Rh7AG328300

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0004332
Physical Location & Seq
Forward (+)
37734981 .. 37743085
8105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG328300.1

Sequence Viewer

Length: 1689 bp
ATGTTGATAGAAACTTTCCTTTCCAGTTCAATTGAAGCTGCTCTATTTTGTCTATCTAACTTTGGGTTACAAGATGTCTTATGTGATTGGATGCCTGGTGCTGAAACTTGGCAGATGTGTACAAAATGCGATGATCGTTGCAGTTGCAGAGATGCTCAACTAGCTTCAGAGGAAAAAAAGAATGCTGAGGATTCAAGCAACTTAGTTTTTCCAAGAAGCTCTTCCCAGCTGTCAGCAATTAGTTTAATGTCTGAAAGTTCTGCACCTGATCTTGTATACAAGAGGAGGAAGTTACAAGAAAACTCTGAGACCATACTTTCAGCATGTGATGTGAAATACCCAAGAACTGGTGATTGCCTTTTGTGTATACATTCTGATACTCCTTCACTTGCTGGTAAGGACCAATATGTTCATTCTCAAAAAGGGGAACTGTCAGCAACTAGTTTAATGTCTGAAAGTACTGCACCTAATCTTGTATACAAGAGGAGGAATTTACGAGAAAATTCTGTCACCATACTATCAGCATGTGATGTGAAAAACCCGAGAACTGGTGATTGCCTTTCGTTTATACATTCTGATGCTCCTTCACTTGCTGGTAAGGATCAATATGTTCATTCTCAAAAAGGGGAACTGTCAGCGATTAGTATAATGTCTGAAAGTACTGCACCTAATCTTGTATACAAGAGGAAGAAGTTACGAGACCCGAGAACTGGTGATTGCCTTTCGTTTATACATTCTGATGCTCCTTCACTTGCTGGTAAGGCATATGTTCATTCTCAAAAAGGGGATCAGAATGGACCATGTTTATGCAATAGAGCATCTGCTGTTATAAAATCAAAGTCTTTTCATGGGTTTTCTGTTGATGAGGAATTAATTTCTAATGAAGCAACTAAAGCTAGTGTTCCAAAAGGTTTAGAGGTAGACAGTGTAAACGATAGTTGCTCGTCGTCAAAGTCAAATATGGAGAATGTTTCCACCTCCAATAAGACTGAAGTAGATGAAACCGCTGATTGCTCCTCTTCTAGTGCAATCGTTATGGAAGCTGTGGGAGATCTGTCTGAAAAGGATCTCTGCATCTCTATTCTCAGAACCCATGGGCTGCTCGGGGAAGTTCGGATAACTAGGAGCTGTGGTTCTGCTGATGACATTAATACCAGTAGCAGCAAGAGCTGTCGACGGTCATGCAAAATTTGTAATCGTTCAGAAACCACTCTGAAAATGCTGATTTGTGATAATTGTGAAGAGGCATTTCACATGTCATGCTGCCAGCCACGAATAAAGAAGGTACCTATAGATGAATGGTTCTGTCATTCCTGCTTGAGAGAGAAACATACAATTTTAAAAGAGAGAGTTACTAGAAAATTTCCGAATATCACTAGTGTCATGAGTAGGAATGCGTCATCTAAGGATGAGGTGAATCCCATACTATTGATGCTGAGAGACACTGAGCCATATAGAACTAGTGTTCGGGTTGGCAAAGGTTTTCAAGCGGAAGTTGATGACTGGTCAGGTCCAATAAACAATGATGGCATTGGTGAACCGTTGGAATTACATCCTTCGGAGTATGCTAGACTGCATGAGTTGAATTCCAGCAAACCCTCAAAAATTAACTCTATAAGTAACTGGATCCAATGCCGAGAAGTTGTTGATCCTGAAAATGGAATAAGATGTGGAAAGTGGCGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0019899 GO:0070063
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2 PHD

Protein Analysis

562

Amino Acids

62.09

Weight (kDa)

6.27

Isoelectric Point (pI)

53.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 395 - 439 1.1e-09 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 830
AarI CACCTGC 1 cut(s) 1674
Acc36I ACCTGC 1 cut(s) 1674
Acc65I GGTACC 1 cut(s) 1285
AccB1I GGYRCC 1 cut(s) 1285
AccB7I CCANNNNNTGG 1 cut(s) 347
AccI GTMKAC 6 cut(s) 276, 367, 477, 678, 921, 1174
AciI CCGC 2 cut(s) 1005, 1490
AclWI GGATC 6 cut(s) 609, 795, 1074, 1621, 1634, 1643
AcsI RAATTY 5 cut(s) 490, 502, 1188, 1361, 1585
AcuI CTGAAG 2 cut(s) 150, 1011
AfaI GTAC 4 cut(s) 121, 460, 661, 1287
AfiI CCNNNNNNNGG 4 cut(s) 347, 548, 710, 1658
AflIII ACRYGT 1 cut(s) 1254
AgsI TTSAA 5 cut(s) 30, 35, 195, 1487, 1585
AhlI ACTAGT 3 cut(s) 440, 1376, 1460
AjnI CCWGG 1 cut(s) 94
AjuI GAANNNNNNNTTGG 2 cut(s) 205, 237
AloI GAACNNNNNNTCC 2 cut(s) 1117, 1149
AluBI AGCT 8 cut(s) 38, 164, 219, 229, 896, 1043, 1128, 1170
AluI AGCT 8 cut(s) 38, 164, 219, 229, 896, 1043, 1128, 1170
Alw26I GTCTC 3 cut(s) 302, 693, 1434
AlwI GGATC 6 cut(s) 609, 795, 1074, 1621, 1634, 1643
Ama87I CYCGRG 3 cut(s) 541, 703, 1103
ApeKI GCWGC 4 cut(s) 38, 1099, 1161, 1263
ApoI RAATTY 5 cut(s) 490, 502, 1188, 1361, 1585
AseI ATTAAT 2 cut(s) 872, 1149
Asp700I GAANNNNTTC 1 cut(s) 220
Asp718I GGTACC 1 cut(s) 1285
AspLEI GCGC 1 cut(s) 1683
AspS9I GGNCC 3 cut(s) 400, 797, 1511
AsuHPI GGTGA 6 cut(s) 362, 502, 563, 725, 1426, 1547
AvaI CYCGRG 3 cut(s) 541, 703, 1103
AvaII GGWCC 3 cut(s) 400, 797, 1511
BamHI GGATCC 1 cut(s) 1626
BanI GGYRCC 1 cut(s) 1285
BbvCI CCTCAGC 1 cut(s) 186
BbvI GCAGC 4 cut(s) 25, 1086, 1173, 1250
BccI CCATC 1 cut(s) 1520
BcgI CGANNNNNNTGC 2 cut(s) 1164, 1198
BciT130I CCWGG 1 cut(s) 96
BcoDI GTCTC 3 cut(s) 302, 693, 1434
BcuI ACTAGT 3 cut(s) 440, 1376, 1460
BfaI CTAG 9 cut(s) 161, 441, 897, 1023, 1122, 1356, 1377, 1461, 1569
BfmI CTRYAG 1 cut(s) 1290
BfuAI ACCTGC 1 cut(s) 1674
BglII AGATCT 1 cut(s) 1051
BisI GCNGC 4 cut(s) 39, 1100, 1162, 1264
BlsI GCNGC 4 cut(s) 40, 1101, 1163, 1265
BmcAI AGTACT 2 cut(s) 460, 661
Bme1390I CCNGG 1 cut(s) 96
Bme18I GGWCC 3 cut(s) 400, 797, 1511
BmeT110I CYCGRG 3 cut(s) 541, 703, 1103
BmgT120I GGNCC 3 cut(s) 400, 797, 1511
BmiI GGNNCC 2 cut(s) 1287, 1628
BmrFI CCNGG 1 cut(s) 96
BmsI GCATC 7 cut(s) 81, 142, 568, 730, 827, 1083, 1422
Bpu10I CCTNAGC 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 1339
BsaI GGTCTC 2 cut(s) 302, 693
BsaJI CCNNGG 1 cut(s) 1093
BsaXI ACNNNNNCTCC 2 cut(s) 1117, 1147
Bsc4I CCNNNNNNNGG 4 cut(s) 347, 548, 710, 1658
Bse1I ACTGG 7 cut(s) 24, 352, 553, 715, 1155, 1508, 1628
BseBI CCWGG 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 1093
BseGI GGATG 3 cut(s) 96, 1414, 1552
BseLI CCNNNNNNNGG 4 cut(s) 347, 548, 710, 1658
BseMII CTCAG 5 cut(s) 177, 297, 1099, 1427, 1437
BseNI ACTGG 7 cut(s) 24, 352, 553, 715, 1155, 1508, 1628
BseRI GAGGAG 3 cut(s) 298, 499, 1006
BseXI GCAGC 4 cut(s) 25, 1086, 1173, 1250
BseYI CCCAGC 1 cut(s) 225
BsgI GTGCAG 3 cut(s) 246, 447, 648
BshNI GGYRCC 1 cut(s) 1285
BsiHKCI CYCGRG 3 cut(s) 541, 703, 1103
BslI CCNNNNNNNGG 4 cut(s) 347, 548, 710, 1658
BsmAI GTCTC 3 cut(s) 302, 693, 1434
BsmI GAATGC 2 cut(s) 187, 1399
Bso31I GGTCTC 2 cut(s) 302, 693
BsoBI CYCGRG 3 cut(s) 541, 703, 1103
Bsp1407I TGTACA 1 cut(s) 119
Bsp143I GATC 8 cut(s) 133, 268, 601, 787, 1051, 1066, 1626, 1648
Bsp19I CCATGG 1 cut(s) 1093
BspACI CCGC 2 cut(s) 1005, 1490
BspCNI CTCAG 5 cut(s) 178, 298, 1098, 1428, 1438
BspHI TCATGA 1 cut(s) 1383
BspLI GGNNCC 2 cut(s) 1287, 1628
BspMI ACCTGC 1 cut(s) 1674
BspPI GGATC 6 cut(s) 609, 795, 1074, 1621, 1634, 1643
BspQI GCTCTTC 1 cut(s) 226
BspT107I GGYRCC 1 cut(s) 1285
BspTNI GGTCTC 2 cut(s) 302, 693
BsrGI TGTACA 1 cut(s) 119
BsrI ACTGG 7 cut(s) 24, 352, 553, 715, 1155, 1508, 1628
BssECI CCNNGG 1 cut(s) 1093
BssMI GATC 8 cut(s) 133, 268, 601, 787, 1051, 1066, 1626, 1648
BssNAI GTATAC 4 cut(s) 277, 368, 478, 679
BssT1I CCWWGG 1 cut(s) 1093
Bst1107I GTATAC 4 cut(s) 277, 368, 478, 679
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 5 cut(s) 432, 633, 926, 1179, 1542
Bst6I CTCTTC 3 cut(s) 226, 1024, 1236
BstAUI TGTACA 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 1268
BstDEI CTNAG 7 cut(s) 186, 202, 306, 1085, 1404, 1436, 1446
BstDSI CCRYGG 1 cut(s) 1093
BstF5I GGATG 3 cut(s) 96, 1414, 1552
BstHHI GCGC 1 cut(s) 1683
BstKTI GATC 8 cut(s) 136, 271, 604, 790, 1054, 1069, 1629, 1651
BstMAI GTCTC 3 cut(s) 302, 693, 1434
BstMBI GATC 8 cut(s) 133, 268, 601, 787, 1051, 1066, 1626, 1648
BstMWI GCNNNNNNNGC 4 cut(s) 161, 761, 893, 1167
BstNI CCWGG 1 cut(s) 96
BstNSI RCATGY 3 cut(s) 327, 528, 1258
BstSCI CCNGG 1 cut(s) 94
BstSFI CTRYAG 1 cut(s) 1290
BstV1I GCAGC 4 cut(s) 25, 1086, 1173, 1250
BstX2I RGATCY 3 cut(s) 1051, 1066, 1626
BstYI RGATCY 3 cut(s) 1051, 1066, 1626
BstZ17I GTATAC 4 cut(s) 277, 368, 478, 679
BtgI CCRYGG 1 cut(s) 1093
BtgZI GCGATG 1 cut(s) 144
BtsCI GGATG 3 cut(s) 96, 1414, 1552
BtsIMutI CAGTG 2 cut(s) 931, 1443
BveI ACCTGC 1 cut(s) 1674
Cac8I GCNNGC 1 cut(s) 1268
CciI TCATGA 1 cut(s) 1383
CfoI GCGC 1 cut(s) 1683
Cfr13I GGNCC 3 cut(s) 400, 797, 1511
CseI GACGC 1 cut(s) 1386
Csp6I GTAC 4 cut(s) 120, 459, 660, 1286
CviQI GTAC 4 cut(s) 120, 459, 660, 1286
DdeI CTNAG 7 cut(s) 186, 202, 306, 1085, 1404, 1436, 1446
DpnI GATC 8 cut(s) 135, 270, 603, 789, 1053, 1068, 1628, 1650
DpnII GATC 8 cut(s) 133, 268, 601, 787, 1051, 1066, 1626, 1648
DraI TTTAAA 1 cut(s) 1341
Eam1104I CTCTTC 3 cut(s) 226, 1024, 1236
EarI CTCTTC 3 cut(s) 226, 1024, 1236
Eco130I CCWWGG 1 cut(s) 1093
Eco31I GGTCTC 2 cut(s) 302, 693
Eco47I GGWCC 3 cut(s) 400, 797, 1511
Eco57I CTGAAG 2 cut(s) 150, 1011
Eco88I CYCGRG 3 cut(s) 541, 703, 1103
EcoRI GAATTC 1 cut(s) 1585
EcoRII CCWGG 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 1093
ErhI CCWWGG 1 cut(s) 1093
FalI AAGNNNNNCTT 2 cut(s) 205, 237
FauNDI CATATG 1 cut(s) 766
FblI GTMKAC 6 cut(s) 276, 367, 477, 678, 921, 1174
Fnu4HI GCNGC 4 cut(s) 39, 1100, 1162, 1264
FokI GGATG 3 cut(s) 103, 1421, 1539
Fsp4HI GCNGC 4 cut(s) 39, 1100, 1162, 1264
FspBI CTAG 9 cut(s) 161, 441, 897, 1023, 1122, 1356, 1377, 1461, 1569
GlaI GCGC 1 cut(s) 1682
GluI GCNGC 4 cut(s) 39, 1100, 1162, 1264
GsaI CCCAGC 1 cut(s) 229
HgaI GACGC 1 cut(s) 1386
HhaI GCGC 1 cut(s) 1683
Hin6I GCGC 1 cut(s) 1681
HinP1I GCGC 1 cut(s) 1681
HincII GTYRAC 1 cut(s) 1175
HindII GTYRAC 1 cut(s) 1175
HinfI GANTC 2 cut(s) 191, 1417
HphI GGTGA 6 cut(s) 362, 502, 563, 725, 1426, 1547
Hpy166II GTNNAC 9 cut(s) 120, 277, 368, 478, 679, 922, 931, 1175, 1538
Hpy188III TCNNGA 2 cut(s) 1384, 1652
Hpy8I GTNNAC 9 cut(s) 120, 277, 368, 478, 679, 922, 931, 1175, 1538
Hpy99I CGWCG 2 cut(s) 949, 1179
HpyAV CCTTC 5 cut(s) 393, 594, 756, 1276, 1566
HpyCH4III ACNGT 5 cut(s) 432, 633, 926, 1179, 1542
HpyF10VI GCNNNNNNNGC 4 cut(s) 161, 761, 893, 1167
HpyF3I CTNAG 7 cut(s) 186, 202, 306, 1085, 1404, 1436, 1446
HspAI GCGC 1 cut(s) 1681
KpnI GGTACC 1 cut(s) 1289
Kzo9I GATC 8 cut(s) 133, 268, 601, 787, 1051, 1066, 1626, 1648
LguI GCTCTTC 1 cut(s) 226
LmnI GCTCC 4 cut(s) 586, 748, 1019, 1125
Lsp1109I GCAGC 4 cut(s) 25, 1086, 1173, 1250
LweI GCATC 7 cut(s) 81, 142, 568, 730, 827, 1083, 1422
MaeI CTAG 9 cut(s) 161, 441, 897, 1023, 1122, 1356, 1377, 1461, 1569
MaeIII GTNAC 6 cut(s) 66, 291, 508, 693, 1351, 1619
MalI GATC 8 cut(s) 135, 270, 603, 789, 1053, 1068, 1628, 1650
MboI GATC 8 cut(s) 133, 268, 601, 787, 1051, 1066, 1626, 1648
MboII GAAGA 4 cut(s) 213, 700, 1011, 1253
MfeI CAATTG 1 cut(s) 30
MflI RGATCY 3 cut(s) 1051, 1066, 1626
MmeI TCCRAC 1 cut(s) 1524
MroXI GAANNNNTTC 1 cut(s) 220
MseI TTAA 6 cut(s) 245, 446, 872, 1149, 1340, 1608
MslI CAYNNNNRTG 3 cut(s) 576, 738, 805
MspA1I CMGCKG 2 cut(s) 229, 1007
MspR9I CCNGG 1 cut(s) 96
MunI CAATTG 1 cut(s) 30
Mva1269I GAATGC 2 cut(s) 187, 1399
MvaI CCWGG 1 cut(s) 96
MwoI GCNNNNNNNGC 4 cut(s) 161, 761, 893, 1167
NcoI CCATGG 1 cut(s) 1093
NdeI CATATG 1 cut(s) 766
NdeII GATC 8 cut(s) 133, 268, 601, 787, 1051, 1066, 1626, 1648
NlaIV GGNNCC 2 cut(s) 1287, 1628
NmeAIII GCCGAG 1 cut(s) 1661
NmuCI GTSAC 1 cut(s) 508
NspI RCATGY 3 cut(s) 327, 528, 1258
PagI TCATGA 1 cut(s) 1383
PaqCI CACCTGC 1 cut(s) 1674
PciI ACATGT 1 cut(s) 1254
PciSI GCTCTTC 1 cut(s) 226
PctI GAATGC 2 cut(s) 187, 1399
PdmI GAANNNNTTC 1 cut(s) 220
PfeI GAWTC 2 cut(s) 191, 1417
PflMI CCANNNNNTGG 1 cut(s) 347
PkrI GCNGC 4 cut(s) 40, 1101, 1163, 1265
PscI ACATGT 1 cut(s) 1254
PshBI ATTAAT 2 cut(s) 872, 1149
PsiI TTATAA 1 cut(s) 830
Psp6I CCWGG 1 cut(s) 94
PspFI CCCAGC 1 cut(s) 225
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 2 cut(s) 1287, 1628
PspPI GGNCC 3 cut(s) 400, 797, 1511
PsuI RGATCY 3 cut(s) 1051, 1066, 1626
PvuII CAGCTG 1 cut(s) 229
RsaI GTAC 4 cut(s) 121, 460, 661, 1287
RsaNI GTAC 4 cut(s) 120, 459, 660, 1286
RseI CAYNNNNRTG 3 cut(s) 576, 738, 805
SalI GTCGAC 1 cut(s) 1173
SapI GCTCTTC 1 cut(s) 226
SaqAI TTAA 6 cut(s) 245, 446, 872, 1149, 1340, 1608
SatI GCNGC 4 cut(s) 39, 1100, 1162, 1264
Sau3AI GATC 8 cut(s) 133, 268, 601, 787, 1051, 1066, 1626, 1648
Sau96I GGNCC 3 cut(s) 400, 797, 1511
ScaI AGTACT 2 cut(s) 460, 661
ScrFI CCNGG 1 cut(s) 96
SfaNI GCATC 7 cut(s) 81, 142, 568, 730, 827, 1083, 1422
SfcI CTRYAG 1 cut(s) 1290
SinI GGWCC 3 cut(s) 400, 797, 1511
SmiMI CAYNNNNRTG 3 cut(s) 576, 738, 805
SmlI CTYRAG 1 cut(s) 1318
SmoI CTYRAG 1 cut(s) 1318
SpeI ACTAGT 3 cut(s) 440, 1376, 1460
SsiI CCGC 2 cut(s) 1005, 1490
SspMI CTAG 9 cut(s) 161, 441, 897, 1023, 1122, 1356, 1377, 1461, 1569
StyD4I CCNGG 1 cut(s) 94
StyI CCWWGG 1 cut(s) 1093
TaaI ACNGT 5 cut(s) 432, 633, 926, 1179, 1542
TaqI TCGA 1 cut(s) 1174
TatI WGTACW 3 cut(s) 119, 458, 659
TfiI GAWTC 2 cut(s) 191, 1417
Tru1I TTAA 6 cut(s) 245, 446, 872, 1149, 1340, 1608
Tru9I TTAA 6 cut(s) 245, 446, 872, 1149, 1340, 1608
TscAI CASTG 2 cut(s) 931, 1450
TseFI GTSAC 1 cut(s) 508
TseI GCWGC 4 cut(s) 38, 1099, 1161, 1263
Tsp45I GTSAC 1 cut(s) 508
TspDTI ATGAA 7 cut(s) 401, 602, 761, 836, 897, 1014, 1311
TspRI CASTG 2 cut(s) 931, 1450
Van91I CCANNNNNTGG 1 cut(s) 347
VpaK11BI GGWCC 3 cut(s) 400, 797, 1511
VspI ATTAAT 2 cut(s) 872, 1149
XapI RAATTY 5 cut(s) 490, 502, 1188, 1361, 1585
XceI RCATGY 3 cut(s) 327, 528, 1258
XmiI GTMKAC 6 cut(s) 276, 367, 477, 678, 921, 1174
XmnI GAANNNNTTC 1 cut(s) 220
XspI CTAG 9 cut(s) 161, 441, 897, 1023, 1122, 1356, 1377, 1461, 1569
ZrmI AGTACT 2 cut(s) 460, 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.