Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010531

Physical Location & Seq

Genomic Coordinates Forward (+)

4862562 .. 4866048

Gene Structure 3487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00162270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGTATACTGCGCAAGATGTTGCTTGCACAACTCAATGAGAGCTTTGAATTTCTTAGTCAATATCTTCGGTGTCGGAGTGATCATCTACACTCTCTGGCTGCTCAAGAAGTGGCAGGATGGAGTTACTGAGCTGCCTCCTGTCCCAATTGTTCCTAAACCATGGTATATTATTCAACTCAGTATACCTCACAGAATTCATTGCTTCATGCTTTGTTTACTCTCCTCGATCTTCATGAAAAGAAGAGGTGTGGGAATGGCTGTCTGTTTAAGCACACTTTGCAGTTATCTTGTTGCTCATTGCATCACCGATTCTACTCTTCTTCTCATATACATAGTCTTTGTCTTCTCTCTTCTTTGCCTTGAAGTTGCAGTGGTTGTTGCAATTTTCTTCGAGATGAACTGGGCAGCGAAACTTGCAGAGTACATAGATGACACCGAGTTCAAGAAGTTCATGTTATTTCATCTTTACTTGTGTCGTGTCATTGCGATTCTAATTTTGGTACCGCAGATCAAATGTGTAGTTTTAGCAATCATTCTTTGGGCTATTGGTACCGAGCCACTGAGTCACTGCGACTATTCTGATCATGTAACTGACTTTAGATATTCATTTCTGACGATACCGAGCCCAACATCTTTCCTCAACATGTCGAGTCGTGGCTCCAGAAATTATGAAGCCTTGCCAAGATCAGATCAATGTGAACATCCGCCACGGCAGAGCTTTTTCTCACATATTAACAGATTTTTCAGAATGCAGTTTCATGGAAGAGTCACACTTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

260

Amino Acids

30.02

Weight (kDa)

8.68

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010531)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g36010
malus_domestica	MD06G1168200.v1.1 MD08G1117200.v1.1 MD15G1096800.v1.1
prunus_persica	Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1 Prupe.1G451700_v2.0.a1
pyrus_communis	pycom08g09780
rosa_chinensis	RchiOBHm_Chr6g0305861
rosa_laevigata	RLG00000010852
rosa_multiflora	Rmu_sc0001809.1_g000043
rosa_roxburghii	Rroxscaffold_7G00162270
rosa_rugosa	Rorug06G0344400
rosa_samantha	Rh6AG456200 Rh6BG445000 Rh6CG470200 Rh6DG456900
rosa_wichuraiana	Rw6G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	13
Acc65I	GGTACC	2 cut(s)	502, 551
AccB1I	GGYRCC	2 cut(s)	502, 551
AccI	GTMKAC	2 cut(s)	6, 184
AciI	CCGC	2 cut(s)	506, 707
AcsI	RAATTY	2 cut(s)	49, 195
AfaI	GTAC	3 cut(s)	425, 504, 553
AflIII	ACRYGT	1 cut(s)	645
AgsI	TTSAA	4 cut(s)	49, 176, 365, 445
AluBI	AGCT	3 cut(s)	44, 133, 720
AluI	AGCT	3 cut(s)	44, 133, 720
ApeKI	GCWGC	3 cut(s)	100, 133, 407
ApoI	RAATTY	2 cut(s)	49, 195
Asp718I	GGTACC	2 cut(s)	502, 551
AspLEI	GCGC	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	298
BanI	GGYRCC	2 cut(s)	502, 551
BanII	GRGCYC	1 cut(s)	629
BbsI	GAAGAC	1 cut(s)	337
BbvI	GCAGC	3 cut(s)	87, 120, 419
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	1 cut(s)	728
BclI	TGATCA	2 cut(s)	81, 583
BisI	GCNGC	3 cut(s)	101, 134, 408
BlsI	GCNGC	3 cut(s)	102, 135, 409
BmiI	GGNNCC	3 cut(s)	504, 553, 661
BmrI	ACTGGG	1 cut(s)	412
BmsI	GCATC	1 cut(s)	312
BmuI	ACTGGG	1 cut(s)	412
BpiI	GAAGAC	1 cut(s)	337
BpmI	CTGGAG	1 cut(s)	646
BpuEI	CTTGAG	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	161, 710
Bse1I	ACTGG	1 cut(s)	407
Bse3DI	GCAATG	3 cut(s)	199, 298, 483
BseDI	CCNNGG	2 cut(s)	161, 710
BseGI	GGATG	2 cut(s)	124, 703
BseMI	GCAATG	3 cut(s)	199, 298, 483
BseMII	CTCAG	3 cut(s)	120, 193, 554
BseNI	ACTGG	1 cut(s)	407
BseRI	GAGGAG	1 cut(s)	214
BseXI	GCAGC	3 cut(s)	87, 120, 419
BshNI	GGYRCC	2 cut(s)	502, 551
BslFI	GGGAC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	756
Bsp1286I	GDGCHC	1 cut(s)	629
Bsp143I	GATC	6 cut(s)	81, 228, 510, 583, 686, 691
Bsp19I	CCATGG	1 cut(s)	161
BspACI	CCGC	2 cut(s)	506, 707
BspCNI	CTCAG	3 cut(s)	121, 192, 555
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	3 cut(s)	504, 553, 661
BspT107I	GGYRCC	2 cut(s)	502, 551
BsrDI	GCAATG	3 cut(s)	199, 298, 483
BsrI	ACTGG	1 cut(s)	407
BssECI	CCNNGG	2 cut(s)	161, 710
BssMI	GATC	6 cut(s)	81, 228, 510, 583, 686, 691
BssNAI	GTATAC	2 cut(s)	7, 185
BssT1I	CCWWGG	1 cut(s)	161
Bst1107I	GTATAC	2 cut(s)	7, 185
Bst6I	CTCTTC	4 cut(s)	238, 324, 357, 760
BstAPI	GCANNNNNTGC	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	5 cut(s)	55, 129, 179, 563, 776
BstDSI	CCRYGG	2 cut(s)	161, 710
BstF5I	GGATG	2 cut(s)	124, 703
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	6 cut(s)	84, 231, 513, 586, 689, 694
BstMBI	GATC	6 cut(s)	81, 228, 510, 583, 686, 691
BstMWI	GCNNNNNNNGC	2 cut(s)	279, 416
BstNSI	RCATGY	1 cut(s)	649
BstV1I	GCAGC	3 cut(s)	87, 120, 419
BstV2I	GAAGAC	1 cut(s)	337
BstZ17I	GTATAC	2 cut(s)	7, 185
BtgI	CCRYGG	2 cut(s)	161, 710
BtsCI	GGATG	2 cut(s)	124, 703
BtsI	GCAGTG	2 cut(s)	378, 568
BtsIMutI	CAGTG	3 cut(s)	378, 560, 568
Cac8I	GCNNGC	1 cut(s)	26
CciI	TCATGA	1 cut(s)	234
CfoI	GCGC	1 cut(s)	14
Csp6I	GTAC	3 cut(s)	424, 503, 552
CviAII	CATG	7 cut(s)	162, 208, 235, 454, 587, 646, 761
CviQI	GTAC	3 cut(s)	424, 503, 552
DdeI	CTNAG	5 cut(s)	55, 129, 179, 563, 776
DpnI	GATC	6 cut(s)	83, 230, 512, 585, 688, 693
DpnII	GATC	6 cut(s)	81, 228, 510, 583, 686, 691
Eam1104I	CTCTTC	4 cut(s)	238, 324, 357, 760
EarI	CTCTTC	4 cut(s)	238, 324, 357, 760
EciI	GGCGGA	1 cut(s)	696
Eco130I	CCWWGG	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	629
EcoRI	GAATTC	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	629
ErhI	CCWWGG	1 cut(s)	161
FaeI	CATG	7 cut(s)	165, 211, 238, 457, 590, 649, 764
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	7 cut(s)	161, 207, 234, 453, 586, 645, 760
FbaI	TGATCA	2 cut(s)	81, 583
FblI	GTMKAC	2 cut(s)	6, 184
Fnu4HI	GCNGC	3 cut(s)	101, 134, 408
FokI	GGATG	2 cut(s)	131, 690
FriOI	GRGCYC	1 cut(s)	629
Fsp4HI	GCNGC	3 cut(s)	101, 134, 408
FspI	TGCGCA	1 cut(s)	13
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	3 cut(s)	101, 134, 408
GsuI	CTGGAG	1 cut(s)	646
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	7 cut(s)	165, 211, 238, 457, 590, 649, 764
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HinfI	GANTC	5 cut(s)	311, 490, 565, 652, 768
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	4 cut(s)	7, 185, 218, 701
Hpy188I	TCNGA	5 cut(s)	77, 583, 615, 691, 749
Hpy188III	TCNNGA	5 cut(s)	106, 235, 394, 445, 663
Hpy8I	GTNNAC	4 cut(s)	7, 185, 218, 701
HpyCH4V	TGCA	7 cut(s)	28, 282, 303, 371, 383, 419, 754
HpyF10VI	GCNNNNNNNGC	2 cut(s)	279, 416
HpyF3I	CTNAG	5 cut(s)	55, 129, 179, 563, 776
Hsp92II	CATG	7 cut(s)	165, 211, 238, 457, 590, 649, 764
HspAI	GCGC	1 cut(s)	12
KpnI	GGTACC	2 cut(s)	506, 555
Ksp22I	TGATCA	2 cut(s)	81, 583
Kzo9I	GATC	6 cut(s)	81, 228, 510, 583, 686, 691
LmnI	GCTCC	1 cut(s)	665
LpnPI	CCDG	5 cut(s)	82, 101, 153, 388, 676
Lsp1109I	GCAGC	3 cut(s)	87, 120, 419
LweI	GCATC	1 cut(s)	312
MaeIII	GTNAC	4 cut(s)	124, 566, 589, 769
MalI	GATC	6 cut(s)	83, 230, 512, 585, 688, 693
MboI	GATC	6 cut(s)	81, 228, 510, 583, 686, 691
MboII	GAAGA	9 cut(s)	58, 223, 255, 311, 314, 337, 344, 382, 777
MfeI	CAATTG	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	629
MluCI	AATT	6 cut(s)	49, 147, 195, 384, 495, 667
MlyI	GAGTC	3 cut(s)	574, 661, 777
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	5 cut(s)	147, 198, 235, 239, 650
MseI	TTAA	2 cut(s)	269, 735
MunI	CAATTG	1 cut(s)	147
Mva1269I	GAATGC	1 cut(s)	756
MwoI	GCNNNNNNNGC	2 cut(s)	279, 416
NcoI	CCATGG	1 cut(s)	161
NdeII	GATC	6 cut(s)	81, 228, 510, 583, 686, 691
NlaIII	CATG	7 cut(s)	165, 211, 238, 457, 590, 649, 764
NlaIV	GGNNCC	3 cut(s)	504, 553, 661
NmuCI	GTSAC	2 cut(s)	566, 769
NsbI	TGCGCA	1 cut(s)	13
NspI	RCATGY	1 cut(s)	649
PagI	TCATGA	1 cut(s)	234
PciI	ACATGT	1 cut(s)	645
PctI	GAATGC	1 cut(s)	756
PfeI	GAWTC	2 cut(s)	311, 490
PkrI	GCNGC	3 cut(s)	102, 135, 409
PleI	GAGTC	3 cut(s)	573, 660, 776
PpsI	GAGTC	3 cut(s)	573, 660, 776
PscI	ACATGT	1 cut(s)	645
PspN4I	GGNNCC	3 cut(s)	504, 553, 661
RsaI	GTAC	3 cut(s)	425, 504, 553
RsaNI	GTAC	3 cut(s)	424, 503, 552
SaqAI	TTAA	2 cut(s)	269, 735
SatI	GCNGC	3 cut(s)	101, 134, 408
Sau3AI	GATC	6 cut(s)	81, 228, 510, 583, 686, 691
SchI	GAGTC	3 cut(s)	574, 661, 777
SduI	GDGCHC	1 cut(s)	629
SetI	ASST	5 cut(s)	46, 135, 190, 250, 722
SfaNI	GCATC	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	6 cut(s)	49, 147, 195, 384, 495, 667
SsiI	CCGC	2 cut(s)	506, 707
StyI	CCWWGG	1 cut(s)	161
TaqI	TCGA	3 cut(s)	227, 393, 650
TasI	AATT	6 cut(s)	49, 147, 195, 384, 495, 667
TatI	WGTACW	1 cut(s)	423
TfiI	GAWTC	2 cut(s)	311, 490
Tru1I	TTAA	2 cut(s)	269, 735
Tru9I	TTAA	2 cut(s)	269, 735
TscAI	CASTG	3 cut(s)	378, 567, 575
TseFI	GTSAC	2 cut(s)	566, 769
TseI	GCWGC	3 cut(s)	100, 133, 407
Tsp45I	GTSAC	2 cut(s)	566, 769
TspRI	CASTG	3 cut(s)	378, 567, 575
XapI	RAATTY	2 cut(s)	49, 195
XceI	RCATGY	1 cut(s)	649
XmiI	GTMKAC	2 cut(s)	6, 184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.