Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010531

Physical Location & Seq

Genomic Coordinates Reverse (-)

64105359 .. 64106544

Gene Structure 1186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG470200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGTATACTGTGCAAGATGTTGCTTGCACAACTCAATGAGAGCTTTGAATTTCTTAGTCAATATCTTCGGTGCCGGAGTGATCATCTACACTCTATGGCTGCTCAAGAAGTGGCAGGATGGAGTTACTGAGCTGCCTCCTGTGCCCATTGTTCCTAAACCATGGTTTATATATGCATGTTTAGGTGTGGGAATGGCCGTCTGTTTCAGCACACTTTGCAGTTATCTTGTTGCTCATTGCATCACCGATTCTACTCTTCTTCTCATATACATAGTCTTTGTCTTCTCTCTTCTTTGCCTTGAAGTTGCAGTGGTTGTTGCAATTTTCTTCAAGATGAACTGGGCAGCGAAACTTGCAGAGTACATAGATGACCCCAAGTTCAAGAAGTTCATGTTATTTCATCTTTACTTGTGTCGTCTCATTGCGATTCTAATTTTGGTACCGCAGATCAAATGTGTAGTTTTAGCAATCATTCTTTGGGCTATTGGTAGCGAGCCACTGAGTCACTGCAACTATTCTGATCATGTAACTGACTTTAGATATTCATTTCTGGCGATACCAAGCCCAACATCTTTCCTCAATATGTCGAGTCGTGGCTCCAGAAATTATGAAGCCTTGCCAAGATCAGATCAATGTGAATATCCGCCACGGCAGAGCTTTTTCTCACATATTAACAGATTTTTCAGAATGCAGTTTCATAGAAGAGTCACACTTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

239

Amino Acids

27.52

Weight (kDa)

8.92

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010531)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g36010
malus_domestica	MD06G1168200.v1.1 MD08G1117200.v1.1 MD15G1096800.v1.1
prunus_persica	Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1
pyrus_communis	pycom08g09780
rosa_chinensis	RchiOBHm_Chr6g0305861
rosa_laevigata	RLG00000010852
rosa_multiflora	Rmu_sc0001809.1_g000043
rosa_roxburghii	Rroxscaffold_7G00162270
rosa_rugosa	Rorug06G0344400
rosa_samantha	Rh6AG456200 Rh6BG445000 Rh6CG470200 Rh6DG456900
rosa_wichuraiana	Rw6G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	439
AccB1I	GGYRCC	2 cut(s)	71, 439
AccI	GTMKAC	1 cut(s)	6
AciI	CCGC	2 cut(s)	443, 644
AcoI	YGGCCR	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	49
AfaI	GTAC	2 cut(s)	362, 441
AgsI	TTSAA	4 cut(s)	49, 302, 331, 382
AluBI	AGCT	3 cut(s)	44, 133, 657
AluI	AGCT	3 cut(s)	44, 133, 657
Alw26I	GTCTC	1 cut(s)	422
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	3 cut(s)	100, 133, 344
ApoI	RAATTY	1 cut(s)	49
Asp718I	GGTACC	1 cut(s)	439
AsuHPI	GGTGA	1 cut(s)	235
BaeGI	GKGCMC	1 cut(s)	147
BanI	GGYRCC	2 cut(s)	71, 439
BbsI	GAAGAC	1 cut(s)	274
BbvI	GCAGC	3 cut(s)	87, 120, 356
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	2 cut(s)	182, 665
BclI	TGATCA	2 cut(s)	81, 520
BcoDI	GTCTC	1 cut(s)	422
BisI	GCNGC	3 cut(s)	101, 134, 345
BlsI	GCNGC	3 cut(s)	102, 135, 346
BmiI	GGNNCC	3 cut(s)	73, 441, 598
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	1 cut(s)	249
BmuI	ACTGGG	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	274
BpmI	CTGGAG	1 cut(s)	583
BpuEI	CTTGAG	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	161, 647
Bse1I	ACTGG	1 cut(s)	344
Bse3DI	GCAATG	2 cut(s)	235, 420
BseDI	CCNNGG	2 cut(s)	161, 647
BseGI	GGATG	1 cut(s)	124
BseMI	GCAATG	2 cut(s)	235, 420
BseMII	CTCAG	2 cut(s)	120, 491
BseNI	ACTGG	1 cut(s)	344
BseSI	GKGCMC	1 cut(s)	147
BseXI	GCAGC	3 cut(s)	87, 120, 356
BshFI	GGCC	1 cut(s)	197
BshNI	GGYRCC	2 cut(s)	71, 439
BsiSI	CCGG	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	422
BsmBI	CGTCTC	1 cut(s)	422
BsmI	GAATGC	1 cut(s)	693
BsnI	GGCC	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	5 cut(s)	81, 447, 520, 623, 628
Bsp19I	CCATGG	1 cut(s)	161
BspACI	CCGC	2 cut(s)	443, 644
BspANI	GGCC	1 cut(s)	197
BspCNI	CTCAG	2 cut(s)	121, 492
BspLI	GGNNCC	3 cut(s)	73, 441, 598
BspT107I	GGYRCC	2 cut(s)	71, 439
BsrDI	GCAATG	2 cut(s)	235, 420
BsrI	ACTGG	1 cut(s)	344
BssECI	CCNNGG	2 cut(s)	161, 647
BssMI	GATC	5 cut(s)	81, 447, 520, 623, 628
BssNAI	GTATAC	1 cut(s)	7
BssT1I	CCWWGG	1 cut(s)	161
Bst1107I	GTATAC	1 cut(s)	7
Bst4CI	ACNGT	1 cut(s)	11
Bst6I	CTCTTC	3 cut(s)	261, 294, 697
BstAPI	GCANNNNNTGC	1 cut(s)	216
BstC8I	GCNNGC	2 cut(s)	26, 494
BstDEI	CTNAG	4 cut(s)	55, 129, 500, 713
BstDSI	CCRYGG	2 cut(s)	161, 647
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	5 cut(s)	84, 450, 523, 626, 631
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	5 cut(s)	81, 447, 520, 623, 628
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 216, 353
BstNSI	RCATGY	1 cut(s)	180
BstSLI	GKGCMC	1 cut(s)	147
BstV1I	GCAGC	3 cut(s)	87, 120, 356
BstV2I	GAAGAC	1 cut(s)	274
BstZ17I	GTATAC	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	197
BtgI	CCRYGG	2 cut(s)	161, 647
BtsCI	GGATG	1 cut(s)	124
BtsI	GCAGTG	2 cut(s)	315, 505
BtsIMutI	CAGTG	3 cut(s)	315, 497, 505
Cac8I	GCNNGC	2 cut(s)	26, 494
Csp6I	GTAC	2 cut(s)	361, 440
CviAII	CATG	4 cut(s)	162, 177, 391, 524
CviQI	GTAC	2 cut(s)	361, 440
DdeI	CTNAG	4 cut(s)	55, 129, 500, 713
DpnI	GATC	5 cut(s)	83, 449, 522, 625, 630
DpnII	GATC	5 cut(s)	81, 447, 520, 623, 628
EaeI	YGGCCR	1 cut(s)	195
Eam1104I	CTCTTC	3 cut(s)	261, 294, 697
EarI	CTCTTC	3 cut(s)	261, 294, 697
EciI	GGCGGA	1 cut(s)	633
Eco130I	CCWWGG	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	161
EcoT22I	ATGCAT	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	161
Esp3I	CGTCTC	1 cut(s)	422
FaeI	CATG	4 cut(s)	165, 180, 394, 527
FatI	CATG	4 cut(s)	161, 176, 390, 523
FbaI	TGATCA	2 cut(s)	81, 520
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	3 cut(s)	101, 134, 345
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	3 cut(s)	101, 134, 345
GluI	GCNGC	3 cut(s)	101, 134, 345
GsuI	CTGGAG	1 cut(s)	583
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	1 cut(s)	75
Hin1II	CATG	4 cut(s)	165, 180, 394, 527
HinfI	GANTC	5 cut(s)	248, 427, 502, 589, 705
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	3 cut(s)	520, 628, 686
Hpy188III	TCNNGA	4 cut(s)	106, 331, 382, 600
Hpy8I	GTNNAC	1 cut(s)	7
HpyCH4III	ACNGT	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 216, 353
HpyF3I	CTNAG	4 cut(s)	55, 129, 500, 713
Hsp92II	CATG	4 cut(s)	165, 180, 394, 527
KpnI	GGTACC	1 cut(s)	443
Ksp22I	TGATCA	2 cut(s)	81, 520
Kzo9I	GATC	5 cut(s)	81, 447, 520, 623, 628
LmnI	GCTCC	1 cut(s)	602
LpnPI	CCDG	6 cut(s)	88, 101, 153, 325, 536, 613
Lsp1109I	GCAGC	3 cut(s)	87, 120, 356
LweI	GCATC	1 cut(s)	249
MaeIII	GTNAC	4 cut(s)	124, 503, 526, 706
MalI	GATC	5 cut(s)	83, 449, 522, 625, 630
MboI	GATC	5 cut(s)	81, 447, 520, 623, 628
MboII	GAAGA	7 cut(s)	58, 248, 251, 274, 281, 319, 714
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	4 cut(s)	49, 321, 432, 604
MlyI	GAGTC	3 cut(s)	511, 598, 714
MnlI	CCTC	2 cut(s)	147, 587
Mph1103I	ATGCAT	1 cut(s)	178
MseI	TTAA	1 cut(s)	672
MspI	CCGG	1 cut(s)	75
Mva1269I	GAATGC	1 cut(s)	693
MwoI	GCNNNNNNNGC	3 cut(s)	142, 216, 353
NcoI	CCATGG	1 cut(s)	161
NdeII	GATC	5 cut(s)	81, 447, 520, 623, 628
NlaIII	CATG	4 cut(s)	165, 180, 394, 527
NlaIV	GGNNCC	3 cut(s)	73, 441, 598
NmuCI	GTSAC	2 cut(s)	503, 706
NsiI	ATGCAT	1 cut(s)	178
NspI	RCATGY	1 cut(s)	180
PctI	GAATGC	1 cut(s)	693
PfeI	GAWTC	2 cut(s)	248, 427
PkrI	GCNGC	3 cut(s)	102, 135, 346
PleI	GAGTC	3 cut(s)	510, 597, 713
PpsI	GAGTC	3 cut(s)	510, 597, 713
PspN4I	GGNNCC	3 cut(s)	73, 441, 598
RsaI	GTAC	2 cut(s)	362, 441
RsaNI	GTAC	2 cut(s)	361, 440
SaqAI	TTAA	1 cut(s)	672
SatI	GCNGC	3 cut(s)	101, 134, 345
Sau3AI	GATC	5 cut(s)	81, 447, 520, 623, 628
SchI	GAGTC	3 cut(s)	511, 598, 714
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	4 cut(s)	46, 135, 187, 659
SfaNI	GCATC	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	4 cut(s)	49, 321, 432, 604
SsiI	CCGC	2 cut(s)	443, 644
StyI	CCWWGG	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	11
TaqI	TCGA	1 cut(s)	587
TasI	AATT	4 cut(s)	49, 321, 432, 604
TatI	WGTACW	1 cut(s)	360
TfiI	GAWTC	2 cut(s)	248, 427
Tru1I	TTAA	1 cut(s)	672
Tru9I	TTAA	1 cut(s)	672
TscAI	CASTG	3 cut(s)	315, 504, 512
TseFI	GTSAC	2 cut(s)	503, 706
TseI	GCWGC	3 cut(s)	100, 133, 344
Tsp45I	GTSAC	2 cut(s)	503, 706
TspDTI	ATGAA	6 cut(s)	350, 379, 389, 534, 624, 686
TspRI	CASTG	3 cut(s)	315, 504, 512
XapI	RAATTY	1 cut(s)	49
XceI	RCATGY	1 cut(s)	180
XmiI	GTMKAC	1 cut(s)	6
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.