Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0010531

Physical Location & Seq

Genomic Coordinates Forward (+)

66141068 .. 66142217

Gene Structure 1150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG445000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAGAGCTTTGAATTTCTTAGTCAATATCTTCGGTGCCGGAGTGATCATCTACACTCTATGGCTGCTCAAGAAGTGGCAGGATGGAGTTACTGAGCTGCCTCCTGTGCCCATTGTTCCTAAACCATGGTTTATATATGCATGTTTAGGTGTGGGAATGGCTGTCTGTTTCAGCACACTTTGCAGTTATCTTGTTGCTCATTGCATCACCGATTCTACTCTTCTTCTCATATACATAGTCTTTGTCTTCTCTCTTCTTTGCCTTGAAGTTGCAGTGGTTGTTGCAATTTTCTTCAAGATGAACTGGGCAGCGAAACTGGCAGAGTACATAGATGACCCCAAGTTCAAGAAGTTCATGTTATTTCATCTTTACTTGTGTCGTCTCATTGCGATTCTAATTTTGGTACCGCAGATCAAATGTGTAGTTTTAGCAATCATTCTTTGGGCTATTGGTAGCGAGCCACTGAGTCACTGCAACTATTCTGATCATGTAACTGACTTTAGATATTCATTTCTGGCGATACCAAGCCCAACATCTTTCCTCAATATGTCGAGTCGTGGCTCCAGAAATTATGAAGCCTTGCCAAGATCAGATCAATGTGAATATCCGCCACGGCAGAGCTTTTTCTCACATATTAACAGATTTTTCAGAATGCAGTTTCATAGAAGAGTCACACTTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

227

Amino Acids

26.14

Weight (kDa)

8.97

Isoelectric Point (pI)

40.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010531)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g36010
malus_domestica	MD06G1168200.v1.1 MD08G1117200.v1.1 MD15G1096800.v1.1
prunus_persica	Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1
pyrus_communis	pycom08g09780
rosa_chinensis	RchiOBHm_Chr6g0305861
rosa_laevigata	RLG00000010852
rosa_multiflora	Rmu_sc0001809.1_g000043
rosa_roxburghii	Rroxscaffold_7G00162270
rosa_rugosa	Rorug06G0344400
rosa_samantha	Rh6AG456200 Rh6BG445000 Rh6CG470200 Rh6DG456900
rosa_wichuraiana	Rw6G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	403
AccB1I	GGYRCC	2 cut(s)	35, 403
AciI	CCGC	2 cut(s)	407, 608
AcsI	RAATTY	1 cut(s)	13
AfaI	GTAC	2 cut(s)	326, 405
AgsI	TTSAA	4 cut(s)	13, 266, 295, 346
AluBI	AGCT	3 cut(s)	8, 97, 621
AluI	AGCT	3 cut(s)	8, 97, 621
Alw26I	GTCTC	1 cut(s)	386
ApeKI	GCWGC	3 cut(s)	64, 97, 308
ApoI	RAATTY	1 cut(s)	13
Asp718I	GGTACC	1 cut(s)	403
AsuHPI	GGTGA	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	111
BanI	GGYRCC	2 cut(s)	35, 403
BbsI	GAAGAC	1 cut(s)	238
BbvI	GCAGC	3 cut(s)	51, 84, 320
BccI	CCATC	1 cut(s)	77
BceAI	ACGGC	1 cut(s)	629
BclI	TGATCA	2 cut(s)	45, 484
BcoDI	GTCTC	1 cut(s)	386
BisI	GCNGC	3 cut(s)	65, 98, 309
BlsI	GCNGC	3 cut(s)	66, 99, 310
BmiI	GGNNCC	3 cut(s)	37, 405, 562
BmrI	ACTGGG	1 cut(s)	313
BmsI	GCATC	1 cut(s)	213
BmuI	ACTGGG	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	238
BpmI	CTGGAG	1 cut(s)	547
BpuEI	CTTGAG	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	125, 611
Bse1I	ACTGG	2 cut(s)	308, 321
Bse3DI	GCAATG	2 cut(s)	199, 384
BseDI	CCNNGG	2 cut(s)	125, 611
BseGI	GGATG	1 cut(s)	88
BseMI	GCAATG	2 cut(s)	199, 384
BseMII	CTCAG	2 cut(s)	84, 455
BseNI	ACTGG	2 cut(s)	308, 321
BseSI	GKGCMC	1 cut(s)	111
BseXI	GCAGC	3 cut(s)	51, 84, 320
BshNI	GGYRCC	2 cut(s)	35, 403
BsiSI	CCGG	1 cut(s)	39
BsmAI	GTCTC	1 cut(s)	386
BsmBI	CGTCTC	1 cut(s)	386
BsmI	GAATGC	1 cut(s)	657
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	5 cut(s)	45, 411, 484, 587, 592
Bsp19I	CCATGG	1 cut(s)	125
BspACI	CCGC	2 cut(s)	407, 608
BspCNI	CTCAG	2 cut(s)	85, 456
BspLI	GGNNCC	3 cut(s)	37, 405, 562
BspT107I	GGYRCC	2 cut(s)	35, 403
BsrDI	GCAATG	2 cut(s)	199, 384
BsrI	ACTGG	2 cut(s)	308, 321
BssECI	CCNNGG	2 cut(s)	125, 611
BssMI	GATC	5 cut(s)	45, 411, 484, 587, 592
BssT1I	CCWWGG	1 cut(s)	125
Bst6I	CTCTTC	3 cut(s)	225, 258, 661
BstAPI	GCANNNNNTGC	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	458
BstDEI	CTNAG	4 cut(s)	19, 93, 464, 677
BstDSI	CCRYGG	2 cut(s)	125, 611
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	5 cut(s)	48, 414, 487, 590, 595
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	5 cut(s)	45, 411, 484, 587, 592
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 180, 317
BstNSI	RCATGY	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	111
BstV1I	GCAGC	3 cut(s)	51, 84, 320
BstV2I	GAAGAC	1 cut(s)	238
BtgI	CCRYGG	2 cut(s)	125, 611
BtsCI	GGATG	1 cut(s)	88
BtsI	GCAGTG	2 cut(s)	279, 469
BtsIMutI	CAGTG	3 cut(s)	279, 461, 469
Cac8I	GCNNGC	1 cut(s)	458
Csp6I	GTAC	2 cut(s)	325, 404
CviAII	CATG	4 cut(s)	126, 141, 355, 488
CviQI	GTAC	2 cut(s)	325, 404
DdeI	CTNAG	4 cut(s)	19, 93, 464, 677
DpnI	GATC	5 cut(s)	47, 413, 486, 589, 594
DpnII	GATC	5 cut(s)	45, 411, 484, 587, 592
Eam1104I	CTCTTC	3 cut(s)	225, 258, 661
EarI	CTCTTC	3 cut(s)	225, 258, 661
EciI	GGCGGA	1 cut(s)	597
Eco130I	CCWWGG	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	125
EcoT22I	ATGCAT	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	125
Esp3I	CGTCTC	1 cut(s)	386
FaeI	CATG	4 cut(s)	129, 144, 358, 491
FatI	CATG	4 cut(s)	125, 140, 354, 487
FbaI	TGATCA	2 cut(s)	45, 484
Fnu4HI	GCNGC	3 cut(s)	65, 98, 309
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	3 cut(s)	65, 98, 309
GluI	GCNGC	3 cut(s)	65, 98, 309
GsuI	CTGGAG	1 cut(s)	547
HapII	CCGG	1 cut(s)	39
Hin1II	CATG	4 cut(s)	129, 144, 358, 491
HinfI	GANTC	5 cut(s)	212, 391, 466, 553, 669
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	1 cut(s)	199
Hpy188I	TCNGA	3 cut(s)	484, 592, 650
Hpy188III	TCNNGA	4 cut(s)	70, 295, 346, 564
HpyCH4V	TGCA	7 cut(s)	140, 183, 204, 272, 284, 474, 655
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 180, 317
HpyF3I	CTNAG	4 cut(s)	19, 93, 464, 677
Hsp92II	CATG	4 cut(s)	129, 144, 358, 491
KpnI	GGTACC	1 cut(s)	407
Ksp22I	TGATCA	2 cut(s)	45, 484
Kzo9I	GATC	5 cut(s)	45, 411, 484, 587, 592
LmnI	GCTCC	1 cut(s)	566
LpnPI	CCDG	7 cut(s)	52, 65, 117, 289, 302, 500, 577
Lsp1109I	GCAGC	3 cut(s)	51, 84, 320
LweI	GCATC	1 cut(s)	213
MaeIII	GTNAC	4 cut(s)	88, 467, 490, 670
MalI	GATC	5 cut(s)	47, 413, 486, 589, 594
MboI	GATC	5 cut(s)	45, 411, 484, 587, 592
MboII	GAAGA	7 cut(s)	22, 212, 215, 238, 245, 283, 678
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	4 cut(s)	13, 285, 396, 568
MlyI	GAGTC	3 cut(s)	475, 562, 678
MnlI	CCTC	2 cut(s)	111, 551
Mph1103I	ATGCAT	1 cut(s)	142
MseI	TTAA	1 cut(s)	636
MspI	CCGG	1 cut(s)	39
Mva1269I	GAATGC	1 cut(s)	657
MwoI	GCNNNNNNNGC	3 cut(s)	106, 180, 317
NcoI	CCATGG	1 cut(s)	125
NdeII	GATC	5 cut(s)	45, 411, 484, 587, 592
NlaIII	CATG	4 cut(s)	129, 144, 358, 491
NlaIV	GGNNCC	3 cut(s)	37, 405, 562
NmuCI	GTSAC	2 cut(s)	467, 670
NsiI	ATGCAT	1 cut(s)	142
NspI	RCATGY	1 cut(s)	144
PctI	GAATGC	1 cut(s)	657
PfeI	GAWTC	2 cut(s)	212, 391
PkrI	GCNGC	3 cut(s)	66, 99, 310
PleI	GAGTC	3 cut(s)	474, 561, 677
PpsI	GAGTC	3 cut(s)	474, 561, 677
PspN4I	GGNNCC	3 cut(s)	37, 405, 562
RsaI	GTAC	2 cut(s)	326, 405
RsaNI	GTAC	2 cut(s)	325, 404
SaqAI	TTAA	1 cut(s)	636
SatI	GCNGC	3 cut(s)	65, 98, 309
Sau3AI	GATC	5 cut(s)	45, 411, 484, 587, 592
SchI	GAGTC	3 cut(s)	475, 562, 678
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	4 cut(s)	10, 99, 151, 623
SfaNI	GCATC	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	4 cut(s)	13, 285, 396, 568
SsiI	CCGC	2 cut(s)	407, 608
StyI	CCWWGG	1 cut(s)	125
TaqI	TCGA	1 cut(s)	551
TasI	AATT	4 cut(s)	13, 285, 396, 568
TatI	WGTACW	1 cut(s)	324
TfiI	GAWTC	2 cut(s)	212, 391
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TscAI	CASTG	3 cut(s)	279, 468, 476
TseFI	GTSAC	2 cut(s)	467, 670
TseI	GCWGC	3 cut(s)	64, 97, 308
Tsp45I	GTSAC	2 cut(s)	467, 670
TspDTI	ATGAA	6 cut(s)	314, 343, 353, 498, 588, 650
TspRI	CASTG	3 cut(s)	279, 468, 476
XapI	RAATTY	1 cut(s)	13
XceI	RCATGY	1 cut(s)	144
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.