Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001809.1

Orthogroup ID

OG0010531

Physical Location & Seq

Genomic Coordinates Reverse (-)

222820 .. 223990

Gene Structure 1171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001809.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atgagagctttgaatttcttagtcaatatcttcggtgtcggagtgatcatctacactctctggctgctcaagaagtggcaggatggagttactgagctgcttcctgtcccaattgttcctaaaccatggtatattattcaactctgtatacctcacagaattcattgcttcatgctttgtttactctcctcgatcttcatgaaaagaagaggtgtgggaatggctgtctgtttcagcacactttgcagttatcttgttgctcattgcatcaccgattctactcttcttctcatatacatagtctttgtcttctctcttctttgccttgaagtggcagtggttgttgcaattttcttcaagatgaactggccagcgaaacttgcagagtacatagatgaccccaagttcaagaagttcatgttatttcatctttacttgtgtcgtctcattgcgattctaattttggtaccgcagatcaaatgtgtagttttagcaatcattctttgggctattggtaccgagccactgagtcactgcaactattctgatcatgtaactgactttagatattcatttctggtgataccaagcccagcatctttcctcaatatgtcgagtcgtggctccagaaattatgaagccttgccaagatcagatcaatgtgaatatccgccacggctgagctttttctcacatattaacagatttttcagaatgcagtttcatagaagagttacacttagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

248

Amino Acids

28.81

Weight (kDa)

9.24

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010531)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g36010
malus_domestica	MD06G1168200.v1.1 MD08G1117200.v1.1 MD15G1096800.v1.1
prunus_persica	Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1
pyrus_communis	pycom08g09780
rosa_chinensis	RchiOBHm_Chr6g0305861
rosa_laevigata	RLG00000010852
rosa_multiflora	Rmu_sc0001809.1_g000043
rosa_roxburghii	Rroxscaffold_7G00162270
rosa_rugosa	Rorug06G0344400
rosa_samantha	Rh6AG456200 Rh6BG445000 Rh6CG470200 Rh6DG456900
rosa_wichuraiana	Rw6G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	466, 515
AccB1I	GGYRCC	2 cut(s)	466, 515
AccI	GTMKAC	1 cut(s)	148
AciI	CCGC	2 cut(s)	470, 671
AcoI	YGGCCR	1 cut(s)	368
AcsI	RAATTY	2 cut(s)	13, 159
AfaI	GTAC	3 cut(s)	389, 468, 517
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	5 cut(s)	13, 140, 329, 358, 409
AluBI	AGCT	3 cut(s)	8, 97, 684
AluI	AGCT	3 cut(s)	8, 97, 684
Alw26I	GTCTC	1 cut(s)	449
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	2 cut(s)	64, 97
ApoI	RAATTY	2 cut(s)	13, 159
Asp718I	GGTACC	2 cut(s)	466, 515
AsuHPI	GGTGA	2 cut(s)	262, 592
BalI	TGGCCA	1 cut(s)	370
BanI	GGYRCC	2 cut(s)	466, 515
BbsI	GAAGAC	1 cut(s)	301
BbvI	GCAGC	2 cut(s)	51, 84
BccI	CCATC	1 cut(s)	77
BceAI	ACGGC	1 cut(s)	692
BclI	TGATCA	2 cut(s)	45, 547
BcoDI	GTCTC	1 cut(s)	449
BisI	GCNGC	2 cut(s)	65, 98
BlpI	GCTNAGC	1 cut(s)	680
BlsI	GCNGC	2 cut(s)	66, 99
BmiI	GGNNCC	3 cut(s)	468, 517, 625
BmsI	GCATC	2 cut(s)	276, 605
BpiI	GAAGAC	1 cut(s)	301
BpmI	CTGGAG	1 cut(s)	610
Bpu1102I	GCTNAGC	1 cut(s)	680
BpuEI	CTTGAG	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	125, 674
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse1I	ACTGG	1 cut(s)	371
Bse3DI	GCAATG	3 cut(s)	163, 262, 447
BseDI	CCNNGG	2 cut(s)	125, 674
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMI	GCAATG	3 cut(s)	163, 262, 447
BseMII	CTCAG	3 cut(s)	84, 518, 671
BseNI	ACTGG	1 cut(s)	371
BseRI	GAGGAG	1 cut(s)	178
BseXI	GCAGC	2 cut(s)	51, 84
BseYI	CCCAGC	1 cut(s)	592
BshFI	GGCC	1 cut(s)	370
BshNI	GGYRCC	2 cut(s)	466, 515
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	1 cut(s)	449
BsmBI	CGTCTC	1 cut(s)	449
BsmFI	GGGAC	1 cut(s)	92
BsmI	GAATGC	1 cut(s)	720
BsnI	GGCC	1 cut(s)	370
Bsp143I	GATC	6 cut(s)	45, 192, 474, 547, 650, 655
Bsp1720I	GCTNAGC	1 cut(s)	680
Bsp19I	CCATGG	1 cut(s)	125
BspACI	CCGC	2 cut(s)	470, 671
BspANI	GGCC	1 cut(s)	370
BspCNI	CTCAG	3 cut(s)	85, 519, 672
BspHI	TCATGA	1 cut(s)	198
BspLI	GGNNCC	3 cut(s)	468, 517, 625
BspT107I	GGYRCC	2 cut(s)	466, 515
BsrDI	GCAATG	3 cut(s)	163, 262, 447
BsrI	ACTGG	1 cut(s)	371
BssECI	CCNNGG	2 cut(s)	125, 674
BssMI	GATC	6 cut(s)	45, 192, 474, 547, 650, 655
BssNAI	GTATAC	1 cut(s)	149
BssT1I	CCWWGG	1 cut(s)	125
Bst1107I	GTATAC	1 cut(s)	149
Bst6I	CTCTTC	4 cut(s)	202, 288, 321, 724
BstAPI	GCANNNNNTGC	1 cut(s)	243
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	5 cut(s)	19, 93, 527, 680, 740
BstDSI	CCRYGG	2 cut(s)	125, 674
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	6 cut(s)	48, 195, 477, 550, 653, 658
BstMAI	GTCTC	1 cut(s)	449
BstMBI	GATC	6 cut(s)	45, 192, 474, 547, 650, 655
BstMWI	GCNNNNNNNGC	2 cut(s)	243, 380
BstV1I	GCAGC	2 cut(s)	51, 84
BstV2I	GAAGAC	1 cut(s)	301
BstZ17I	GTATAC	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	370
BtgI	CCRYGG	2 cut(s)	125, 674
BtsCI	GGATG	1 cut(s)	88
BtsI	GCAGTG	2 cut(s)	342, 532
BtsIMutI	CAGTG	3 cut(s)	342, 524, 532
Cac8I	GCNNGC	1 cut(s)	372
CciI	TCATGA	1 cut(s)	198
Csp6I	GTAC	3 cut(s)	388, 467, 516
CviAII	CATG	5 cut(s)	126, 172, 199, 418, 551
CviQI	GTAC	3 cut(s)	388, 467, 516
DdeI	CTNAG	5 cut(s)	19, 93, 527, 680, 740
DpnI	GATC	6 cut(s)	47, 194, 476, 549, 652, 657
DpnII	GATC	6 cut(s)	45, 192, 474, 547, 650, 655
EaeI	YGGCCR	1 cut(s)	368
Eam1104I	CTCTTC	4 cut(s)	202, 288, 321, 724
EarI	CTCTTC	4 cut(s)	202, 288, 321, 724
EciI	GGCGGA	1 cut(s)	660
Eco130I	CCWWGG	1 cut(s)	125
EcoRI	GAATTC	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	125
Esp3I	CGTCTC	1 cut(s)	449
FaeI	CATG	5 cut(s)	129, 175, 202, 421, 554
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	5 cut(s)	125, 171, 198, 417, 550
FbaI	TGATCA	2 cut(s)	45, 547
FblI	GTMKAC	1 cut(s)	148
Fnu4HI	GCNGC	2 cut(s)	65, 98
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	2 cut(s)	65, 98
GluI	GCNGC	2 cut(s)	65, 98
GsaI	CCCAGC	1 cut(s)	596
GsuI	CTGGAG	1 cut(s)	610
HaeIII	GGCC	1 cut(s)	370
Hin1II	CATG	5 cut(s)	129, 175, 202, 421, 554
HinfI	GANTC	4 cut(s)	275, 454, 529, 616
HphI	GGTGA	2 cut(s)	262, 592
Hpy166II	GTNNAC	2 cut(s)	149, 182
Hpy188I	TCNGA	4 cut(s)	41, 547, 655, 713
Hpy188III	TCNNGA	5 cut(s)	70, 199, 358, 409, 627
Hpy8I	GTNNAC	2 cut(s)	149, 182
HpyCH4V	TGCA	6 cut(s)	246, 267, 347, 383, 537, 718
HpyF10VI	GCNNNNNNNGC	2 cut(s)	243, 380
HpyF3I	CTNAG	5 cut(s)	19, 93, 527, 680, 740
Hsp92II	CATG	5 cut(s)	129, 175, 202, 421, 554
KpnI	GGTACC	2 cut(s)	470, 519
Ksp22I	TGATCA	2 cut(s)	45, 547
Kzo9I	GATC	6 cut(s)	45, 192, 474, 547, 650, 655
LmnI	GCTCC	1 cut(s)	629
LpnPI	CCDG	8 cut(s)	46, 65, 117, 352, 384, 563, 606, 640
Lsp1109I	GCAGC	2 cut(s)	51, 84
LweI	GCATC	2 cut(s)	276, 605
MaeIII	GTNAC	4 cut(s)	88, 530, 553, 733
MalI	GATC	6 cut(s)	47, 194, 476, 549, 652, 657
MboI	GATC	6 cut(s)	45, 192, 474, 547, 650, 655
MboII	GAAGA	9 cut(s)	22, 187, 219, 275, 278, 301, 308, 346, 741
MfeI	CAATTG	1 cut(s)	111
MlsI	TGGCCA	1 cut(s)	370
MluCI	AATT	6 cut(s)	13, 111, 159, 348, 459, 631
MluNI	TGGCCA	1 cut(s)	370
MlyI	GAGTC	2 cut(s)	538, 625
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	4 cut(s)	162, 199, 203, 614
Mox20I	TGGCCA	1 cut(s)	370
MscI	TGGCCA	1 cut(s)	370
MseI	TTAA	1 cut(s)	699
Msp20I	TGGCCA	1 cut(s)	370
MunI	CAATTG	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	720
MwoI	GCNNNNNNNGC	2 cut(s)	243, 380
NcoI	CCATGG	1 cut(s)	125
NdeII	GATC	6 cut(s)	45, 192, 474, 547, 650, 655
NlaIII	CATG	5 cut(s)	129, 175, 202, 421, 554
NlaIV	GGNNCC	3 cut(s)	468, 517, 625
NmuCI	GTSAC	1 cut(s)	530
PagI	TCATGA	1 cut(s)	198
PctI	GAATGC	1 cut(s)	720
PfeI	GAWTC	2 cut(s)	275, 454
PkrI	GCNGC	2 cut(s)	66, 99
PleI	GAGTC	2 cut(s)	537, 624
PpsI	GAGTC	2 cut(s)	537, 624
PspFI	CCCAGC	1 cut(s)	592
PspN4I	GGNNCC	3 cut(s)	468, 517, 625
RsaI	GTAC	3 cut(s)	389, 468, 517
RsaNI	GTAC	3 cut(s)	388, 467, 516
SaqAI	TTAA	1 cut(s)	699
SatI	GCNGC	2 cut(s)	65, 98
Sau3AI	GATC	6 cut(s)	45, 192, 474, 547, 650, 655
SchI	GAGTC	2 cut(s)	538, 625
SetI	ASST	5 cut(s)	10, 99, 154, 214, 686
SfaNI	GCATC	2 cut(s)	276, 605
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	6 cut(s)	13, 111, 159, 348, 459, 631
SsiI	CCGC	2 cut(s)	470, 671
StyI	CCWWGG	1 cut(s)	125
TaqI	TCGA	2 cut(s)	191, 614
TasI	AATT	6 cut(s)	13, 111, 159, 348, 459, 631
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	2 cut(s)	275, 454
Tru1I	TTAA	1 cut(s)	699
Tru9I	TTAA	1 cut(s)	699
TscAI	CASTG	3 cut(s)	342, 531, 539
TseFI	GTSAC	1 cut(s)	530
TseI	GCWGC	2 cut(s)	64, 97
Tsp45I	GTSAC	1 cut(s)	530
TspRI	CASTG	3 cut(s)	342, 531, 539
XapI	RAATTY	2 cut(s)	13, 159
XmiI	GTMKAC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.