Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0010531

Physical Location & Seq

Genomic Coordinates Reverse (-)

62729962 .. 62731695

Gene Structure 1734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG456900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGAGTTACTGAGCTGCCTCCTGTGCCCATTGTTCCTAAACCATGGTGTGGGAATGGCTGTCTGTTTCAGCACACTTTGCAGTTATCTTGTTGCTCATTGCATCACCGATTCTACTCTTCTTCTCATATACATAGTCTTTGTCTTCTCTCTTCTTTGCCTTGAAGTTGCAGTGGTTGTTGCAATTTTCTTCAAGATGAACTGGGCAGCGAAACTTGCAGAGTACATAGATGACCCCAAGTTCAAGAAGTTCATGTTATTTAATCTTTACTTGTGTCGTGTCATTGCGATTCTAATTTTGGTACCGCAGATCAAATGTGTAGTTTTAGCAATCATTCTTTGGGCTATTGGTAGCGAGCCACTGAGTCACTGCAACTATTCTGATCATGTAACTGACTTTAGATATTCATTTCTGGTGACACCAAGCCCAACATCTTTCCTCAGTATTATGTCGAGTCGTGGCTCCAGAAATTATGAAGCCTTGCCAAGATCAGATCAATGTGAATATCCGCCACGGCAGAGCTTTTTCTCACATATTAACACATTTTTCAGAATGCAGTTTCATGGAAGAGTCACACTTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

194

Amino Acids

22.15

Weight (kDa)

8.04

Isoelectric Point (pI)

33.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010531)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g36010
malus_domestica	MD06G1168200.v1.1 MD08G1117200.v1.1 MD15G1096800.v1.1
prunus_persica	Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1
pyrus_communis	pycom08g09780
rosa_chinensis	RchiOBHm_Chr6g0305861
rosa_laevigata	RLG00000010852
rosa_multiflora	Rmu_sc0001809.1_g000043
rosa_roxburghii	Rroxscaffold_7G00162270
rosa_rugosa	Rorug06G0344400
rosa_samantha	Rh6AG456200 Rh6BG445000 Rh6CG470200 Rh6DG456900
rosa_wichuraiana	Rw6G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	301
AccB1I	GGYRCC	1 cut(s)	301
AccB7I	CCANNNNNTGG	1 cut(s)	49
AciI	CCGC	2 cut(s)	305, 509
AfaI	GTAC	2 cut(s)	224, 303
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	3 cut(s)	164, 193, 244
AluBI	AGCT	2 cut(s)	15, 522
AluI	AGCT	2 cut(s)	15, 522
ApeKI	GCWGC	2 cut(s)	15, 206
Asp718I	GGTACC	1 cut(s)	301
AsuHPI	GGTGA	2 cut(s)	97, 427
BaeGI	GKGCMC	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	301
BbsI	GAAGAC	1 cut(s)	136
BbvI	GCAGC	2 cut(s)	2, 218
BceAI	ACGGC	1 cut(s)	530
BclI	TGATCA	1 cut(s)	382
BisI	GCNGC	2 cut(s)	16, 207
BlsI	GCNGC	2 cut(s)	17, 208
BmiI	GGNNCC	2 cut(s)	303, 463
BmrI	ACTGGG	1 cut(s)	211
BmsI	GCATC	1 cut(s)	111
BmuI	ACTGGG	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	136
BpmI	CTGGAG	1 cut(s)	448
BsaJI	CCNNGG	2 cut(s)	43, 512
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse1I	ACTGG	1 cut(s)	206
Bse3DI	GCAATG	2 cut(s)	97, 282
BseDI	CCNNGG	2 cut(s)	43, 512
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMI	GCAATG	2 cut(s)	97, 282
BseMII	CTCAG	2 cut(s)	353, 454
BseNI	ACTGG	1 cut(s)	206
BseSI	GKGCMC	1 cut(s)	29
BseXI	GCAGC	2 cut(s)	2, 218
BshNI	GGYRCC	1 cut(s)	301
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmI	GAATGC	1 cut(s)	558
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	4 cut(s)	309, 382, 488, 493
Bsp19I	CCATGG	1 cut(s)	43
BspACI	CCGC	2 cut(s)	305, 509
BspCNI	CTCAG	2 cut(s)	354, 453
BspLI	GGNNCC	2 cut(s)	303, 463
BspT107I	GGYRCC	1 cut(s)	301
BsrDI	GCAATG	2 cut(s)	97, 282
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	2 cut(s)	43, 512
BssMI	GATC	4 cut(s)	309, 382, 488, 493
BssT1I	CCWWGG	1 cut(s)	43
Bst6I	CTCTTC	3 cut(s)	123, 156, 562
BstAPI	GCANNNNNTGC	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	356
BstDEI	CTNAG	4 cut(s)	11, 362, 440, 578
BstDSI	CCRYGG	2 cut(s)	43, 512
BstKTI	GATC	4 cut(s)	312, 385, 491, 496
BstMBI	GATC	4 cut(s)	309, 382, 488, 493
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 78, 215
BstSLI	GKGCMC	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	2, 218
BstV2I	GAAGAC	1 cut(s)	136
BtgI	CCRYGG	2 cut(s)	43, 512
BtsI	GCAGTG	2 cut(s)	177, 367
BtsIMutI	CAGTG	3 cut(s)	177, 359, 367
Cac8I	GCNNGC	1 cut(s)	356
Csp6I	GTAC	2 cut(s)	223, 302
CviAII	CATG	4 cut(s)	44, 253, 386, 563
CviJI	RGCY	8 cut(s)	15, 59, 344, 358, 426, 462, 479, 522
CviKI_1	RGCY	8 cut(s)	15, 59, 344, 358, 426, 462, 479, 522
CviQI	GTAC	2 cut(s)	223, 302
DdeI	CTNAG	4 cut(s)	11, 362, 440, 578
DpnI	GATC	4 cut(s)	311, 384, 490, 495
DpnII	GATC	4 cut(s)	309, 382, 488, 493
Eam1104I	CTCTTC	3 cut(s)	123, 156, 562
EarI	CTCTTC	3 cut(s)	123, 156, 562
EciI	GGCGGA	1 cut(s)	498
Eco130I	CCWWGG	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	43
ErhI	CCWWGG	1 cut(s)	43
FaeI	CATG	4 cut(s)	47, 256, 389, 566
FatI	CATG	4 cut(s)	43, 252, 385, 562
FbaI	TGATCA	1 cut(s)	382
Fnu4HI	GCNGC	2 cut(s)	16, 207
Fsp4HI	GCNGC	2 cut(s)	16, 207
GluI	GCNGC	2 cut(s)	16, 207
GsuI	CTGGAG	1 cut(s)	448
Hin1II	CATG	4 cut(s)	47, 256, 389, 566
HinfI	GANTC	5 cut(s)	110, 289, 364, 454, 570
HphI	GGTGA	2 cut(s)	97, 427
Hpy188I	TCNGA	3 cut(s)	382, 493, 551
Hpy188III	TCNNGA	3 cut(s)	193, 244, 465
HpyCH4V	TGCA	7 cut(s)	81, 102, 170, 182, 218, 372, 556
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 78, 215
HpyF3I	CTNAG	4 cut(s)	11, 362, 440, 578
Hsp92II	CATG	4 cut(s)	47, 256, 389, 566
KpnI	GGTACC	1 cut(s)	305
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	4 cut(s)	309, 382, 488, 493
LmnI	GCTCC	1 cut(s)	467
LpnPI	CCDG	4 cut(s)	35, 187, 398, 478
Lsp1109I	GCAGC	2 cut(s)	2, 218
LweI	GCATC	1 cut(s)	111
MaeIII	GTNAC	5 cut(s)	6, 365, 388, 415, 571
MalI	GATC	4 cut(s)	311, 384, 490, 495
MboI	GATC	4 cut(s)	309, 382, 488, 493
MboII	GAAGA	6 cut(s)	110, 113, 136, 143, 181, 579
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	3 cut(s)	183, 294, 469
MlyI	GAGTC	3 cut(s)	373, 463, 579
MnlI	CCTC	2 cut(s)	29, 449
MseI	TTAA	3 cut(s)	261, 537, 583
Mva1269I	GAATGC	1 cut(s)	558
MwoI	GCNNNNNNNGC	3 cut(s)	24, 78, 215
NcoI	CCATGG	1 cut(s)	43
NdeII	GATC	4 cut(s)	309, 382, 488, 493
NlaIII	CATG	4 cut(s)	47, 256, 389, 566
NlaIV	GGNNCC	2 cut(s)	303, 463
NmuCI	GTSAC	3 cut(s)	365, 415, 571
PctI	GAATGC	1 cut(s)	558
PfeI	GAWTC	2 cut(s)	110, 289
PflMI	CCANNNNNTGG	1 cut(s)	49
PkrI	GCNGC	2 cut(s)	17, 208
PleI	GAGTC	3 cut(s)	372, 462, 578
PpsI	GAGTC	3 cut(s)	372, 462, 578
PspN4I	GGNNCC	2 cut(s)	303, 463
RsaI	GTAC	2 cut(s)	224, 303
RsaNI	GTAC	2 cut(s)	223, 302
SaqAI	TTAA	3 cut(s)	261, 537, 583
SatI	GCNGC	2 cut(s)	16, 207
Sau3AI	GATC	4 cut(s)	309, 382, 488, 493
SchI	GAGTC	3 cut(s)	373, 463, 579
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	2 cut(s)	17, 524
SfaNI	GCATC	1 cut(s)	111
Sse9I	AATT	3 cut(s)	183, 294, 469
SsiI	CCGC	2 cut(s)	305, 509
StyI	CCWWGG	1 cut(s)	43
TaqI	TCGA	1 cut(s)	452
TasI	AATT	3 cut(s)	183, 294, 469
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	2 cut(s)	110, 289
Tru1I	TTAA	3 cut(s)	261, 537, 583
Tru9I	TTAA	3 cut(s)	261, 537, 583
TscAI	CASTG	3 cut(s)	177, 366, 374
TseFI	GTSAC	3 cut(s)	365, 415, 571
TseI	GCWGC	2 cut(s)	15, 206
Tsp45I	GTSAC	3 cut(s)	365, 415, 571
TspDTI	ATGAA	5 cut(s)	212, 241, 396, 489, 551
TspRI	CASTG	3 cut(s)	177, 366, 374
Van91I	CCANNNNNTGG	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.