Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010531

Physical Location & Seq

Genomic Coordinates Forward (+)

4803589 .. 4804741

Gene Structure 1153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010852

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAGAGCTTTGAATTTCTTAGTCAATATCTTCGGTGTCGGAGTGATCATCTACACTCTATGGCTGCTCAAGAAGTGGCAGGATGGAGTTACTGAGCTGCCTCCTGTGCCAATTGTTCCTAAACCATGGTTTATATATGCATGTTTAGGTGTGGGAATGGCTGTCTGTTTCAGCACACTATGCAGTTATCTTGTTGCTCATTGCATCACCGATTCTACTCTTCTTCTCATATACATAGTCTTTGTCTTCACTCTTCTTTGCCTTGAAGTTGCAGTGGTTGTTGCAATTTTCTTCAAGATGAACTGGGCAGCGAAACTTACAGGGTACATAGATGACACCGAGTTCAAGAAGTTCATGTTATTTCATCTTTACTTGTGTCGTGTCATTGCGATTCTAATTTTGGTACCGCAGATCAAATGTGCAGTTTTAGCAATCATTCTTTGGGCTATTGGTACTGAGCCACTGAGTCACTGCAACTATTCTGATCATGTAACTGACTTTAGATATTCATTTCTGGCGATACCAAGCCCAACATCGTTCCTCAATATGTCGAGTCGTGGCTCCAGAAATTATGAAGCCTTGCCAAGATCAGATCAATGTGAATATCCGCCACGGCAGAGCTTTTTCTCACATATTAACAGATTTTTCAGAATGCAGTTTCATAGAAGAGTCACACTTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

228

Amino Acids

26.12

Weight (kDa)

8.86

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010531)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g36010
malus_domestica	MD06G1168200.v1.1 MD08G1117200.v1.1 MD15G1096800.v1.1
prunus_persica	Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1
pyrus_communis	pycom08g09780
rosa_chinensis	RchiOBHm_Chr6g0305861
rosa_laevigata	RLG00000010852
rosa_multiflora	Rmu_sc0001809.1_g000043
rosa_roxburghii	Rroxscaffold_7G00162270
rosa_rugosa	Rorug06G0344400
rosa_samantha	Rh6AG456200 Rh6BG445000 Rh6CG470200 Rh6DG456900
rosa_wichuraiana	Rw6G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	403
AccB1I	GGYRCC	1 cut(s)	403
AciI	CCGC	2 cut(s)	407, 608
AcsI	RAATTY	1 cut(s)	13
AfaI	GTAC	3 cut(s)	326, 405, 454
AgsI	TTSAA	4 cut(s)	13, 266, 295, 346
AluBI	AGCT	3 cut(s)	8, 97, 621
AluI	AGCT	3 cut(s)	8, 97, 621
ApeKI	GCWGC	3 cut(s)	64, 97, 308
ApoI	RAATTY	1 cut(s)	13
Asp718I	GGTACC	1 cut(s)	403
AsuHPI	GGTGA	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	403
BbsI	GAAGAC	1 cut(s)	238
BbvI	GCAGC	3 cut(s)	51, 84, 320
BccI	CCATC	1 cut(s)	77
BceAI	ACGGC	1 cut(s)	629
BclI	TGATCA	2 cut(s)	45, 484
BisI	GCNGC	3 cut(s)	65, 98, 309
BlsI	GCNGC	3 cut(s)	66, 99, 310
BmiI	GGNNCC	2 cut(s)	405, 562
BmrI	ACTGGG	1 cut(s)	313
BmsI	GCATC	1 cut(s)	213
BmuI	ACTGGG	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	238
BpmI	CTGGAG	1 cut(s)	547
BpuEI	CTTGAG	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	125, 611
Bse1I	ACTGG	1 cut(s)	308
Bse3DI	GCAATG	2 cut(s)	199, 384
BseDI	CCNNGG	2 cut(s)	125, 611
BseGI	GGATG	1 cut(s)	88
BseMI	GCAATG	2 cut(s)	199, 384
BseMII	CTCAG	3 cut(s)	84, 447, 455
BseNI	ACTGG	1 cut(s)	308
BseXI	GCAGC	3 cut(s)	51, 84, 320
BsgI	GTGCAG	1 cut(s)	441
BshNI	GGYRCC	1 cut(s)	403
BsmI	GAATGC	1 cut(s)	657
Bsp143I	GATC	5 cut(s)	45, 411, 484, 587, 592
Bsp19I	CCATGG	1 cut(s)	125
BspACI	CCGC	2 cut(s)	407, 608
BspCNI	CTCAG	3 cut(s)	85, 448, 456
BspLI	GGNNCC	2 cut(s)	405, 562
BspT107I	GGYRCC	1 cut(s)	403
BsrDI	GCAATG	2 cut(s)	199, 384
BsrI	ACTGG	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	125, 611
BssMI	GATC	5 cut(s)	45, 411, 484, 587, 592
BssT1I	CCWWGG	1 cut(s)	125
Bst6I	CTCTTC	3 cut(s)	225, 258, 661
BstAPI	GCANNNNNTGC	1 cut(s)	180
BstDEI	CTNAG	5 cut(s)	19, 93, 456, 464, 677
BstDSI	CCRYGG	2 cut(s)	125, 611
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	5 cut(s)	48, 414, 487, 590, 595
BstMBI	GATC	5 cut(s)	45, 411, 484, 587, 592
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 180, 428
BstNSI	RCATGY	1 cut(s)	144
BstV1I	GCAGC	3 cut(s)	51, 84, 320
BstV2I	GAAGAC	1 cut(s)	238
BtgI	CCRYGG	2 cut(s)	125, 611
BtsCI	GGATG	1 cut(s)	88
BtsI	GCAGTG	2 cut(s)	279, 469
BtsIMutI	CAGTG	3 cut(s)	279, 461, 469
Csp6I	GTAC	3 cut(s)	325, 404, 453
CviAII	CATG	4 cut(s)	126, 141, 355, 488
CviQI	GTAC	3 cut(s)	325, 404, 453
DdeI	CTNAG	5 cut(s)	19, 93, 456, 464, 677
DpnI	GATC	5 cut(s)	47, 413, 486, 589, 594
DpnII	GATC	5 cut(s)	45, 411, 484, 587, 592
Eam1104I	CTCTTC	3 cut(s)	225, 258, 661
EarI	CTCTTC	3 cut(s)	225, 258, 661
EciI	GGCGGA	1 cut(s)	597
Eco130I	CCWWGG	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	125
EcoT22I	ATGCAT	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	4 cut(s)	129, 144, 358, 491
FatI	CATG	4 cut(s)	125, 140, 354, 487
FbaI	TGATCA	2 cut(s)	45, 484
Fnu4HI	GCNGC	3 cut(s)	65, 98, 309
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	3 cut(s)	65, 98, 309
GluI	GCNGC	3 cut(s)	65, 98, 309
GsuI	CTGGAG	1 cut(s)	547
Hin1II	CATG	4 cut(s)	129, 144, 358, 491
HinfI	GANTC	5 cut(s)	212, 391, 466, 553, 669
HphI	GGTGA	1 cut(s)	199
Hpy188I	TCNGA	4 cut(s)	41, 484, 592, 650
Hpy188III	TCNNGA	4 cut(s)	70, 295, 346, 564
HpyCH4V	TGCA	8 cut(s)	140, 183, 204, 272, 284, 422, 474, 655
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 180, 428
HpyF3I	CTNAG	5 cut(s)	19, 93, 456, 464, 677
Hsp92II	CATG	4 cut(s)	129, 144, 358, 491
KpnI	GGTACC	1 cut(s)	407
Ksp22I	TGATCA	2 cut(s)	45, 484
Kzo9I	GATC	5 cut(s)	45, 411, 484, 587, 592
LmnI	GCTCC	1 cut(s)	566
LpnPI	CCDG	6 cut(s)	65, 117, 289, 306, 500, 577
Lsp1109I	GCAGC	3 cut(s)	51, 84, 320
LweI	GCATC	1 cut(s)	213
MaeIII	GTNAC	4 cut(s)	88, 467, 490, 670
MalI	GATC	5 cut(s)	47, 413, 486, 589, 594
MboI	GATC	5 cut(s)	45, 411, 484, 587, 592
MboII	GAAGA	7 cut(s)	22, 212, 215, 238, 245, 283, 678
MfeI	CAATTG	1 cut(s)	111
MluCI	AATT	5 cut(s)	13, 111, 285, 396, 568
MlyI	GAGTC	3 cut(s)	475, 562, 678
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	2 cut(s)	111, 551
Mph1103I	ATGCAT	1 cut(s)	142
MseI	TTAA	1 cut(s)	636
MunI	CAATTG	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	657
MwoI	GCNNNNNNNGC	3 cut(s)	106, 180, 428
NcoI	CCATGG	1 cut(s)	125
NdeII	GATC	5 cut(s)	45, 411, 484, 587, 592
NlaIII	CATG	4 cut(s)	129, 144, 358, 491
NlaIV	GGNNCC	2 cut(s)	405, 562
NmuCI	GTSAC	2 cut(s)	467, 670
NsiI	ATGCAT	1 cut(s)	142
NspI	RCATGY	1 cut(s)	144
PctI	GAATGC	1 cut(s)	657
PfeI	GAWTC	2 cut(s)	212, 391
PkrI	GCNGC	3 cut(s)	66, 99, 310
PleI	GAGTC	3 cut(s)	474, 561, 677
PpsI	GAGTC	3 cut(s)	474, 561, 677
PspN4I	GGNNCC	2 cut(s)	405, 562
RsaI	GTAC	3 cut(s)	326, 405, 454
RsaNI	GTAC	3 cut(s)	325, 404, 453
SaqAI	TTAA	1 cut(s)	636
SatI	GCNGC	3 cut(s)	65, 98, 309
Sau3AI	GATC	5 cut(s)	45, 411, 484, 587, 592
SchI	GAGTC	3 cut(s)	475, 562, 678
SetI	ASST	4 cut(s)	10, 99, 151, 623
SfaNI	GCATC	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	5 cut(s)	13, 111, 285, 396, 568
SsiI	CCGC	2 cut(s)	407, 608
StyI	CCWWGG	1 cut(s)	125
TaqI	TCGA	1 cut(s)	551
TasI	AATT	5 cut(s)	13, 111, 285, 396, 568
TfiI	GAWTC	2 cut(s)	212, 391
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TscAI	CASTG	3 cut(s)	279, 468, 476
TseFI	GTSAC	2 cut(s)	467, 670
TseI	GCWGC	3 cut(s)	64, 97, 308
Tsp45I	GTSAC	2 cut(s)	467, 670
TspDTI	ATGAA	6 cut(s)	314, 343, 353, 498, 588, 650
TspRI	CASTG	3 cut(s)	279, 468, 476
XapI	RAATTY	1 cut(s)	13
XceI	RCATGY	1 cut(s)	144
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.