTCATTCTCAAAAAGGGGAACTGTCAGCGATTAGTATAATGTCTGAAAGTACTGCACCTAATCTTGTATACAAGAGGAAGAAGTTACGAGACCCGAGAACTGGTGATTGCCTTTCGTTTATACATTCTGATGCTCCTTCACTTGCTGGTAGGGCATATGTTCATTCTCAAAAAGGGGATCAGAGTGGACCATGTTTATGCAATAGAGCATCTGCTGTTATAAAATCAAAGTCTTTCCATGGGTTTTCTGTTGATGAGGAATTAATTTCTAATGAAGCACCTAAAGCTAGTGTTCCAAAAGGTTTAGAGGTAGACAGTGTAAACGATAGTTGCTCGTCATCAAAGTCAAATATGGAGAACGTTTCCACCTCCAGTAAGACTGAAGTAGATGAAACCGCTGATTGCTCCTCTTCTAGTGCAATCGTTATGGAAGCTGTGGGAGATCTGTCTGAAAAGGATCTCTGCATCTCTATTCTCCGAACCCATGGGCTGCTCGGGGAAGTTCGGATAACTAGGAGCTGTGGTTCTGCTGATGACATTAATACCAGTAGCAGCAAGAGCTGTCGACGGTCATGCAAAATTTGTAATCGTTCAGAAACAGCTCTGAAAATGCTGATTTGTGATAATTGTGAAGAGGCATTTCACATGTCATGCTGCCAGCCACGAATGAAGAAGGTACCTATAGATGAATGGTTCTGTCATTCCTGCTTGAGAGAGAAACATACAATTCTAAAAGAGAGAGTTACTAGAAAATTTCCGAATATCACTAGTGTCATGAGTAGGAATGCATCATCTAAGGATGAGGTAAATCCCATACTATTGATGCTGAGAGACACTGAGCCATATAGGACTAGTGTTCGGGTTGGCAAAGGTTTTCAAGCGGAAGTTGATGACTGGTCAGGTCCAATAAACAATGACGGCATTGGCGAACCGTTGGAATTACATCCTTCGGAGTATGCTAGACTGCATGAGTTGAATTCCAGCAAACCCTCAAAAATTAACTCTATAAGTAACTGGATCCAATGCCGAGAAGTTGTTGATCCTGAAAATGGAATAAGATGTGGAAAGTGGCGCAGGGCTCCTCTTTTTGAAGTCCAAACTAATGACTGGGAGTGCTTCTGCTCTGTTCTGTGGGATCCAAGCCATGCTGATTGTAATGTGCCTCAGGAATTGGAAACAGATCAAGTTCTAAAGCAACTGAAGTATGTTGAGACGCTAAGGCCCCGGCTATCTGCTCAACAGCATAATTTGGGTCGCGCCAACAGCACTGGTGATTTACAAAACCGCAGAATAGATACAAAAAGTATACAAACTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0019899 GO:0070063
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2 PHD

Protein Analysis

608

Amino Acids

67.34

Weight (kDa)

6.46

Isoelectric Point (pI)

53.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 360 - 404 1e-09 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 725
Acc65I GGTACC 1 cut(s) 1180
AccB1I GGYRCC 1 cut(s) 1180
AccB7I CCANNNNNTGG 1 cut(s) 242
AccI GTMKAC 7 cut(s) 171, 262, 372, 573, 816, 1069, 1810
AccII CGCG 1 cut(s) 1761
AciI CCGC 4 cut(s) 357, 900, 1385, 1789
AclI AACGTT 1 cut(s) 864
AclWI GGATC 8 cut(s) 504, 690, 969, 1516, 1529, 1538, 1634, 1647
AcsI RAATTY 5 cut(s) 385, 397, 1083, 1256, 1480
AcuI CTGAAG 3 cut(s) 45, 906, 1724
AfaI GTAC 4 cut(s) 16, 355, 556, 1182
AfiI CCNNNNNNNGG 4 cut(s) 242, 443, 605, 1553
AflIII ACRYGT 1 cut(s) 1149
AgsI TTSAA 4 cut(s) 90, 1382, 1480, 1595
AhlI ACTAGT 3 cut(s) 335, 1271, 1355
AjuI GAANNNNNNNTTGG 2 cut(s) 100, 132
AloI GAACNNNNNNTCC 2 cut(s) 1012, 1044
AluBI AGCT 8 cut(s) 59, 114, 124, 791, 938, 1023, 1065, 1106
AluI AGCT 8 cut(s) 59, 114, 124, 791, 938, 1023, 1065, 1106
Alw26I GTCTC 4 cut(s) 197, 588, 1329, 1709
AlwI GGATC 8 cut(s) 504, 690, 969, 1516, 1529, 1538, 1634, 1647
Ama87I CYCGRG 3 cut(s) 436, 598, 998
AoxI GGCC 1 cut(s) 1724
ApeKI GCWGC 3 cut(s) 994, 1056, 1158
ApoI RAATTY 5 cut(s) 385, 397, 1083, 1256, 1480
AseI ATTAAT 2 cut(s) 767, 1044
Asp700I GAANNNNTTC 1 cut(s) 115
Asp718I GGTACC 1 cut(s) 1180
AspLEI GCGC 2 cut(s) 1578, 1763
AspS9I GGNCC 4 cut(s) 295, 692, 1406, 1725
AsuC2I CCSGG 1 cut(s) 1729
AsuHPI GGTGA 5 cut(s) 257, 397, 458, 620, 1787
AvaI CYCGRG 3 cut(s) 436, 598, 998
AvaII GGWCC 3 cut(s) 295, 692, 1406
AxyI CCTNAGG 1 cut(s) 1668
BamHI GGATCC 2 cut(s) 1521, 1639
BanI GGYRCC 1 cut(s) 1180
BanII GRGCYC 1 cut(s) 1585
BbvCI CCTCAGC 1 cut(s) 81
BbvI GCAGC 3 cut(s) 981, 1068, 1145
BceAI ACGGC 1 cut(s) 1438
BcgI CGANNNNNNTGC 2 cut(s) 1059, 1093
BcnI CCSGG 1 cut(s) 1729
BcoDI GTCTC 4 cut(s) 197, 588, 1329, 1709
BcuI ACTAGT 3 cut(s) 335, 1271, 1355
BfaI CTAG 9 cut(s) 56, 336, 792, 918, 1017, 1251, 1272, 1356, 1464
BfmI CTRYAG 1 cut(s) 1185
BglII AGATCT 1 cut(s) 946
BisI GCNGC 3 cut(s) 995, 1057, 1159
BlsI GCNGC 3 cut(s) 996, 1058, 1160
BmcAI AGTACT 1 cut(s) 556
Bme1390I CCNGG 1 cut(s) 1729
Bme18I GGWCC 3 cut(s) 295, 692, 1406
BmeT110I CYCGRG 3 cut(s) 436, 598, 998
BmgT120I GGNCC 4 cut(s) 295, 692, 1406, 1725
BmiI GGNNCC 5 cut(s) 1182, 1523, 1584, 1641, 1727
BmrFI CCNGG 1 cut(s) 1729
BmrI ACTGGG 1 cut(s) 1621
BmsI GCATC 7 cut(s) 37, 463, 625, 722, 978, 1301, 1317
BmuI ACTGGG 1 cut(s) 1621
BpmI CTGGAG 1 cut(s) 859
Bpu10I CCTNAGC 2 cut(s) 81, 1721
BpuEI CTTGAG 1 cut(s) 1234
BpuMI CCSGG 1 cut(s) 1729
BsaI GGTCTC 2 cut(s) 197, 588
BsaJI CCNNGG 3 cut(s) 742, 988, 1727
BsaXI ACNNNNNCTCC 2 cut(s) 1012, 1042
Bsc4I CCNNNNNNNGG 4 cut(s) 242, 443, 605, 1553
Bse1I ACTGG 9 cut(s) 247, 448, 610, 876, 1050, 1403, 1523, 1616, 1777
Bse21I CCTNAGG 1 cut(s) 1668
BseDI CCNNGG 3 cut(s) 742, 988, 1727
BseGI GGATG 2 cut(s) 1309, 1447
BseLI CCNNNNNNNGG 4 cut(s) 242, 443, 605, 1553
BseMII CTCAG 5 cut(s) 72, 192, 1322, 1332, 1682
BseNI ACTGG 9 cut(s) 247, 448, 610, 876, 1050, 1403, 1523, 1616, 1777
BseRI GAGGAG 4 cut(s) 193, 394, 901, 1575
BseXI GCAGC 3 cut(s) 981, 1068, 1145
BseYI CCCAGC 1 cut(s) 120
BsgI GTGCAG 2 cut(s) 141, 543
Bsh1236I CGCG 1 cut(s) 1761
BshFI GGCC 1 cut(s) 1726
BshNI GGYRCC 1 cut(s) 1180
BsiHKCI CYCGRG 3 cut(s) 436, 598, 998
BsiSI CCGG 1 cut(s) 1729
BslI CCNNNNNNNGG 4 cut(s) 242, 443, 605, 1553
BsmAI GTCTC 4 cut(s) 197, 588, 1329, 1709
BsmBI CGTCTC 1 cut(s) 1709
BsmI GAATGC 2 cut(s) 82, 1294
BsnI GGCC 1 cut(s) 1726
Bso31I GGTCTC 2 cut(s) 197, 588
BsoBI CYCGRG 3 cut(s) 436, 598, 998
Bsp1286I GDGCHC 1 cut(s) 1585
Bsp1407I TGTACA 1 cut(s) 14
Bsp19I CCATGG 2 cut(s) 742, 988
BspACI CCGC 4 cut(s) 357, 900, 1385, 1789
BspANI GGCC 1 cut(s) 1726
BspCNI CTCAG 5 cut(s) 73, 193, 1323, 1333, 1681
BspFNI CGCG 1 cut(s) 1761
BspHI TCATGA 1 cut(s) 1278
BspLI GGNNCC 5 cut(s) 1182, 1523, 1584, 1641, 1727
BspPI GGATC 8 cut(s) 504, 690, 969, 1516, 1529, 1538, 1634, 1647
BspQI GCTCTTC 1 cut(s) 121
BspT107I GGYRCC 1 cut(s) 1180
BspTNI GGTCTC 2 cut(s) 197, 588
BsrGI TGTACA 1 cut(s) 14
BsrI ACTGG 9 cut(s) 247, 448, 610, 876, 1050, 1403, 1523, 1616, 1777
BssECI CCNNGG 3 cut(s) 742, 988, 1727
BssNAI GTATAC 5 cut(s) 172, 263, 373, 574, 1811
BssT1I CCWWGG 2 cut(s) 742, 988
Bst1107I GTATAC 5 cut(s) 172, 263, 373, 574, 1811
Bst4CI ACNGT 5 cut(s) 327, 528, 821, 1074, 1437
Bst6I CTCTTC 3 cut(s) 121, 919, 1131
BstAUI TGTACA 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 1163
BstDEI CTNAG 8 cut(s) 81, 97, 201, 1299, 1331, 1341, 1668, 1721
BstDSI CCRYGG 2 cut(s) 742, 988
BstF5I GGATG 2 cut(s) 1309, 1447
BstFNI CGCG 1 cut(s) 1761
BstHHI GCGC 2 cut(s) 1578, 1763
BstMAI GTCTC 4 cut(s) 197, 588, 1329, 1709
BstMWI GCNNNNNNNGC 5 cut(s) 56, 656, 788, 1062, 1767
BstNSI RCATGY 3 cut(s) 222, 423, 1153
BstSCI CCNGG 1 cut(s) 1727
BstSFI CTRYAG 1 cut(s) 1185
BstUI CGCG 1 cut(s) 1761
BstV1I GCAGC 3 cut(s) 981, 1068, 1145
BstX2I RGATCY 4 cut(s) 946, 961, 1521, 1639
BstYI RGATCY 4 cut(s) 946, 961, 1521, 1639
BstZ17I GTATAC 5 cut(s) 172, 263, 373, 574, 1811
Bsu36I CCTNAGG 1 cut(s) 1668
BsuRI GGCC 1 cut(s) 1726
BtgI CCRYGG 2 cut(s) 742, 988
BtgZI GCGATG 1 cut(s) 39
BtsCI GGATG 2 cut(s) 1309, 1447
BtsIMutI CAGTG 3 cut(s) 826, 1338, 1770
Cac8I GCNNGC 1 cut(s) 1163
CciI TCATGA 1 cut(s) 1278
CfoI GCGC 2 cut(s) 1578, 1763
Cfr13I GGNCC 4 cut(s) 295, 692, 1406, 1725
CseI GACGC 1 cut(s) 1726
Csp6I GTAC 4 cut(s) 15, 354, 555, 1181
CviQI GTAC 4 cut(s) 15, 354, 555, 1181
DdeI CTNAG 8 cut(s) 81, 97, 201, 1299, 1331, 1341, 1668, 1721
Eam1104I CTCTTC 3 cut(s) 121, 919, 1131
EarI CTCTTC 3 cut(s) 121, 919, 1131
Eco130I CCWWGG 2 cut(s) 742, 988
Eco24I GRGCYC 1 cut(s) 1585
Eco31I GGTCTC 2 cut(s) 197, 588
Eco47I GGWCC 3 cut(s) 295, 692, 1406
Eco57I CTGAAG 3 cut(s) 45, 906, 1724
Eco81I CCTNAGG 1 cut(s) 1668
Eco88I CYCGRG 3 cut(s) 436, 598, 998
EcoO109I RGGNCCY 1 cut(s) 1725
EcoRI GAATTC 1 cut(s) 1480
EcoT14I CCWWGG 2 cut(s) 742, 988
EcoT22I ATGCAT 1 cut(s) 1294
EcoT38I GRGCYC 1 cut(s) 1585
ErhI CCWWGG 2 cut(s) 742, 988
Esp3I CGTCTC 1 cut(s) 1709
FalI AAGNNNNNCTT 2 cut(s) 100, 132
FauNDI CATATG 1 cut(s) 661
FblI GTMKAC 7 cut(s) 171, 262, 372, 573, 816, 1069, 1810
Fnu4HI GCNGC 3 cut(s) 995, 1057, 1159
FokI GGATG 2 cut(s) 1316, 1434
FriOI GRGCYC 1 cut(s) 1585
Fsp4HI GCNGC 3 cut(s) 995, 1057, 1159
FspBI CTAG 9 cut(s) 56, 336, 792, 918, 1017, 1251, 1272, 1356, 1464
GlaI GCGC 2 cut(s) 1577, 1762
GluI GCNGC 3 cut(s) 995, 1057, 1159
GsaI CCCAGC 1 cut(s) 124
GsuI CTGGAG 1 cut(s) 859
HaeIII GGCC 1 cut(s) 1726
HapII CCGG 1 cut(s) 1729
HgaI GACGC 1 cut(s) 1726
HhaI GCGC 2 cut(s) 1578, 1763
Hin6I GCGC 2 cut(s) 1576, 1761
HinP1I GCGC 2 cut(s) 1576, 1761
HincII GTYRAC 1 cut(s) 1070
HindII GTYRAC 1 cut(s) 1070
HinfI GANTC 1 cut(s) 86
HpaII CCGG 1 cut(s) 1729
HphI GGTGA 5 cut(s) 257, 397, 458, 620, 1787
Hpy188III TCNNGA 3 cut(s) 1279, 1547, 1670
Hpy99I CGWCG 1 cut(s) 1074
HpyAV CCTTC 5 cut(s) 288, 489, 651, 1171, 1461
HpyCH4III ACNGT 5 cut(s) 327, 528, 821, 1074, 1437
HpyCH4IV ACGT 1 cut(s) 864
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 656, 788, 1062, 1767
HpyF3I CTNAG 8 cut(s) 81, 97, 201, 1299, 1331, 1341, 1668, 1721
HpySE526I ACGT 1 cut(s) 864
HspAI GCGC 2 cut(s) 1576, 1761
KpnI GGTACC 1 cut(s) 1184
LguI GCTCTTC 1 cut(s) 121
LmnI GCTCC 5 cut(s) 481, 643, 914, 1020, 1588
Lsp1109I GCAGC 3 cut(s) 981, 1068, 1145
LweI GCATC 7 cut(s) 37, 463, 625, 722, 978, 1301, 1317
MaeI CTAG 9 cut(s) 56, 336, 792, 918, 1017, 1251, 1272, 1356, 1464
MaeII ACGT 1 cut(s) 864
MaeIII GTNAC 5 cut(s) 186, 403, 588, 1246, 1514
MboII GAAGA 5 cut(s) 108, 595, 906, 1148, 1186
MflI RGATCY 4 cut(s) 946, 961, 1521, 1639
MhlI GDGCHC 1 cut(s) 1585
MmeI TCCRAC 1 cut(s) 1419
Mph1103I ATGCAT 1 cut(s) 1294
MroXI GAANNNNTTC 1 cut(s) 115
MseI TTAA 5 cut(s) 140, 341, 767, 1044, 1503
MslI CAYNNNNRTG 3 cut(s) 471, 633, 700
MspA1I CMGCKG 2 cut(s) 124, 902
MspI CCGG 1 cut(s) 1729
MspR9I CCNGG 1 cut(s) 1729
Mva1269I GAATGC 2 cut(s) 82, 1294
MvnI CGCG 1 cut(s) 1761
MwoI GCNNNNNNNGC 5 cut(s) 56, 656, 788, 1062, 1767
NciI CCSGG 1 cut(s) 1729
NcoI CCATGG 2 cut(s) 742, 988
NdeI CATATG 1 cut(s) 661
NlaIV GGNNCC 5 cut(s) 1182, 1523, 1584, 1641, 1727
NmeAIII GCCGAG 1 cut(s) 1556
NmuCI GTSAC 1 cut(s) 403
NsiI ATGCAT 1 cut(s) 1294
NspI RCATGY 3 cut(s) 222, 423, 1153
PagI TCATGA 1 cut(s) 1278
PciI ACATGT 1 cut(s) 1149
PciSI GCTCTTC 1 cut(s) 121
PcsI WCGNNNNNNNCGW 1 cut(s) 1428
PctI GAATGC 2 cut(s) 82, 1294
PdmI GAANNNNTTC 1 cut(s) 115
PfeI GAWTC 1 cut(s) 86
PflMI CCANNNNNTGG 1 cut(s) 242
PkrI GCNGC 3 cut(s) 996, 1058, 1160
PscI ACATGT 1 cut(s) 1149
PshBI ATTAAT 2 cut(s) 767, 1044
PsiI TTATAA 1 cut(s) 725
Psp1406I AACGTT 1 cut(s) 864
PspFI CCCAGC 1 cut(s) 120
PspN4I GGNNCC 5 cut(s) 1182, 1523, 1584, 1641, 1727
PspPI GGNCC 4 cut(s) 295, 692, 1406, 1725
PsuI RGATCY 4 cut(s) 946, 961, 1521, 1639
PvuII CAGCTG 1 cut(s) 124
RsaI GTAC 4 cut(s) 16, 355, 556, 1182
RsaNI GTAC 4 cut(s) 15, 354, 555, 1181
RseI CAYNNNNRTG 3 cut(s) 471, 633, 700
SalI GTCGAC 1 cut(s) 1068
SapI GCTCTTC 1 cut(s) 121
SaqAI TTAA 5 cut(s) 140, 341, 767, 1044, 1503
SatI GCNGC 3 cut(s) 995, 1057, 1159
Sau96I GGNCC 4 cut(s) 295, 692, 1406, 1725
ScaI AGTACT 1 cut(s) 556
ScrFI CCNGG 1 cut(s) 1729
SduI GDGCHC 1 cut(s) 1585
SfaNI GCATC 7 cut(s) 37, 463, 625, 722, 978, 1301, 1317
SfcI CTRYAG 1 cut(s) 1185
SinI GGWCC 3 cut(s) 295, 692, 1406
SmiMI CAYNNNNRTG 3 cut(s) 471, 633, 700
SmlI CTYRAG 1 cut(s) 1213
SmoI CTYRAG 1 cut(s) 1213
SpeI ACTAGT 3 cut(s) 335, 1271, 1355
SsiI CCGC 4 cut(s) 357, 900, 1385, 1789
SspMI CTAG 9 cut(s) 56, 336, 792, 918, 1017, 1251, 1272, 1356, 1464
StyD4I CCNGG 1 cut(s) 1727
StyI CCWWGG 2 cut(s) 742, 988
TaaI ACNGT 5 cut(s) 327, 528, 821, 1074, 1437
TaiI ACGT 1 cut(s) 867
TaqI TCGA 1 cut(s) 1069
TatI WGTACW 2 cut(s) 14, 554
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 5 cut(s) 140, 341, 767, 1044, 1503
Tru9I TTAA 5 cut(s) 140, 341, 767, 1044, 1503
TscAI CASTG 3 cut(s) 826, 1345, 1777
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 3 cut(s) 994, 1056, 1158
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 7 cut(s) 296, 497, 656, 792, 909, 1187, 1206
TspRI CASTG 3 cut(s) 826, 1345, 1777
Van91I CCANNNNNTGG 1 cut(s) 242
VpaK11BI GGWCC 3 cut(s) 295, 692, 1406
VspI ATTAAT 2 cut(s) 767, 1044
XapI RAATTY 5 cut(s) 385, 397, 1083, 1256, 1480
XceI RCATGY 3 cut(s) 222, 423, 1153
XmiI GTMKAC 7 cut(s) 171, 262, 372, 573, 816, 1069, 1810
XmnI GAANNNNTTC 1 cut(s) 115
XspI CTAG 9 cut(s) 56, 336, 792, 918, 1017, 1251, 1272, 1356, 1464
ZrmI AGTACT 1 cut(s) 556
Zsp2I ATGCAT 1 cut(s) 1294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.