MD15G1096800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0010531
Physical Location & Seq
Forward (+)
6754439 .. 6760752
6314 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1096800.v1.1.491

Sequence Viewer

Length: 714 bp
ATGGTGATCAGTGCAAGGTGTTGCTTGAGCAACTCCATGAGAGTTTTGAATTTATTTGTCAATGTTTGTGGAGTTGCAGTCATCATCTACTGCCTTTGGCTCACCAAGAAATGGCAAGTTGGAGTCTCTGAGCTCCCTCCTGTCCCAATTATCCCTCAGCCCTGGTTTATATATACATGTTTAGGTATGGGAATTGCTGTCTGCCTCAGCACCCTTTGCGGTCATATTGTTGCCCATTCCGTCAGCAGTTTTATTCTCTTCATTTACATAATCTTCGTCTTCTGTCTTCTTTGCCTTGAAGTTGGAGTGATTGTCTCAATTTTCTTTAGGATGGACTGGGAAGTGCAATTCGCCAAGTACATTGATGAGGATCACACCCCGTTCAAAAAGTTCTTGAGGTTTCATCTAAACATGTGCCGCATCATTGTAATTCTCATTTTGATACCGCAGATCAAGGCTACCGTGCTGGGAATCATTCTTTGGGCCATTGGTTCTGAGCCGAGGACGGAACATTTCAACTCTTCTGATGTCACAAACTTCAGATACTCATTTCTAGCAGCACCTACACAATCGTTACAAGATATATCAAGACATGGATTCAGAAACTACGAAGTTTCATCACCAGAATTTGAATCTCCACCACGCCCAAGCCTTTTTTCAAATGTACAAAGATTTTTCAGAATGCGTTTTCATAGAAGAGTCACCCTTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

238

Amino Acids

27.32

Weight (kDa)

8.99

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tetraspanin PF00335 12 - 115 6.6e-06 Tetraspanin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 111
AciI CCGC 3 cut(s) 219, 418, 446
AclWI GGATC 1 cut(s) 378
AcsI RAATTY 2 cut(s) 49, 626
AcuI CTGAAG 1 cut(s) 523
AfaI GTAC 2 cut(s) 359, 666
AfiI CCNNNNNNNGG 1 cut(s) 111
AflIII ACRYGT 2 cut(s) 176, 411
AgsI TTSAA 6 cut(s) 49, 299, 385, 517, 632, 660
AjnI CCWGG 1 cut(s) 161
AjuI GAANNNNNNNTTGG 4 cut(s) 463, 495, 640, 672
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 2 cut(s) 130, 319
AlwI GGATC 1 cut(s) 378
AoxI GGCC 1 cut(s) 483
ApeKI GCWGC 1 cut(s) 557
ApoI RAATTY 2 cut(s) 49, 626
AspS9I GGNCC 1 cut(s) 483
AsuHPI GGTGA 4 cut(s) 16, 94, 612, 694
BanII GRGCYC 1 cut(s) 135
BbsI GAAGAC 2 cut(s) 271, 278
Bbv12I GWGCWC 1 cut(s) 135
BbvCI CCTCAGC 2 cut(s) 156, 206
BbvI GCAGC 1 cut(s) 569
BccI CCATC 1 cut(s) 325
BciT130I CCWGG 1 cut(s) 163
BclI TGATCA 1 cut(s) 6
BcoDI GTCTC 2 cut(s) 130, 319
BfaI CTAG 1 cut(s) 554
BisI GCNGC 2 cut(s) 418, 558
BlsI GCNGC 2 cut(s) 419, 559
Bme1390I CCNGG 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 483
BmrFI CCNGG 1 cut(s) 163
BmrI ACTGGG 1 cut(s) 346
BmsI GCATC 1 cut(s) 429
BmuI ACTGGG 1 cut(s) 346
BpiI GAAGAC 2 cut(s) 271, 278
Bpu10I CCTNAGC 2 cut(s) 156, 206
BpuEI CTTGAG 2 cut(s) 46, 415
BsaBI GATNNNNATC 1 cut(s) 369
BsaJI CCNNGG 2 cut(s) 161, 500
BsaXI ACNNNNNCTCC 4 cut(s) 63, 93, 297, 327
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse1I ACTGG 1 cut(s) 341
Bse8I GATNNNNATC 1 cut(s) 369
BseBI CCWGG 1 cut(s) 163
BseDI CCNNGG 2 cut(s) 161, 500
BseGI GGATG 1 cut(s) 336
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMII CTCAG 4 cut(s) 120, 170, 220, 486
BseNI ACTGG 1 cut(s) 341
BseXI GCAGC 1 cut(s) 569
BseYI CCCAGC 1 cut(s) 466
BshFI GGCC 1 cut(s) 485
BsiHKAI GWGCWC 1 cut(s) 135
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 111
BsmAI GTCTC 2 cut(s) 130, 319
BsmFI GGGAC 1 cut(s) 128
BsmI GAATGC 1 cut(s) 687
BsnI GGCC 1 cut(s) 485
Bsp1286I GDGCHC 1 cut(s) 135
Bsp1407I TGTACA 1 cut(s) 664
Bsp143I GATC 3 cut(s) 6, 370, 450
BspACI CCGC 3 cut(s) 219, 418, 446
BspANI GGCC 1 cut(s) 485
BspCNI CTCAG 4 cut(s) 121, 169, 219, 487
BspPI GGATC 1 cut(s) 378
BsrGI TGTACA 1 cut(s) 664
BsrI ACTGG 1 cut(s) 341
BssECI CCNNGG 2 cut(s) 161, 500
BssMI GATC 3 cut(s) 6, 370, 450
Bst2UI CCWGG 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 463
Bst6I CTCTTC 3 cut(s) 263, 526, 691
BstAPI GCANNNNNTGC 1 cut(s) 216
BstAUI TGTACA 1 cut(s) 664
BstDEI CTNAG 5 cut(s) 129, 156, 206, 495, 707
BstF5I GGATG 1 cut(s) 336
BstKTI GATC 3 cut(s) 9, 373, 453
BstMAI GTCTC 2 cut(s) 130, 319
BstMBI GATC 3 cut(s) 6, 370, 450
BstMWI GCNNNNNNNGC 1 cut(s) 216
BstNI CCWGG 1 cut(s) 163
BstNSI RCATGY 2 cut(s) 180, 415
BstSCI CCNGG 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 569
BstV2I GAAGAC 2 cut(s) 271, 278
BsuRI GGCC 1 cut(s) 485
BtsCI GGATG 1 cut(s) 336
BtsIMutI CAGTG 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 483
Csp6I GTAC 2 cut(s) 358, 665
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviAII CATG 4 cut(s) 37, 177, 412, 593
CviJI RGCY 7 cut(s) 100, 133, 160, 458, 485, 499, 651
CviKI_1 RGCY 7 cut(s) 100, 133, 160, 458, 485, 499, 651
CviQI GTAC 2 cut(s) 358, 665
DdeI CTNAG 5 cut(s) 129, 156, 206, 495, 707
DpnI GATC 3 cut(s) 8, 372, 452
DpnII GATC 3 cut(s) 6, 370, 450
Eam1104I CTCTTC 3 cut(s) 263, 526, 691
EarI CTCTTC 3 cut(s) 263, 526, 691
Ecl136II GAGCTC 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 135
Eco53kI GAGCTC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 523
EcoICRI GAGCTC 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 161
EcoT38I GRGCYC 1 cut(s) 135
FaeI CATG 4 cut(s) 40, 180, 415, 596
FaqI GGGAC 1 cut(s) 128
FatI CATG 4 cut(s) 36, 176, 411, 592
FbaI TGATCA 1 cut(s) 6
Fnu4HI GCNGC 2 cut(s) 418, 558
FokI GGATG 1 cut(s) 343
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 2 cut(s) 418, 558
FspBI CTAG 1 cut(s) 554
GluI GCNGC 2 cut(s) 418, 558
GsaI CCCAGC 1 cut(s) 470
HaeIII GGCC 1 cut(s) 485
Hin1II CATG 4 cut(s) 40, 180, 415, 596
HinfI GANTC 5 cut(s) 123, 471, 597, 632, 699
HphI GGTGA 4 cut(s) 16, 94, 612, 694
Hpy188I TCNGA 6 cut(s) 130, 496, 526, 542, 602, 680
Hpy188III TCNNGA 2 cut(s) 394, 588
HpyCH4III ACNGT 1 cut(s) 463
HpyCH4V TGCA 3 cut(s) 14, 77, 346
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
HpyF3I CTNAG 5 cut(s) 129, 156, 206, 495, 707
Hsp92II CATG 4 cut(s) 40, 180, 415, 596
Ksp22I TGATCA 1 cut(s) 6
Kzo9I GATC 3 cut(s) 6, 370, 450
LmnI GCTCC 1 cut(s) 138
LpnPI CCDG 6 cut(s) 148, 153, 175, 322, 452, 636
Lsp1109I GCAGC 1 cut(s) 569
LweI GCATC 1 cut(s) 429
MaeI CTAG 1 cut(s) 554
MaeIII GTNAC 3 cut(s) 529, 573, 700
MalI GATC 3 cut(s) 8, 372, 452
MboI GATC 3 cut(s) 6, 370, 450
MboII GAAGA 6 cut(s) 250, 265, 271, 278, 513, 708
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 7 cut(s) 49, 147, 192, 318, 347, 429, 626
MlyI GAGTC 2 cut(s) 132, 708
MmeI TCCRAC 2 cut(s) 100, 283
MnlI CCTC 6 cut(s) 147, 165, 215, 361, 390, 495
MspR9I CCNGG 1 cut(s) 163
Mva1269I GAATGC 1 cut(s) 687
MvaI CCWGG 1 cut(s) 163
MwoI GCNNNNNNNGC 1 cut(s) 216
NdeII GATC 3 cut(s) 6, 370, 450
NlaIII CATG 4 cut(s) 40, 180, 415, 596
NmeAIII GCCGAG 1 cut(s) 525
NmuCI GTSAC 2 cut(s) 529, 700
NspI RCATGY 2 cut(s) 180, 415
PciI ACATGT 2 cut(s) 176, 411
PctI GAATGC 1 cut(s) 687
PfeI GAWTC 3 cut(s) 471, 597, 632
PflMI CCANNNNNTGG 1 cut(s) 111
PkrI GCNGC 2 cut(s) 419, 559
PleI GAGTC 2 cut(s) 131, 707
PpsI GAGTC 2 cut(s) 131, 707
PscI ACATGT 2 cut(s) 176, 411
Psp124BI GAGCTC 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 161
PspFI CCCAGC 1 cut(s) 466
PspGI CCWGG 1 cut(s) 161
PspPI GGNCC 1 cut(s) 483
RsaI GTAC 2 cut(s) 359, 666
RsaNI GTAC 2 cut(s) 358, 665
SacI GAGCTC 1 cut(s) 135
SatI GCNGC 2 cut(s) 418, 558
Sau3AI GATC 3 cut(s) 6, 370, 450
Sau96I GGNCC 1 cut(s) 483
SchI GAGTC 2 cut(s) 132, 708
ScrFI CCNGG 1 cut(s) 163
SduI GDGCHC 1 cut(s) 135
SetI ASST 5 cut(s) 20, 135, 187, 401, 565
SfaNI GCATC 1 cut(s) 429
SmlI CTYRAG 2 cut(s) 25, 394
SmoI CTYRAG 2 cut(s) 25, 394
Sse9I AATT 7 cut(s) 49, 147, 192, 318, 347, 429, 626
SsiI CCGC 3 cut(s) 219, 418, 446
SspMI CTAG 1 cut(s) 554
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 463
TasI AATT 7 cut(s) 49, 147, 192, 318, 347, 429, 626
TatI WGTACW 2 cut(s) 357, 664
TauI GCSGC 1 cut(s) 420
TfiI GAWTC 3 cut(s) 471, 597, 632
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 2 cut(s) 529, 700
TseI GCWGC 1 cut(s) 557
Tsp45I GTSAC 2 cut(s) 529, 700
TspDTI ATGAA 4 cut(s) 250, 392, 606, 680
TspGWI ACGGA 2 cut(s) 229, 521
TspRI CASTG 1 cut(s) 16
Van91I CCANNNNNTGG 1 cut(s) 111
XapI RAATTY 2 cut(s) 49, 626
XceI RCATGY 2 cut(s) 180, 415
XspI CTAG 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.