MD13G1259500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0005201
Physical Location & Seq
Forward (+)
31361674 .. 31364051
2378 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1259500.v1.1.491

Sequence Viewer

Length: 162 bp
ATGTATGAAATGGTTCAGGAATCACAAAGGTGTGGTGACTACGAGGAATTCGACGGTGTTCTGACAGATTGGACAAAATTAGGACTCACCTTCGGGTGTATCAATTTAAATTGTATCTTAAAGCTTCCGTACTGTGCAAATGGTTACGTCACTCTCACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

6.06

Weight (kDa)

4.2

Isoelectric Point (pI)

26.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 47
AcvI CACGTG 1 cut(s) 159
AfaI GTAC 1 cut(s) 131
AleI CACNNNNGTG 1 cut(s) 28
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
ApoI RAATTY 1 cut(s) 47
Asp700I GAANNNNTTC 1 cut(s) 12
AsuHPI GGTGA 2 cut(s) 47, 79
BbrPI CACGTG 1 cut(s) 159
BsaAI YACGTR 1 cut(s) 159
Bst4CI ACNGT 2 cut(s) 56, 134
BstBAI YACGTR 1 cut(s) 159
Csp6I GTAC 1 cut(s) 130
CviJI RGCY 1 cut(s) 124
CviKI_1 RGCY 1 cut(s) 124
CviQI GTAC 1 cut(s) 130
DraI TTTAAA 1 cut(s) 108
Eco72I CACGTG 1 cut(s) 159
EcoRI GAATTC 1 cut(s) 47
FaiI YATR 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 2 cut(s) 20, 84
HphI GGTGA 2 cut(s) 47, 79
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 1 cut(s) 17
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 100
HpyCH4III ACNGT 2 cut(s) 56, 134
HpyCH4IV ACGT 2 cut(s) 147, 158
HpyCH4V TGCA 1 cut(s) 137
HpySE526I ACGT 2 cut(s) 147, 158
LpnPI CCDG 1 cut(s) 2
MaeII ACGT 2 cut(s) 147, 158
MaeIII GTNAC 3 cut(s) 35, 143, 148
MluCI AATT 4 cut(s) 47, 77, 103, 109
MlyI GAGTC 1 cut(s) 78
MnlI CCTC 1 cut(s) 37
MroXI GAANNNNTTC 1 cut(s) 12
MseI TTAA 2 cut(s) 107, 119
MslI CAYNNNNRTG 1 cut(s) 28
NmuCI GTSAC 2 cut(s) 35, 148
OliI CACNNNNGTG 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 20
PleI GAGTC 1 cut(s) 78
PmaCI CACGTG 1 cut(s) 159
PmlI CACGTG 1 cut(s) 159
PpsI GAGTC 1 cut(s) 78
Ppu21I YACGTR 1 cut(s) 159
PspCI CACGTG 1 cut(s) 159
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
RseI CAYNNNNRTG 1 cut(s) 28
SaqAI TTAA 2 cut(s) 107, 119
SchI GAGTC 1 cut(s) 78
SetI ASST 5 cut(s) 32, 92, 126, 150, 161
SgeI CNNG 3 cut(s) 29, 55, 106
SmiI ATTTAAAT 1 cut(s) 108
SmiMI CAYNNNNRTG 1 cut(s) 28
Sse9I AATT 4 cut(s) 47, 77, 103, 109
SwaI ATTTAAAT 1 cut(s) 108
TaaI ACNGT 2 cut(s) 56, 134
TaiI ACGT 2 cut(s) 150, 161
TaqI TCGA 1 cut(s) 51
TasI AATT 4 cut(s) 47, 77, 103, 109
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 2 cut(s) 107, 119
Tru9I TTAA 2 cut(s) 107, 119
TseFI GTSAC 2 cut(s) 35, 148
Tsp45I GTSAC 2 cut(s) 35, 148
TspDTI ATGAA 1 cut(s) 21
TspGWI ACGGA 1 cut(s) 117
XapI RAATTY 1 cut(s) 47
XmnI GAANNNNTTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.