Rh7DG324700

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004332
Physical Location & Seq
Forward (+)
39125599 .. 39133549
7951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG324700.1

Sequence Viewer

Length: 1848 bp
ATGTTGATAGAAACTTTCCTTTCCAGTTCAATTGAAGCTGCTCTATTTTGTCTATCTAACTTTGGGTTACAAGATGTCTTATGTGATTGGATGCCTGGTGCTGAAACTTGGCAGATGTGTACAAAATGCGATGATCGTTGCAGTTGCAGAGATGCTCAACTAGCTTCAGAGGAAAAAAAGAATGCTGAGGATTCAAACAACTTAGTTTTTCCAAGAAGCTCTTCCCAGCTGTCAGCAATTAGTTTAATGTCTGAAAGTTCTGCACCTGATCTTGTATACAAGAGGAGGAAGTTACAAGAAAACTCTGAGACCATACTTTCAGCATGTGATGTGAAATACCCAAGAACTGGTGATTGCCTTTCATGTATACATTCTGATACTCCTTCACTTACTGGTAAGGACCAATATGTTCATTCTCAAAAAGGGGAACTGTCAGCAACTAGTTTAATGTCTGAAAGTACTGCACCTAATCTTGTATACAAGAGGAGGAATTTACGAGAAAATTCTGTCACCATACTATCAGCATGTGATGTGAAAAACCCGAGAACTGGTGATTGCTTTTCGTTTATACATTCTGATGCTCCTTCACTTGCTGGTAAGGATCAATATGTTCATTCTCAAAAAGGGGAACTGTCAGCGATTAGTATAATGTCTGATAGTACTGCACCTAATCTTGTATACAAGAGGAAGAAGTTACGAGACCCGAGAACTGGTGATTGCCTTTCGTTTATACATTCTGATGCTCCTTCACTTGCTGGTAAGGCATATGTTCATTCTCAAAAAGGGGATCAGAATGGACCATGTTTATGCAATAGGGCATCTGCTGTTATAAAATCAAAGTCTTTTCATGGGTTTTCTGTTGATGAGGAATTAATTTCTAATGAAGCACCTAAAGCTAGTGTTCCAAAAGGTTTAGAGGTAGACAGTGTAAACGATAGTTGCTCGTCATCAAAGTCAAATATGGAGAACGTTTCCACCTCCAATAAGACTGAAGTAGATGAAACCGCTGATTGCTCCTCTTCTAGTGCAATTGTTACGGAAGCTGTGGGAGATCTGTCTGAAAAGGATCTCTGCATCTCTATTCTCAGAACCCATGGGCTGATCGGGGAAGTTCGGATAACTAGGAGCTGTGGTTCTGCTGATGACATTAATACCAGTAGCAGCAAGAGCTGTCGACGGTCATGCAAAATTTGTAATCGTTCAGAAACTACTCTGAAAATGCTGATTTGTGATACTTGTGAAGAGGCATTTCACATGTCATGCTGCCAGCCACGAATAAAGAAGGTACCTATAGATGAATGGTTCTGTCATTCCTGCTTGAGAGAGAAACATACAATTCTAAAAGAGAGAGTTACTAGAAAATTTCCGAATATCACTAGTGTCATGAGTAGGAATGCGTCATCTAAGGATGAGGTAAATCCCATACTATTGATGCTGAGAGACACTGAGCCATATAGAACTAGTGTTCGTGTTGGCAAAGGTTTTCAAGCGGAAGTTGATGACTGGTCAGGTCCAATAAACAATGACGGCATTGGCGAACCATTGGAATTACATCCTTCGGAGTATGCTAGACTGCATGAGTTGAATTCCAGCAAACCCTCAAAAATTAACTCTATAAGTAACTGGATCCAATGCCGAGAAGTTGTTGATCCTGAAAATGGAATAAGATGTGGAAAGTGGCGCAGGGCTCCTCTTTTAGAAGTCCAAACTAATGACTGGGAGTGCTTCTGCTCTGTTCTGTGGGATCCAAGCCATGCTGATTGTAATGTGCCTCAGGAATTGGAAACAGATCAAGTTCTAAAGCAACTGAAGTATGTCGAGACGGTATGTTTTAGTCACTTCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0019899 GO:0070063
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2 PHD

Protein Analysis

615

Amino Acids

68.27

Weight (kDa)

5.81

Isoelectric Point (pI)

51.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 395 - 439 1.1e-09 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 830
Acc65I GGTACC 1 cut(s) 1285
AccB1I GGYRCC 1 cut(s) 1285
AccB7I CCANNNNNTGG 1 cut(s) 347
AccI GTMKAC 6 cut(s) 276, 367, 477, 678, 921, 1174
AciI CCGC 2 cut(s) 1005, 1490
AclI AACGTT 1 cut(s) 969
AclWI GGATC 8 cut(s) 609, 795, 1074, 1621, 1634, 1643, 1739, 1752
AcsI RAATTY 5 cut(s) 490, 502, 1188, 1361, 1585
AcuI CTGAAG 3 cut(s) 150, 1011, 1829
AfaI GTAC 4 cut(s) 121, 460, 661, 1287
AfiI CCNNNNNNNGG 4 cut(s) 347, 548, 710, 1658
AflIII ACRYGT 1 cut(s) 1254
AgsI TTSAA 5 cut(s) 30, 35, 195, 1487, 1585
AhlI ACTAGT 3 cut(s) 440, 1376, 1460
AjnI CCWGG 1 cut(s) 94
AjuI GAANNNNNNNTTGG 2 cut(s) 205, 237
AloI GAACNNNNNNTCC 2 cut(s) 1117, 1149
AluBI AGCT 8 cut(s) 38, 164, 219, 229, 896, 1043, 1128, 1170
AluI AGCT 8 cut(s) 38, 164, 219, 229, 896, 1043, 1128, 1170
Alw26I GTCTC 4 cut(s) 302, 693, 1434, 1814
AlwI GGATC 8 cut(s) 609, 795, 1074, 1621, 1634, 1643, 1739, 1752
Ama87I CYCGRG 2 cut(s) 541, 703
ApeKI GCWGC 3 cut(s) 38, 1161, 1263
ApoI RAATTY 5 cut(s) 490, 502, 1188, 1361, 1585
AseI ATTAAT 2 cut(s) 872, 1149
Asp700I GAANNNNTTC 1 cut(s) 220
Asp718I GGTACC 1 cut(s) 1285
AspLEI GCGC 1 cut(s) 1683
AspS9I GGNCC 3 cut(s) 400, 797, 1511
AsuHPI GGTGA 4 cut(s) 362, 502, 563, 725
AvaI CYCGRG 2 cut(s) 541, 703
AvaII GGWCC 3 cut(s) 400, 797, 1511
AxyI CCTNAGG 1 cut(s) 1773
BamHI GGATCC 2 cut(s) 1626, 1744
BanI GGYRCC 1 cut(s) 1285
BanII GRGCYC 1 cut(s) 1690
BbvCI CCTCAGC 1 cut(s) 186
BbvI GCAGC 3 cut(s) 25, 1173, 1250
BceAI ACGGC 1 cut(s) 1543
BcgI CGANNNNNNTGC 2 cut(s) 1164, 1198
BciT130I CCWGG 1 cut(s) 96
BcoDI GTCTC 4 cut(s) 302, 693, 1434, 1814
BcuI ACTAGT 3 cut(s) 440, 1376, 1460
BfaI CTAG 9 cut(s) 161, 441, 897, 1023, 1122, 1356, 1377, 1461, 1569
BfmI CTRYAG 1 cut(s) 1290
BglII AGATCT 1 cut(s) 1051
BisI GCNGC 3 cut(s) 39, 1162, 1264
BlsI GCNGC 3 cut(s) 40, 1163, 1265
BmcAI AGTACT 2 cut(s) 460, 661
Bme1390I CCNGG 1 cut(s) 96
Bme18I GGWCC 3 cut(s) 400, 797, 1511
BmeT110I CYCGRG 2 cut(s) 541, 703
BmgT120I GGNCC 3 cut(s) 400, 797, 1511
BmiI GGNNCC 4 cut(s) 1287, 1628, 1689, 1746
BmrFI CCNGG 1 cut(s) 96
BmrI ACTGGG 1 cut(s) 1726
BmsI GCATC 7 cut(s) 81, 142, 568, 730, 827, 1083, 1422
BmuI ACTGGG 1 cut(s) 1726
Bpu10I CCTNAGC 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 1339
BsaI GGTCTC 2 cut(s) 302, 693
BsaJI CCNNGG 1 cut(s) 1093
BsaXI ACNNNNNCTCC 2 cut(s) 1117, 1147
Bsc4I CCNNNNNNNGG 4 cut(s) 347, 548, 710, 1658
Bse1I ACTGG 9 cut(s) 24, 352, 397, 553, 715, 1155, 1508, 1628, 1721
Bse21I CCTNAGG 1 cut(s) 1773
BseBI CCWGG 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 1093
BseGI GGATG 3 cut(s) 96, 1414, 1552
BseLI CCNNNNNNNGG 4 cut(s) 347, 548, 710, 1658
BseMII CTCAG 6 cut(s) 177, 297, 1099, 1427, 1437, 1787
BseNI ACTGG 9 cut(s) 24, 352, 397, 553, 715, 1155, 1508, 1628, 1721
BseRI GAGGAG 4 cut(s) 298, 499, 1006, 1680
BseXI GCAGC 3 cut(s) 25, 1173, 1250
BseYI CCCAGC 1 cut(s) 225
BsgI GTGCAG 3 cut(s) 246, 447, 648
BshNI GGYRCC 1 cut(s) 1285
BsiHKCI CYCGRG 2 cut(s) 541, 703
BslI CCNNNNNNNGG 4 cut(s) 347, 548, 710, 1658
BsmAI GTCTC 4 cut(s) 302, 693, 1434, 1814
BsmBI CGTCTC 1 cut(s) 1814
BsmI GAATGC 2 cut(s) 187, 1399
Bso31I GGTCTC 2 cut(s) 302, 693
BsoBI CYCGRG 2 cut(s) 541, 703
Bsp1286I GDGCHC 1 cut(s) 1690
Bsp1407I TGTACA 1 cut(s) 119
Bsp19I CCATGG 1 cut(s) 1093
BspACI CCGC 2 cut(s) 1005, 1490
BspCNI CTCAG 6 cut(s) 178, 298, 1098, 1428, 1438, 1786
BspHI TCATGA 1 cut(s) 1383
BspLI GGNNCC 4 cut(s) 1287, 1628, 1689, 1746
BspPI GGATC 8 cut(s) 609, 795, 1074, 1621, 1634, 1643, 1739, 1752
BspQI GCTCTTC 1 cut(s) 226
BspT107I GGYRCC 1 cut(s) 1285
BspTNI GGTCTC 2 cut(s) 302, 693
BsrGI TGTACA 1 cut(s) 119
BsrI ACTGG 9 cut(s) 24, 352, 397, 553, 715, 1155, 1508, 1628, 1721
BssECI CCNNGG 1 cut(s) 1093
BssNAI GTATAC 4 cut(s) 277, 368, 478, 679
BssT1I CCWWGG 1 cut(s) 1093
Bst1107I GTATAC 4 cut(s) 277, 368, 478, 679
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 5 cut(s) 432, 633, 926, 1179, 1825
Bst6I CTCTTC 3 cut(s) 226, 1024, 1236
BstAUI TGTACA 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 1268
BstDEI CTNAG 8 cut(s) 186, 202, 306, 1085, 1404, 1436, 1446, 1773
BstDSI CCRYGG 1 cut(s) 1093
BstF5I GGATG 3 cut(s) 96, 1414, 1552
BstHHI GCGC 1 cut(s) 1683
BstMAI GTCTC 4 cut(s) 302, 693, 1434, 1814
BstMWI GCNNNNNNNGC 4 cut(s) 161, 761, 893, 1167
BstNI CCWGG 1 cut(s) 96
BstNSI RCATGY 3 cut(s) 327, 528, 1258
BstSCI CCNGG 1 cut(s) 94
BstSFI CTRYAG 1 cut(s) 1290
BstV1I GCAGC 3 cut(s) 25, 1173, 1250
BstX2I RGATCY 4 cut(s) 1051, 1066, 1626, 1744
BstYI RGATCY 4 cut(s) 1051, 1066, 1626, 1744
BstZ17I GTATAC 4 cut(s) 277, 368, 478, 679
Bsu36I CCTNAGG 1 cut(s) 1773
BtgI CCRYGG 1 cut(s) 1093
BtgZI GCGATG 1 cut(s) 144
BtsCI GGATG 3 cut(s) 96, 1414, 1552
BtsIMutI CAGTG 2 cut(s) 931, 1443
Cac8I GCNNGC 1 cut(s) 1268
CciI TCATGA 1 cut(s) 1383
CfoI GCGC 1 cut(s) 1683
Cfr13I GGNCC 3 cut(s) 400, 797, 1511
CseI GACGC 1 cut(s) 1386
Csp6I GTAC 4 cut(s) 120, 459, 660, 1286
CviQI GTAC 4 cut(s) 120, 459, 660, 1286
DdeI CTNAG 8 cut(s) 186, 202, 306, 1085, 1404, 1436, 1446, 1773
Eam1104I CTCTTC 3 cut(s) 226, 1024, 1236
EarI CTCTTC 3 cut(s) 226, 1024, 1236
Eco130I CCWWGG 1 cut(s) 1093
Eco24I GRGCYC 1 cut(s) 1690
Eco31I GGTCTC 2 cut(s) 302, 693
Eco47I GGWCC 3 cut(s) 400, 797, 1511
Eco57I CTGAAG 3 cut(s) 150, 1011, 1829
Eco81I CCTNAGG 1 cut(s) 1773
Eco88I CYCGRG 2 cut(s) 541, 703
EcoRI GAATTC 1 cut(s) 1585
EcoRII CCWGG 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 1093
EcoT38I GRGCYC 1 cut(s) 1690
ErhI CCWWGG 1 cut(s) 1093
Esp3I CGTCTC 1 cut(s) 1814
FalI AAGNNNNNCTT 2 cut(s) 205, 237
FauNDI CATATG 1 cut(s) 766
FblI GTMKAC 6 cut(s) 276, 367, 477, 678, 921, 1174
Fnu4HI GCNGC 3 cut(s) 39, 1162, 1264
FokI GGATG 3 cut(s) 103, 1421, 1539
FriOI GRGCYC 1 cut(s) 1690
Fsp4HI GCNGC 3 cut(s) 39, 1162, 1264
FspBI CTAG 9 cut(s) 161, 441, 897, 1023, 1122, 1356, 1377, 1461, 1569
GlaI GCGC 1 cut(s) 1682
GluI GCNGC 3 cut(s) 39, 1162, 1264
GsaI CCCAGC 1 cut(s) 229
HgaI GACGC 1 cut(s) 1386
HhaI GCGC 1 cut(s) 1683
Hin6I GCGC 1 cut(s) 1681
HinP1I GCGC 1 cut(s) 1681
HincII GTYRAC 1 cut(s) 1175
HindII GTYRAC 1 cut(s) 1175
HinfI GANTC 1 cut(s) 191
HphI GGTGA 4 cut(s) 362, 502, 563, 725
Hpy166II GTNNAC 8 cut(s) 120, 277, 368, 478, 679, 922, 931, 1175
Hpy188III TCNNGA 4 cut(s) 1384, 1652, 1775, 1819
Hpy8I GTNNAC 8 cut(s) 120, 277, 368, 478, 679, 922, 931, 1175
Hpy99I CGWCG 1 cut(s) 1179
HpyAV CCTTC 5 cut(s) 393, 594, 756, 1276, 1566
HpyCH4III ACNGT 5 cut(s) 432, 633, 926, 1179, 1825
HpyCH4IV ACGT 1 cut(s) 969
HpyF10VI GCNNNNNNNGC 4 cut(s) 161, 761, 893, 1167
HpyF3I CTNAG 8 cut(s) 186, 202, 306, 1085, 1404, 1436, 1446, 1773
HpySE526I ACGT 1 cut(s) 969
HspAI GCGC 1 cut(s) 1681
KpnI GGTACC 1 cut(s) 1289
LguI GCTCTTC 1 cut(s) 226
LmnI GCTCC 5 cut(s) 586, 748, 1019, 1125, 1693
Lsp1109I GCAGC 3 cut(s) 25, 1173, 1250
LweI GCATC 7 cut(s) 81, 142, 568, 730, 827, 1083, 1422
MaeI CTAG 9 cut(s) 161, 441, 897, 1023, 1122, 1356, 1377, 1461, 1569
MaeII ACGT 1 cut(s) 969
MaeIII GTNAC 8 cut(s) 66, 291, 508, 693, 1033, 1351, 1619, 1835
MboII GAAGA 4 cut(s) 213, 700, 1011, 1253
MfeI CAATTG 2 cut(s) 30, 1029
MflI RGATCY 4 cut(s) 1051, 1066, 1626, 1744
MhlI GDGCHC 1 cut(s) 1690
MroXI GAANNNNTTC 1 cut(s) 220
MseI TTAA 5 cut(s) 245, 446, 872, 1149, 1608
MslI CAYNNNNRTG 3 cut(s) 576, 738, 805
MspA1I CMGCKG 2 cut(s) 229, 1007
MspR9I CCNGG 1 cut(s) 96
MunI CAATTG 2 cut(s) 30, 1029
Mva1269I GAATGC 2 cut(s) 187, 1399
MvaI CCWGG 1 cut(s) 96
MwoI GCNNNNNNNGC 4 cut(s) 161, 761, 893, 1167
NcoI CCATGG 1 cut(s) 1093
NdeI CATATG 1 cut(s) 766
NlaIV GGNNCC 4 cut(s) 1287, 1628, 1689, 1746
NmeAIII GCCGAG 1 cut(s) 1661
NmuCI GTSAC 2 cut(s) 508, 1835
NspI RCATGY 3 cut(s) 327, 528, 1258
PagI TCATGA 1 cut(s) 1383
PciI ACATGT 1 cut(s) 1254
PciSI GCTCTTC 1 cut(s) 226
PcsI WCGNNNNNNNCGW 1 cut(s) 1533
PctI GAATGC 2 cut(s) 187, 1399
PdmI GAANNNNTTC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 191
PflMI CCANNNNNTGG 1 cut(s) 347
PkrI GCNGC 3 cut(s) 40, 1163, 1265
PscI ACATGT 1 cut(s) 1254
PshBI ATTAAT 2 cut(s) 872, 1149
PsiI TTATAA 1 cut(s) 830
Psp1406I AACGTT 1 cut(s) 969
Psp6I CCWGG 1 cut(s) 94
PspFI CCCAGC 1 cut(s) 225
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 4 cut(s) 1287, 1628, 1689, 1746
PspPI GGNCC 3 cut(s) 400, 797, 1511
PsuI RGATCY 4 cut(s) 1051, 1066, 1626, 1744
PvuII CAGCTG 1 cut(s) 229
RsaI GTAC 4 cut(s) 121, 460, 661, 1287
RsaNI GTAC 4 cut(s) 120, 459, 660, 1286
RseI CAYNNNNRTG 3 cut(s) 576, 738, 805
SalI GTCGAC 1 cut(s) 1173
SapI GCTCTTC 1 cut(s) 226
SaqAI TTAA 5 cut(s) 245, 446, 872, 1149, 1608
SatI GCNGC 3 cut(s) 39, 1162, 1264
Sau96I GGNCC 3 cut(s) 400, 797, 1511
ScaI AGTACT 2 cut(s) 460, 661
ScrFI CCNGG 1 cut(s) 96
SduI GDGCHC 1 cut(s) 1690
SfaNI GCATC 7 cut(s) 81, 142, 568, 730, 827, 1083, 1422
SfcI CTRYAG 1 cut(s) 1290
SinI GGWCC 3 cut(s) 400, 797, 1511
SmiMI CAYNNNNRTG 3 cut(s) 576, 738, 805
SmlI CTYRAG 1 cut(s) 1318
SmoI CTYRAG 1 cut(s) 1318
SpeI ACTAGT 3 cut(s) 440, 1376, 1460
SsiI CCGC 2 cut(s) 1005, 1490
SspMI CTAG 9 cut(s) 161, 441, 897, 1023, 1122, 1356, 1377, 1461, 1569
StyD4I CCNGG 1 cut(s) 94
StyI CCWWGG 1 cut(s) 1093
TaaI ACNGT 5 cut(s) 432, 633, 926, 1179, 1825
TaiI ACGT 1 cut(s) 972
TaqI TCGA 2 cut(s) 1174, 1818
TatI WGTACW 3 cut(s) 119, 458, 659
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 5 cut(s) 245, 446, 872, 1149, 1608
Tru9I TTAA 5 cut(s) 245, 446, 872, 1149, 1608
TscAI CASTG 2 cut(s) 931, 1450
TseFI GTSAC 2 cut(s) 508, 1835
TseI GCWGC 3 cut(s) 38, 1161, 1263
Tsp45I GTSAC 2 cut(s) 508, 1835
TspDTI ATGAA 8 cut(s) 351, 401, 602, 761, 836, 897, 1014, 1311
TspGWI ACGGA 1 cut(s) 1052
TspRI CASTG 2 cut(s) 931, 1450
Van91I CCANNNNNTGG 1 cut(s) 347
VpaK11BI GGWCC 3 cut(s) 400, 797, 1511
VspI ATTAAT 2 cut(s) 872, 1149
XapI RAATTY 5 cut(s) 490, 502, 1188, 1361, 1585
XceI RCATGY 3 cut(s) 327, 528, 1258
XmiI GTMKAC 6 cut(s) 276, 367, 477, 678, 921, 1174
XmnI GAANNNNTTC 1 cut(s) 220
XspI CTAG 9 cut(s) 161, 441, 897, 1023, 1122, 1356, 1377, 1461, 1569
ZrmI AGTACT 2 cut(s) 460, 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.