RchiOBHm_Chr6g0305861

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010531
Physical Location & Seq
Reverse (-)
64694312 .. 64695865
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27488

Sequence Viewer

Length: 720 bp
ATGGTATACTGTGCAAGATGTTGCTTGCACAACTCAATGAGAGCTTTGAATTTCTTAGTCAATATCTTCGGTGTCGGAGTGATCATCTACACTCTCTGGCTGCTCAAGAAGTGGCAGGATGGAGTTACTGAGCTGCTTCCTGTCCCAATTGTTCCTAAACCATGGTTTATATATGCATGTTTAGGTGTGGGAATGGCTGTCTGTTTCAGCACACTTTGCAGTTATCTTGTTGCTCATTGCATCACCGATTCTACTTTTCTTCTCATGTACATAGTCTTTGTCTTCTCTCTTCTTTGCCTTGAAGTGGCAGTGGTTGTTGCAATTTTCTTCAAGATGAACTGGCCAGCGAAACTTGCAGAGTACATAGATGACCCCAGGTTCAAGAAGTTCATGTTATTTCATCTTTACTTGTGTCGTCTCATTGCGATTCTAATATTGGTACCGCAGATCAAATGTGTAGTTTTAGCAATCATTCTTTGGGCTATTGGTACCGAGCCACTGAGTCACTGCAACTATTCTGATCATGTAACTGACTTTAGATATTCATTTCTGGTGATACCAAGCCCAGCATCTTTCCTCAATATGTCGGGTCGTGGCTCCAGAAATTATGAAGCCTTGCCAAGATCAGATCAATGTGAATATCGGCCACGGCTGAGTTTTTTCTCACATATTAACAGATTTTTCAGAATGCAGTTTCATAGAAGAGTTACACTTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

239

Amino Acids

27.7

Weight (kDa)

9.03

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 439, 488
AccB1I GGYRCC 2 cut(s) 439, 488
AccI GTMKAC 1 cut(s) 6
AciI CCGC 1 cut(s) 443
AcoI YGGCCR 2 cut(s) 341, 644
AcsI RAATTY 1 cut(s) 49
AfaI GTAC 4 cut(s) 269, 362, 441, 490
AfiI CCNNNNNNNGG 1 cut(s) 304
AgsI TTSAA 4 cut(s) 49, 302, 331, 382
AjnI CCWGG 1 cut(s) 374
AluBI AGCT 2 cut(s) 44, 133
AluI AGCT 2 cut(s) 44, 133
Alw26I GTCTC 1 cut(s) 422
AoxI GGCC 2 cut(s) 341, 644
ApeKI GCWGC 2 cut(s) 100, 133
ApoI RAATTY 1 cut(s) 49
Asp718I GGTACC 2 cut(s) 439, 488
AsuHPI GGTGA 2 cut(s) 235, 565
BalI TGGCCA 1 cut(s) 343
BanI GGYRCC 2 cut(s) 439, 488
BbsI GAAGAC 1 cut(s) 274
BbvI GCAGC 2 cut(s) 87, 120
BccI CCATC 1 cut(s) 113
BceAI ACGGC 1 cut(s) 665
BciT130I CCWGG 1 cut(s) 376
BclI TGATCA 2 cut(s) 81, 520
BcoDI GTCTC 1 cut(s) 422
BisI GCNGC 2 cut(s) 101, 134
BlsI GCNGC 2 cut(s) 102, 135
Bme1390I CCNGG 1 cut(s) 376
BmiI GGNNCC 3 cut(s) 441, 490, 598
BmrFI CCNGG 1 cut(s) 376
BmsI GCATC 2 cut(s) 249, 578
BpiI GAAGAC 1 cut(s) 274
BpmI CTGGAG 1 cut(s) 583
BpuEI CTTGAG 1 cut(s) 89
BsaJI CCNNGG 3 cut(s) 161, 374, 647
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse1I ACTGG 1 cut(s) 344
Bse3DI GCAATG 2 cut(s) 235, 420
BseBI CCWGG 1 cut(s) 376
BseDI CCNNGG 3 cut(s) 161, 374, 647
BseGI GGATG 1 cut(s) 124
BseLI CCNNNNNNNGG 1 cut(s) 304
BseMI GCAATG 2 cut(s) 235, 420
BseMII CTCAG 3 cut(s) 120, 491, 644
BseNI ACTGG 1 cut(s) 344
BseXI GCAGC 2 cut(s) 87, 120
BseYI CCCAGC 1 cut(s) 565
BshFI GGCC 2 cut(s) 343, 646
BshNI GGYRCC 2 cut(s) 439, 488
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 304
BsmAI GTCTC 1 cut(s) 422
BsmBI CGTCTC 1 cut(s) 422
BsmFI GGGAC 1 cut(s) 128
BsmI GAATGC 1 cut(s) 693
BsnI GGCC 2 cut(s) 343, 646
Bsp1407I TGTACA 1 cut(s) 267
Bsp143I GATC 5 cut(s) 81, 447, 520, 623, 628
Bsp19I CCATGG 1 cut(s) 161
BspACI CCGC 1 cut(s) 443
BspANI GGCC 2 cut(s) 343, 646
BspCNI CTCAG 3 cut(s) 121, 492, 645
BspLI GGNNCC 3 cut(s) 441, 490, 598
BspT107I GGYRCC 2 cut(s) 439, 488
BsrDI GCAATG 2 cut(s) 235, 420
BsrGI TGTACA 1 cut(s) 267
BsrI ACTGG 1 cut(s) 344
BssECI CCNNGG 3 cut(s) 161, 374, 647
BssMI GATC 5 cut(s) 81, 447, 520, 623, 628
BssNAI GTATAC 1 cut(s) 7
BssT1I CCWWGG 1 cut(s) 161
Bst1107I GTATAC 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 376
Bst4CI ACNGT 1 cut(s) 11
Bst6I CTCTTC 2 cut(s) 294, 697
BstAPI GCANNNNNTGC 1 cut(s) 216
BstAUI TGTACA 1 cut(s) 267
BstC8I GCNNGC 2 cut(s) 26, 345
BstDEI CTNAG 5 cut(s) 55, 129, 500, 653, 713
BstDSI CCRYGG 2 cut(s) 161, 647
BstF5I GGATG 1 cut(s) 124
BstKTI GATC 5 cut(s) 84, 450, 523, 626, 631
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 5 cut(s) 81, 447, 520, 623, 628
BstMWI GCNNNNNNNGC 2 cut(s) 216, 353
BstNI CCWGG 1 cut(s) 376
BstNSI RCATGY 1 cut(s) 180
BstSCI CCNGG 1 cut(s) 374
BstV1I GCAGC 2 cut(s) 87, 120
BstV2I GAAGAC 1 cut(s) 274
BstZ17I GTATAC 1 cut(s) 7
BsuRI GGCC 2 cut(s) 343, 646
BtgI CCRYGG 2 cut(s) 161, 647
BtsCI GGATG 1 cut(s) 124
BtsI GCAGTG 2 cut(s) 315, 505
BtsIMutI CAGTG 3 cut(s) 315, 497, 505
Cac8I GCNNGC 2 cut(s) 26, 345
Csp6I GTAC 4 cut(s) 268, 361, 440, 489
CviAII CATG 5 cut(s) 162, 177, 265, 391, 524
CviQI GTAC 4 cut(s) 268, 361, 440, 489
DdeI CTNAG 5 cut(s) 55, 129, 500, 653, 713
DpnI GATC 5 cut(s) 83, 449, 522, 625, 630
DpnII GATC 5 cut(s) 81, 447, 520, 623, 628
EaeI YGGCCR 2 cut(s) 341, 644
Eam1104I CTCTTC 2 cut(s) 294, 697
EarI CTCTTC 2 cut(s) 294, 697
Eco130I CCWWGG 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 374
EcoT14I CCWWGG 1 cut(s) 161
EcoT22I ATGCAT 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 161
Esp3I CGTCTC 1 cut(s) 422
FaeI CATG 5 cut(s) 165, 180, 268, 394, 527
FaqI GGGAC 1 cut(s) 128
FatI CATG 5 cut(s) 161, 176, 264, 390, 523
FbaI TGATCA 2 cut(s) 81, 520
FblI GTMKAC 1 cut(s) 6
Fnu4HI GCNGC 2 cut(s) 101, 134
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 2 cut(s) 101, 134
GluI GCNGC 2 cut(s) 101, 134
GsaI CCCAGC 1 cut(s) 569
GsuI CTGGAG 1 cut(s) 583
HaeIII GGCC 2 cut(s) 343, 646
Hin1II CATG 5 cut(s) 165, 180, 268, 394, 527
HinfI GANTC 3 cut(s) 248, 427, 502
HphI GGTGA 2 cut(s) 235, 565
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 4 cut(s) 77, 520, 628, 686
Hpy188III TCNNGA 4 cut(s) 106, 331, 382, 600
Hpy8I GTNNAC 1 cut(s) 7
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4V TGCA 9 cut(s) 14, 28, 176, 219, 240, 320, 356, 510, 691
HpyF10VI GCNNNNNNNGC 2 cut(s) 216, 353
HpyF3I CTNAG 5 cut(s) 55, 129, 500, 653, 713
Hsp92II CATG 5 cut(s) 165, 180, 268, 394, 527
KpnI GGTACC 2 cut(s) 443, 492
Ksp22I TGATCA 2 cut(s) 81, 520
Kzo9I GATC 5 cut(s) 81, 447, 520, 623, 628
LmnI GCTCC 1 cut(s) 602
Lsp1109I GCAGC 2 cut(s) 87, 120
LweI GCATC 2 cut(s) 249, 578
MaeIII GTNAC 4 cut(s) 124, 503, 526, 706
MalI GATC 5 cut(s) 83, 449, 522, 625, 630
MboI GATC 5 cut(s) 81, 447, 520, 623, 628
MboII GAAGA 6 cut(s) 58, 251, 274, 281, 319, 714
MfeI CAATTG 1 cut(s) 147
MlsI TGGCCA 1 cut(s) 343
MluCI AATT 4 cut(s) 49, 147, 321, 604
MluNI TGGCCA 1 cut(s) 343
MlyI GAGTC 1 cut(s) 511
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 1 cut(s) 587
Mox20I TGGCCA 1 cut(s) 343
Mph1103I ATGCAT 1 cut(s) 178
MscI TGGCCA 1 cut(s) 343
MseI TTAA 1 cut(s) 672
Msp20I TGGCCA 1 cut(s) 343
MspR9I CCNGG 1 cut(s) 376
MunI CAATTG 1 cut(s) 147
Mva1269I GAATGC 1 cut(s) 693
MvaI CCWGG 1 cut(s) 376
MwoI GCNNNNNNNGC 2 cut(s) 216, 353
NcoI CCATGG 1 cut(s) 161
NdeII GATC 5 cut(s) 81, 447, 520, 623, 628
NlaIII CATG 5 cut(s) 165, 180, 268, 394, 527
NlaIV GGNNCC 3 cut(s) 441, 490, 598
NmuCI GTSAC 1 cut(s) 503
NsiI ATGCAT 1 cut(s) 178
NspI RCATGY 1 cut(s) 180
PctI GAATGC 1 cut(s) 693
PfeI GAWTC 2 cut(s) 248, 427
PkrI GCNGC 2 cut(s) 102, 135
PleI GAGTC 1 cut(s) 510
PpsI GAGTC 1 cut(s) 510
Psp6I CCWGG 1 cut(s) 374
PspFI CCCAGC 1 cut(s) 565
PspGI CCWGG 1 cut(s) 374
PspN4I GGNNCC 3 cut(s) 441, 490, 598
RsaI GTAC 4 cut(s) 269, 362, 441, 490
RsaNI GTAC 4 cut(s) 268, 361, 440, 489
SaqAI TTAA 1 cut(s) 672
SatI GCNGC 2 cut(s) 101, 134
Sau3AI GATC 5 cut(s) 81, 447, 520, 623, 628
SchI GAGTC 1 cut(s) 511
ScrFI CCNGG 1 cut(s) 376
SetI ASST 4 cut(s) 46, 135, 187, 380
SfaNI GCATC 2 cut(s) 249, 578
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 4 cut(s) 49, 147, 321, 604
SsiI CCGC 1 cut(s) 443
SspI AATATT 1 cut(s) 435
StyD4I CCNGG 1 cut(s) 374
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 11
TasI AATT 4 cut(s) 49, 147, 321, 604
TatI WGTACW 2 cut(s) 267, 360
TfiI GAWTC 2 cut(s) 248, 427
Tru1I TTAA 1 cut(s) 672
Tru9I TTAA 1 cut(s) 672
TscAI CASTG 3 cut(s) 315, 504, 512
TseFI GTSAC 1 cut(s) 503
TseI GCWGC 2 cut(s) 100, 133
Tsp45I GTSAC 1 cut(s) 503
TspDTI ATGAA 6 cut(s) 350, 379, 389, 534, 624, 686
TspRI CASTG 3 cut(s) 315, 504, 512
XapI RAATTY 1 cut(s) 49
XceI RCATGY 1 cut(s) 180
XmiI GTMKAC 1 cut(s) 6
Zsp2I ATGCAT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.