Prupe.1G451700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010531
Physical Location & Seq
Forward (+)
38025910 .. 38028245
2336 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G451700.2

Sequence Viewer

Length: 708 bp
ATGGTAGGCTGCGCTAGGTGTTGCGTGCACACTTCAATGAGAGCAGTGAACTTATTTGTCAATCTTTGTGGTGTTGGAGTGATTATCTACTCTCTTTGGCTCATCAAGAAATGGCAGGTTGGAGTTTCTGAGCTGCCTTCTGTTTCATATATACCTAAGCCATGGTTTATATATACATGTTTAGGTGTGGGAATGGCTGTCTGCTTAAGCACACTTTGCGGTCATATCGTTGCTCACCGTAGCAGCAGTTCTGTTCTCTTCATAGTATCCTTTCTGTTTCAGTACATTATCTCCATCTTCTCCCTTCTCTGCCTTGAAGTTTCCGTGATTGTCGCAATTTTCTATAAGATGAATTGGGAAATGCAACTTGCAAAGTTCATTGATAAGAACCACATCAAGTTCAAGGACTTCTTGATATTTCATGTCAACATGTGCCGCCTGATTGTAATTCTCATTTTGGTGCCACAGATCAAAGTTATTGTTCTAGCAGCTATTCTCTGGGTTATTGGGGCTGAGCCAAGAGCACATTGCAACGATTCCGAAATACCCAACTTCAGATATTCTTTTCTGGCAGCACCTACCCAATCTGTACTTGATGTATCAAGACACGGTTTCAGAAATTATGAAGCTTCCCCAAGAGAGAGCTTTTTGTCATATGTTAACAGATTTTTCAGAATGCAATTTCATAGAAGAGTCAGTCTTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

236

Amino Acids

26.91

Weight (kDa)

9.35

Isoelectric Point (pI)

31.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 106
AccB1I GGYRCC 1 cut(s) 460
AciI CCGC 2 cut(s) 219, 436
AcuI CTGAAG 1 cut(s) 538
AfaI GTAC 2 cut(s) 284, 591
AflII CTTAAG 1 cut(s) 205
AflIII ACRYGT 2 cut(s) 176, 429
AgsI TTSAA 3 cut(s) 36, 317, 403
AluBI AGCT 4 cut(s) 133, 491, 629, 645
AluI AGCT 4 cut(s) 133, 491, 629, 645
Alw21I GWGCWC 2 cut(s) 30, 526
Alw44I GTGCAC 1 cut(s) 26
ApaLI GTGCAC 1 cut(s) 26
ApeKI GCWGC 5 cut(s) 9, 133, 243, 488, 572
AspLEI GCGC 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 227
BaeGI GKGCMC 1 cut(s) 30
BanI GGYRCC 1 cut(s) 460
Bbv12I GWGCWC 2 cut(s) 30, 526
BbvI GCAGC 4 cut(s) 120, 255, 500, 584
BccI CCATC 1 cut(s) 302
BciVI GTATCC 1 cut(s) 277
BfaI CTAG 2 cut(s) 15, 485
BfrI CTTAAG 1 cut(s) 205
BfuAI ACCTGC 1 cut(s) 106
BfuI GTATCC 1 cut(s) 277
BisI GCNGC 6 cut(s) 10, 134, 244, 436, 489, 573
BlpI GCTNAGC 1 cut(s) 513
BlsI GCNGC 6 cut(s) 11, 135, 245, 437, 490, 574
BmiI GGNNCC 1 cut(s) 462
Bpu10I CCTNAGC 1 cut(s) 156
Bpu1102I GCTNAGC 1 cut(s) 513
BsaJI CCNNGG 1 cut(s) 161
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bse3DI GCAATG 1 cut(s) 526
BseDI CCNNGG 1 cut(s) 161
BseMI GCAATG 1 cut(s) 526
BseMII CTCAG 2 cut(s) 120, 504
BseSI GKGCMC 1 cut(s) 30
BseXI GCAGC 4 cut(s) 120, 255, 500, 584
BshNI GGYRCC 1 cut(s) 460
BsiHKAI GWGCWC 2 cut(s) 30, 526
BsmI GAATGC 1 cut(s) 681
Bsp1286I GDGCHC 2 cut(s) 30, 526
Bsp143I GATC 1 cut(s) 468
Bsp1720I GCTNAGC 1 cut(s) 513
Bsp19I CCATGG 1 cut(s) 161
BspACI CCGC 2 cut(s) 219, 436
BspCNI CTCAG 2 cut(s) 121, 505
BspLI GGNNCC 1 cut(s) 462
BspMI ACCTGC 1 cut(s) 106
BspT107I GGYRCC 1 cut(s) 460
BspTI CTTAAG 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 526
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 1 cut(s) 468
BssT1I CCWWGG 1 cut(s) 161
Bst4CI ACNGT 2 cut(s) 239, 611
Bst6I CTCTTC 2 cut(s) 263, 685
BstAFI CTTAAG 1 cut(s) 205
BstAPI GCANNNNNTGC 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 4 cut(s) 129, 156, 513, 701
BstDSI CCRYGG 1 cut(s) 161
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 1 cut(s) 471
BstMBI GATC 1 cut(s) 468
BstMWI GCNNNNNNNGC 1 cut(s) 216
BstNSI RCATGY 2 cut(s) 180, 433
BstSLI GKGCMC 1 cut(s) 30
BstV1I GCAGC 4 cut(s) 120, 255, 500, 584
BsuI GTATCC 1 cut(s) 277
BtgI CCRYGG 1 cut(s) 161
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 51
BveI ACCTGC 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 26
CfoI GCGC 1 cut(s) 14
Csp6I GTAC 2 cut(s) 283, 590
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviAII CATG 4 cut(s) 162, 177, 422, 430
CviQI GTAC 2 cut(s) 283, 590
DdeI CTNAG 4 cut(s) 129, 156, 513, 701
DpnI GATC 1 cut(s) 470
DpnII GATC 1 cut(s) 468
Eam1104I CTCTTC 2 cut(s) 263, 685
EarI CTCTTC 2 cut(s) 263, 685
Eco130I CCWWGG 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 538
EcoT14I CCWWGG 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 4 cut(s) 165, 180, 425, 433
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FatI CATG 4 cut(s) 161, 176, 421, 429
FauNDI CATATG 1 cut(s) 655
Fnu4HI GCNGC 6 cut(s) 10, 134, 244, 436, 489, 573
Fsp4HI GCNGC 6 cut(s) 10, 134, 244, 436, 489, 573
FspBI CTAG 2 cut(s) 15, 485
GlaI GCGC 1 cut(s) 13
GluI GCNGC 6 cut(s) 10, 134, 244, 436, 489, 573
HhaI GCGC 1 cut(s) 14
Hin1II CATG 4 cut(s) 165, 180, 425, 433
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HincII GTYRAC 2 cut(s) 427, 661
HindII GTYRAC 2 cut(s) 427, 661
HindIII AAGCTT 1 cut(s) 627
HinfI GANTC 2 cut(s) 536, 693
HpaI GTTAAC 1 cut(s) 661
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 4 cut(s) 28, 49, 427, 661
Hpy188I TCNGA 5 cut(s) 130, 541, 557, 617, 674
Hpy188III TCNNGA 3 cut(s) 106, 412, 603
Hpy8I GTNNAC 4 cut(s) 28, 49, 427, 661
HpyAV CCTTC 2 cut(s) 147, 314
HpyCH4III ACNGT 2 cut(s) 239, 611
HpyCH4V TGCA 5 cut(s) 28, 364, 371, 531, 679
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
HpyF3I CTNAG 4 cut(s) 129, 156, 513, 701
Hsp92II CATG 4 cut(s) 165, 180, 425, 433
HspAI GCGC 1 cut(s) 12
KspAI GTTAAC 1 cut(s) 661
Kzo9I GATC 1 cut(s) 468
LpnPI CCDG 4 cut(s) 101, 452, 484, 554
Lsp1109I GCAGC 4 cut(s) 120, 255, 500, 584
MaeI CTAG 2 cut(s) 15, 485
MalI GATC 1 cut(s) 470
MboI GATC 1 cut(s) 468
MboII GAAGA 3 cut(s) 250, 289, 702
MhlI GDGCHC 2 cut(s) 30, 526
MluCI AATT 5 cut(s) 336, 352, 447, 619, 680
MlyI GAGTC 1 cut(s) 702
MmeI TCCRAC 2 cut(s) 55, 100
MseI TTAA 2 cut(s) 206, 660
MslI CAYNNNNRTG 2 cut(s) 35, 458
MspCI CTTAAG 1 cut(s) 205
Mva1269I GAATGC 1 cut(s) 681
MwoI GCNNNNNNNGC 1 cut(s) 216
NcoI CCATGG 1 cut(s) 161
NdeI CATATG 1 cut(s) 655
NdeII GATC 1 cut(s) 468
NlaIII CATG 4 cut(s) 165, 180, 425, 433
NlaIV GGNNCC 1 cut(s) 462
NspI RCATGY 2 cut(s) 180, 433
PciI ACATGT 2 cut(s) 176, 429
PctI GAATGC 1 cut(s) 681
PfeI GAWTC 1 cut(s) 536
PkrI GCNGC 6 cut(s) 11, 135, 245, 437, 490, 574
PleI GAGTC 1 cut(s) 701
PpsI GAGTC 1 cut(s) 701
PscI ACATGT 2 cut(s) 176, 429
PspN4I GGNNCC 1 cut(s) 462
PsrI GAACNNNNNNTAC 2 cut(s) 232, 264
RsaI GTAC 2 cut(s) 284, 591
RsaNI GTAC 2 cut(s) 283, 590
RseI CAYNNNNRTG 2 cut(s) 35, 458
SaqAI TTAA 2 cut(s) 206, 660
SatI GCNGC 6 cut(s) 10, 134, 244, 436, 489, 573
Sau3AI GATC 1 cut(s) 468
SchI GAGTC 1 cut(s) 702
SduI GDGCHC 2 cut(s) 30, 526
SetI ASST 9 cut(s) 20, 120, 135, 157, 187, 493, 580, 631, 647
SmiMI CAYNNNNRTG 2 cut(s) 35, 458
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
Sse9I AATT 5 cut(s) 336, 352, 447, 619, 680
SsiI CCGC 2 cut(s) 219, 436
SspMI CTAG 2 cut(s) 15, 485
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 2 cut(s) 239, 611
TasI AATT 5 cut(s) 336, 352, 447, 619, 680
TatI WGTACW 2 cut(s) 282, 589
TauI GCSGC 1 cut(s) 438
TfiI GAWTC 1 cut(s) 536
Tru1I TTAA 2 cut(s) 206, 660
Tru9I TTAA 2 cut(s) 206, 660
TscAI CASTG 1 cut(s) 51
TseI GCWGC 5 cut(s) 9, 133, 243, 488, 572
TspDTI ATGAA 7 cut(s) 135, 250, 365, 367, 410, 639, 674
TspGWI ACGGA 1 cut(s) 313
TspRI CASTG 1 cut(s) 51
Vha464I CTTAAG 1 cut(s) 205
VneI GTGCAC 1 cut(s) 26
XceI RCATGY 2 cut(s) 180, 433
XspI CTAG 2 cut(s) 15, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.