pycom11g04270

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
3315057 .. 3315323
267 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g04270.1

Sequence Viewer

Length: 267 bp
ATGACTGGCATATCTATACATACGTATATATGTTTATTTTCTGAGAAAGTATACAGGTTTTACGGAGAGGGGTTACAAAGTTTTGAGAAGTGTTTGGAATTGGAAAAGAATTGTTTTACTGACCCACTCAATTTTGGTTTTGCGCCCCTCCAGGTTCAAGAATTGCAAAGGTGTTGTGACTACGAGGAAATTCAACGGTGTTCTGACAGAATGGACCAAATAAGGACTCACCTTCGGGTGTTTCATTTTAGAAGTTGTATATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.57

Weight (kDa)

5.86

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 51
AcsI RAATTY 1 cut(s) 189
AgsI TTSAA 2 cut(s) 158, 194
AjnI CCWGG 1 cut(s) 150
ApoI RAATTY 1 cut(s) 189
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 221
AvaII GGWCC 1 cut(s) 214
BciT130I CCWGG 1 cut(s) 152
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 214
BmrFI CCNGG 1 cut(s) 152
BpmI CTGGAG 1 cut(s) 134
BsaAI YACGTR 1 cut(s) 24
Bse1I ACTGG 1 cut(s) 10
BseBI CCWGG 1 cut(s) 152
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 10
BspCNI CTCAG 1 cut(s) 34
BsrI ACTGG 1 cut(s) 10
BssNAI GTATAC 1 cut(s) 52
Bst1107I GTATAC 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 198
BstBAI YACGTR 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 42
BstHHI GCGC 1 cut(s) 145
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstSNI TACGTA 1 cut(s) 24
BstZ17I GTATAC 1 cut(s) 52
CfoI GCGC 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 214
DdeI CTNAG 1 cut(s) 42
Eco105I TACGTA 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 150
FaiI YATR 8 cut(s) 11, 17, 21, 27, 29, 31, 52, 260
FblI GTMKAC 1 cut(s) 51
GlaI GCGC 1 cut(s) 144
GsuI CTGGAG 1 cut(s) 134
HhaI GCGC 1 cut(s) 145
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HinfI GANTC 1 cut(s) 226
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 2 cut(s) 43, 205
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 242
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 1 cut(s) 166
HpyF3I CTNAG 1 cut(s) 42
HpySE526I ACGT 1 cut(s) 23
HspAI GCGC 1 cut(s) 143
LpnPI CCDG 3 cut(s) 40, 137, 164
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 2 cut(s) 72, 176
MluCI AATT 5 cut(s) 98, 109, 130, 161, 189
MlyI GAGTC 1 cut(s) 220
MnlI CCTC 3 cut(s) 61, 158, 178
MseI TTAA 1 cut(s) 265
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
NmuCI GTSAC 1 cut(s) 176
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
Ppu21I YACGTR 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspPI GGNCC 1 cut(s) 214
SaqAI TTAA 1 cut(s) 265
Sau96I GGNCC 1 cut(s) 214
SchI GAGTC 1 cut(s) 220
ScrFI CCNGG 1 cut(s) 152
SetI ASST 5 cut(s) 26, 59, 156, 173, 234
SgeI CNNG 7 cut(s) 18, 67, 163, 164, 170, 196, 248
SinI GGWCC 1 cut(s) 214
SnaBI TACGTA 1 cut(s) 24
Sse9I AATT 5 cut(s) 98, 109, 130, 161, 189
StyD4I CCNGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 198
TaiI ACGT 1 cut(s) 26
TasI AATT 5 cut(s) 98, 109, 130, 161, 189
Tru1I TTAA 1 cut(s) 265
Tru9I TTAA 1 cut(s) 265
TseFI GTSAC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 233
TspGWI ACGGA 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 1 cut(s) 189
XmiI GTMKAC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.