MD15G1193900.v1.1

Plant family of unknown function (DUF810)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011157
Physical Location & Seq
Forward (+)
15335727 .. 15339954
4228 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1193900.v1.1.491

Sequence Viewer

Length: 2931 bp
ATGGCTCACATTCTCAGAGACAGAGTATTCGGAAGCTCCAGACGACACTCCCAAAACGCCAATCCAATTCCTATTCCAATCCAACCCGCCATGCCCGTTCACACAGTTGAAGGCCTCCCCAACCCTTTTGGGGAACTGGGTCCGACCCTCTCGGATTCGGAGCTCCGGGAAACCGTCTACCAGATCTTAGTCGGAGCCTGCCGGAGCTCCGGGCCCAAACCGCTCACCTACGTCCCACAGTCCGAGAAGAGCGACCGGAGCGCTCTGACTTCGCTGCCGTCGTCGCTTCAGAGGTCGACGTCGTCGGCGGCGAGCCGGTTCAAGAAGGCGCTGGGTATGAAGTCGGCTTCTGGGAGGAGACTCGGTGGCGGTGACTCAGTGAGTCAGGGGAAGAGTAAGTGGACCGGGACGGTTTGGGAGCTCGTGAGAGTTCAGATGAAGATTTCGGAGCAGACTGATACGAGGGTCCGGAGAGCACTTTTGAGGGTTGCTGCTGGTCAGCTTGGACGGCGAATAGAATGCATGGTATTGCCCCTTGAGCTATTACAGCAGTTCAAGTCTTCGGATTTTCCTACCCAACAAGAATATGAAGCTTGGCAGAGGAGAAACTTGAGGGTTCTCGAAGCCGGACTTCTTTTGTATCCTTATTTGCCTTTAGATAAGAGAGACACTGCTCCTCAACAACTCCGGAAGATTATTCACGGGGCCTTAGATAAACCCATAGAAACTGGAAAGCACACTGAGTCGATGCAACTTCTTTACAATGTTGTTATGTCTCTTGCTAACAGATCAGTTGACGGTTCTGTTTCCGAGACGTGCCACTGGGCTGATGGGTTTCCGTTGAACCTTAGGCTCTACCAAATGCTACTAGAATCGTGTTTTGACCCGAATGAAGAAACATCTGTTGTTGAAGAGCTTGAAGAGGTTTTTGACCTCATAAAGAAGACCTGGGTAGTCCTCGGAATAAACCAAATGCTGCATAATCTTTGTTTCTCGTGGGTTTTATTTCATCGTTATGTTACAACTGGCCAAGTAGATAACGACCTGCTGCTTGCGTCCAGTAACCTGTTGGCGGAAGTTGAGCAAGATGCCTATGGAACAAAAGATCCATCTTACTTGAAGATCTTAAGTTCAACATTGAGTTCGATATTGGGTTGGGCTGAGAAAAGGCTTCTTGCTTACCGAGATAATTTCCACAGTGGCAATATAGAAGCAATGGAAAACATTCTCTCTCTGGGATTATTATCAGCAAAAATACTGGTTCAAGATAGTTCTCATGAATACCGTAGGAAGAGGAAAGAAACTAATGTGGGTTATGACAGGGTTGATGCTTACATAAGATCATCAATACGCTCCGCTTTTACGCAGGCAAGTTCTAGCAAGCGTTACTCGAAAAGCCAAAACAATCTTCCTGTCCTTACCGCCCTTGCTCAAGATGTTAGCGAACTGGCTTTTAGTGAGAAGGAGATATTTGGTCCAGTATTGAAGAGATGGCACCCTCTTGTAACAGGCATTGCTATGGCTACACTGCATTCTTGCTATGGAAATGAGCTAAAGCAATTTGTGGCGGGTATCAGTGATTTGACGCCGGACACTATACAAGTGCTTAGAGCTGCTGACAAATTGGAAAAAGATCTTGTGCAGATTGCCGTCGAAGATTTAGTGGATAGTGAGGATGGTGGAATGTCGATCATAAGGGAGATGCCTCCTTACGAGGCTGAAGCTGTAATTGCCAATCTGGCAAAGGCTTGGATAAGGACAAGAGTAGACAGGCTGAGGGAATGGGTTGATAGAAATCTGCATCAAGAGGTATGGAATCCAAAGGCAAACAAAGAGCGGTTTGCTCCTTCTGCTGTTGAAGTTTTACGCATTATAGATGATACGTTGGAAACATTCTTTATGTTGCCGATACCCATGCATTCTGTATTGGTTCCAGAACTGATGATCGGTCTAGACAAATGTATTCAACATTATATCTTGAAGGCCAAATCTGGTTGCGGGACCCGAAACACTTTCATTCCCACTTTACCTGCTTTGACCAGATGCTCAGCAAGGTCAAAATATGGTGTGTTCAAGAAAAAGGAAAGGCTGCATATAAGTCAGAGAAGGAAATCTCAGGTTGGAAGTACAAATGGGGACAGCTCATTTGGGATTCCGCAACTTTGCGTTCGCATTAATACTTTGCAGCTTATTCGAATGGAATTGGGAGTTTTCGAGAAGAGGATAATTTCCCATCTTGGGAGCTCTGAAACCCCTTGGGAGGACAATATCGCCAACGGAGTGGGCAAAATGTTTGAGCTTTCCACATCTGCTTGTGTTGAAGGGATCCAACAACTTTGTGAGGCAACAGCATACAAGGTCGTTTTCCATGACCTAAGTCATGTCCTTTGGGACGGCTTGTATATTGTGGGAGTTTCGTCGTCTAGGATTGAGCCATTTCTTCAGGAGCTTGAGCAATACTTGGAGATTATTTCGTCAACTGTGCATGACAGAGTTAGAACACGGATCATTACTGATGTAATGAGAGCTTCTTTTGACGGGTTCTTGTTGGTTTTGCTGGCTGGAGGACCTTCTCGCACTTTCATGCGGAAAGATTCTGACCTAATCGAGGAGGATTTTAGGTTTCTAACTGATTTATTCTGGTCGAACGGGGATGGACTGCCGGCTGATTTGATTGATAAGTTATCTACCACTGTTAAAGGTATCCTCCCTCTGTACGGTATTGATACTGACAGCCTTGTTGAACAGCTCAAACGTGCAACTCTGGAGAACTATGGATCTTCTGCTAAATCTCGGCTTCCAATGCCTCCAACTACGGGCGAGTGGAACTCCAACGAACCAAACACACTTCTACGCGTCTTGTGTTATCGGAATGACGAGACTGCAGCAAAGTTCCTTAAGAAGACTTATAACTTGCCTAAGAAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF810

Protein Analysis

977

Amino Acids

109.77

Weight (kDa)

8.07

Isoelectric Point (pI)

48.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_PATROL1 PF25761 577 - 975 4e-170 PATROL1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20010 AT2G20010
fragaria_vesca FvH4_1g05840
malus_domestica MD02G1060400.v1.1 MD15G1193900.v1.1
prunus_persica Prupe.7G222400_v2.0.a1 Prupe.7G222400_v2.0.a1
pyrus_communis pycom02g04960 pycom15g17370
rosa_chinensis RchiOBHm_Chr2g0091501 RchiOBHm_Chr2g0091591
rosa_laevigata RLG00000016231
rosa_multiflora Rmu_sc0002407.1_g000007
rosa_roxburghii Rroxscaffold_2G00149980
rosa_rugosa Rorug02G0018300
rosa_samantha Rh2AG063500 Rh2BG062900 Rh2CG064600 Rh2DG063000
rosa_wichuraiana Rw2G005690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2910
AatII GACGTC 1 cut(s) 302
Acc36I ACCTGC 2 cut(s) 1053, 2038
AccB1I GGYRCC 1 cut(s) 1494
AccBSI CCGCTC 2 cut(s) 223, 1837
AccI GTMKAC 3 cut(s) 177, 296, 1767
AccII CGCG 1 cut(s) 2856
AccIII TCCGGA 2 cut(s) 468, 687
AclWI GGATC 5 cut(s) 1100, 2320, 2333, 2513, 2785
AcoI YGGCCR 1 cut(s) 1027
AcuI CTGAAG 3 cut(s) 272, 1740, 2426
AcyI GRCGYC 2 cut(s) 299, 1586
AfaI GTAC 2 cut(s) 2128, 2717
AfeI AGCGCT 1 cut(s) 262
AfiI CCNNNNNNNGG 7 cut(s) 130, 1072, 2238, 2260, 2608, 2717, 2816
AflII CTTAAG 2 cut(s) 1126, 2897
AflIII ACRYGT 1 cut(s) 2854
AjiI CACGTC 1 cut(s) 816
AjnI CCWGG 1 cut(s) 947
AjuI GAANNNNNNNTTGG 2 cut(s) 1392, 1424
AloI GAACNNNNNNTCC 2 cut(s) 1090, 1122
Alw21I GWGCWC 5 cut(s) 165, 209, 423, 478, 2246
Alw26I GTCTC 6 cut(s) 12, 352, 660, 780, 806, 2873
AlwI GGATC 5 cut(s) 1100, 2320, 2333, 2513, 2785
Aor13HI TCCGGA 2 cut(s) 468, 687
Aor51HI AGCGCT 1 cut(s) 262
AoxI GGCC 5 cut(s) 112, 212, 705, 1027, 1983
ApaI GGGCCC 1 cut(s) 216
ApeKI GCWGC 8 cut(s) 274, 491, 976, 1048, 1613, 2089, 2185, 2885
ArsI GACNNNNNNTTYG 4 cut(s) 11, 43, 2129, 2161
AseI ATTAAT 1 cut(s) 2175
Asp700I GAANNNNTTC 1 cut(s) 1224
AspLEI GCGC 2 cut(s) 263, 331
AspS9I GGNCC 9 cut(s) 140, 212, 213, 402, 466, 705, 1475, 2001, 2567
AsuC2I CCSGG 3 cut(s) 167, 211, 406
AsuHPI GGTGA 2 cut(s) 217, 383
AsuII TTCGAA 1 cut(s) 2194
AvaII GGWCC 6 cut(s) 140, 402, 466, 1475, 2001, 2567
AxyI CCTNAGG 1 cut(s) 848
BaeGI GKGCMC 1 cut(s) 216
BaeI ACNNNNGTAYC 2 cut(s) 450, 483
BalI TGGCCA 1 cut(s) 1029
BamHI GGATCC 1 cut(s) 2325
BanI GGYRCC 1 cut(s) 1494
BanII GRGCYC 5 cut(s) 165, 209, 216, 423, 2246
BauI CACGAG 2 cut(s) 422, 994
BbsI GAAGAC 3 cut(s) 552, 950, 2909
Bbv12I GWGCWC 5 cut(s) 165, 209, 423, 478, 2246
BbvCI CCTCAGC 1 cut(s) 1775
BbvI GCAGC 8 cut(s) 261, 478, 963, 1035, 1600, 2076, 2197, 2897
BccI CCATC 6 cut(s) 824, 1117, 1485, 1670, 2241, 2648
BceAI ACGGC 4 cut(s) 262, 524, 1634, 2410
BcgI CGANNNNNNTGC 6 cut(s) 501, 535, 1897, 1931, 2174, 2208
BciT130I CCWGG 1 cut(s) 949
BciVI GTATCC 2 cut(s) 651, 2714
BcnI CCSGG 3 cut(s) 167, 211, 406
BcoDI GTCTC 6 cut(s) 12, 352, 660, 780, 806, 2873
BfaI CTAG 4 cut(s) 869, 1377, 1952, 2424
BfmI CTRYAG 1 cut(s) 2883
BfoI RGCGCY 2 cut(s) 264, 332
BfrI CTTAAG 2 cut(s) 1126, 2897
BfuAI ACCTGC 2 cut(s) 1053, 2038
BfuI GTATCC 2 cut(s) 651, 2714
BglI GCCNNNNNGGC 1 cut(s) 1739
BglII AGATCT 3 cut(s) 183, 1122, 1633
BisI GCNGC 9 cut(s) 275, 309, 492, 977, 1049, 1614, 2090, 2186, 2886
BlpI GCTNAGC 1 cut(s) 2047
BlsI GCNGC 9 cut(s) 276, 310, 493, 978, 1050, 1615, 2091, 2187, 2887
Bme1390I CCNGG 4 cut(s) 167, 211, 406, 949
Bme18I GGWCC 6 cut(s) 140, 402, 466, 1475, 2001, 2567
BmgBI CACGTC 1 cut(s) 816
BmgT120I GGNCC 9 cut(s) 140, 212, 213, 402, 466, 705, 1475, 2001, 2567
BmrFI CCNGG 4 cut(s) 167, 211, 406, 949
BmrI ACTGGG 2 cut(s) 146, 832
BmsI GCATC 6 cut(s) 738, 1078, 1318, 1692, 1810, 2033
BmuI ACTGGG 2 cut(s) 146, 832
BoxI GACNNNNGTC 1 cut(s) 2376
BpiI GAAGAC 3 cut(s) 552, 950, 2909
BplI GAGNNNNNCTC 2 cut(s) 2813, 2845
BpmI CTGGAG 3 cut(s) 22, 2583, 2786
Bpu10I CCTNAGC 1 cut(s) 1775
Bpu1102I GCTNAGC 1 cut(s) 2047
Bpu14I TTCGAA 1 cut(s) 2194
BpuEI CTTGAG 4 cut(s) 557, 631, 1416, 2471
BpuMI CCSGG 3 cut(s) 167, 211, 406
BsaBI GATNNNNATC 2 cut(s) 1243, 1794
BsaHI GRCGYC 2 cut(s) 299, 1586
BsaJI CCNNGG 3 cut(s) 948, 958, 2255
BsaWI WCCGGW 3 cut(s) 255, 468, 687
BsaXI ACNNNNNCTCC 2 cut(s) 349, 379
Bsc4I CCNNNNNNNGG 7 cut(s) 130, 1072, 2238, 2260, 2608, 2717, 2816
Bse118I RCCGGY 2 cut(s) 315, 2662
Bse1I ACTGG 8 cut(s) 141, 733, 827, 1030, 1059, 1263, 1452, 1478
Bse21I CCTNAGG 1 cut(s) 848
Bse3DI GCAATG 2 cut(s) 1221, 1512
Bse8I GATNNNNATC 2 cut(s) 1243, 1794
BseAI TCCGGA 2 cut(s) 468, 687
BseBI CCWGG 1 cut(s) 949
BseDI CCNNGG 3 cut(s) 948, 958, 2255
BseGI GGATG 2 cut(s) 1681, 2659
BseJI GATNNNNATC 2 cut(s) 1243, 1794
BseLI CCNNNNNNNGG 7 cut(s) 130, 1072, 2238, 2260, 2608, 2717, 2816
BseMI GCAATG 2 cut(s) 1221, 1512
BseMII CTCAG 7 cut(s) 28, 390, 732, 1152, 1766, 2061, 2129
BseNI ACTGG 8 cut(s) 141, 733, 827, 1030, 1059, 1263, 1452, 1478
BseRI GAGGAG 4 cut(s) 370, 616, 666, 2624
BseSI GKGCMC 1 cut(s) 216
BseXI GCAGC 8 cut(s) 261, 478, 963, 1035, 1600, 2076, 2197, 2897
BseYI CCCAGC 1 cut(s) 331
BsgI GTGCAG 1 cut(s) 1661
Bsh1236I CGCG 1 cut(s) 2856
Bsh1285I CGRYCG 1 cut(s) 256
BshFI GGCC 5 cut(s) 114, 214, 707, 1029, 1985
BshNI GGYRCC 1 cut(s) 1494
BsiEI CGRYCG 1 cut(s) 256
BsiHKAI GWGCWC 5 cut(s) 165, 209, 423, 478, 2246
BslFI GGGAC 5 cut(s) 218, 421, 2014, 2150, 2405
BslI CCNNNNNNNGG 7 cut(s) 130, 1072, 2238, 2260, 2608, 2717, 2816
BsmAI GTCTC 6 cut(s) 12, 352, 660, 780, 806, 2873
BsmBI CGTCTC 1 cut(s) 806
BsmFI GGGAC 5 cut(s) 218, 421, 2014, 2150, 2405
BsmI GAATGC 3 cut(s) 524, 1531, 1918
BsnI GGCC 5 cut(s) 114, 214, 707, 1029, 1985
Bsp119I TTCGAA 1 cut(s) 2194
Bsp120I GGGCCC 1 cut(s) 212
Bsp1286I GDGCHC 6 cut(s) 165, 209, 216, 423, 478, 2246
Bsp13I TCCGGA 2 cut(s) 468, 687
Bsp1720I GCTNAGC 1 cut(s) 2047
BspANI GGCC 5 cut(s) 114, 214, 707, 1029, 1985
BspCNI CTCAG 7 cut(s) 27, 389, 733, 1153, 1767, 2060, 2128
BspEI TCCGGA 2 cut(s) 468, 687
BspFNI CGCG 1 cut(s) 2856
BspHI TCATGA 1 cut(s) 1276
BspMAI CTGCAG 1 cut(s) 2887
BspMI ACCTGC 2 cut(s) 1053, 2038
BspPI GGATC 5 cut(s) 1100, 2320, 2333, 2513, 2785
BspQI GCTCTTC 2 cut(s) 242, 906
BspT104I TTCGAA 1 cut(s) 2194
BspT107I GGYRCC 1 cut(s) 1494
BspTI CTTAAG 2 cut(s) 1126, 2897
BsrBI CCGCTC 2 cut(s) 223, 1837
BsrDI GCAATG 2 cut(s) 1221, 1512
BsrFI RCCGGY 2 cut(s) 315, 2662
BsrI ACTGG 8 cut(s) 141, 733, 827, 1030, 1059, 1263, 1452, 1478
BssAI RCCGGY 2 cut(s) 315, 2662
BssECI CCNNGG 3 cut(s) 948, 958, 2255
BssNI GRCGYC 2 cut(s) 299, 1586
BssSI CACGAG 2 cut(s) 422, 994
BssT1I CCWWGG 1 cut(s) 2255
Bst2BI CACGAG 2 cut(s) 422, 994
Bst2UI CCWGG 1 cut(s) 949
Bst6I CTCTTC 7 cut(s) 242, 386, 906, 915, 1286, 1481, 2213
BstACI GRCGYC 2 cut(s) 299, 1586
BstAFI CTTAAG 2 cut(s) 1126, 2897
BstBI TTCGAA 1 cut(s) 2194
BstC8I GCNNGC 7 cut(s) 199, 313, 1053, 1368, 1382, 2559, 2664
BstENI CCTNNNNNAGG 1 cut(s) 2606
BstF5I GGATG 2 cut(s) 1681, 2659
BstFNI CGCG 1 cut(s) 2856
BstH2I RGCGCY 2 cut(s) 264, 332
BstHHI GCGC 2 cut(s) 263, 331
BstMAI GTCTC 6 cut(s) 12, 352, 660, 780, 806, 2873
BstMCI CGRYCG 1 cut(s) 256
BstNI CCWGG 1 cut(s) 949
BstPAI GACNNNNGTC 1 cut(s) 2376
BstSCI CCNGG 4 cut(s) 165, 209, 404, 947
BstSFI CTRYAG 1 cut(s) 2883
BstSLI GKGCMC 1 cut(s) 216
BstUI CGCG 1 cut(s) 2856
BstV1I GCAGC 8 cut(s) 261, 478, 963, 1035, 1600, 2076, 2197, 2897
BstV2I GAAGAC 3 cut(s) 552, 950, 2909
BstX2I RGATCY 6 cut(s) 183, 1105, 1122, 1633, 2325, 2777
BstXI CCANNNNNNTGG 1 cut(s) 2281
BstYI RGATCY 6 cut(s) 183, 1105, 1122, 1633, 2325, 2777
Bsu36I CCTNAGG 1 cut(s) 848
BsuI GTATCC 2 cut(s) 651, 2714
BsuRI GGCC 5 cut(s) 114, 214, 707, 1029, 1985
BtrI CACGTC 1 cut(s) 816
BtsCI GGATG 2 cut(s) 1681, 2659
BtsI GCAGTG 2 cut(s) 669, 1526
BtsIMutI CAGTG 8 cut(s) 384, 669, 738, 820, 1204, 1526, 1582, 2691
BveI ACCTGC 2 cut(s) 1053, 2038
Cac8I GCNNGC 7 cut(s) 199, 313, 1053, 1368, 1382, 2559, 2664
CciI TCATGA 1 cut(s) 1276
CfoI GCGC 2 cut(s) 263, 331
Cfr10I RCCGGY 2 cut(s) 315, 2662
Cfr13I GGNCC 9 cut(s) 140, 212, 213, 402, 466, 705, 1475, 2001, 2567
CseI GACGC 3 cut(s) 1044, 1594, 2845
Csp6I GTAC 2 cut(s) 2127, 2716
CviAII CATG 8 cut(s) 91, 523, 1277, 1915, 2369, 2381, 2486, 2584
CviQI GTAC 2 cut(s) 2127, 2716
EaeI YGGCCR 1 cut(s) 1027
Eam1104I CTCTTC 7 cut(s) 242, 386, 906, 915, 1286, 1481, 2213
EarI CTCTTC 7 cut(s) 242, 386, 906, 915, 1286, 1481, 2213
EciI GGCGGA 1 cut(s) 1088
Ecl136II GAGCTC 4 cut(s) 163, 207, 421, 2244
Eco130I CCWWGG 1 cut(s) 2255
Eco147I AGGCCT 1 cut(s) 114
Eco24I GRGCYC 5 cut(s) 165, 209, 216, 423, 2246
Eco47I GGWCC 6 cut(s) 140, 402, 466, 1475, 2001, 2567
Eco47III AGCGCT 1 cut(s) 262
Eco53kI GAGCTC 4 cut(s) 163, 207, 421, 2244
Eco57I CTGAAG 3 cut(s) 272, 1740, 2426
Eco81I CCTNAGG 1 cut(s) 848
EcoICRI GAGCTC 4 cut(s) 163, 207, 421, 2244
EcoNI CCTNNNNNAGG 1 cut(s) 2606
EcoO109I RGGNCCY 3 cut(s) 705, 2001, 2567
EcoRII CCWGG 1 cut(s) 947
EcoT14I CCWWGG 1 cut(s) 2255
EcoT22I ATGCAT 2 cut(s) 524, 1920
EcoT38I GRGCYC 5 cut(s) 165, 209, 216, 423, 2246
ErhI CCWWGG 1 cut(s) 2255
Esp3I CGTCTC 1 cut(s) 806
FaeI CATG 8 cut(s) 94, 526, 1280, 1918, 2372, 2384, 2489, 2587
FalI AAGNNNNNCTT 2 cut(s) 615, 647
FaqI GGGAC 5 cut(s) 218, 421, 2014, 2150, 2405
FatI CATG 8 cut(s) 90, 522, 1276, 1914, 2368, 2380, 2485, 2583
FauI CCCGC 3 cut(s) 94, 1561, 1991
FblI GTMKAC 3 cut(s) 177, 296, 1767
Fnu4HI GCNGC 9 cut(s) 275, 309, 492, 977, 1049, 1614, 2090, 2186, 2886
FokI GGATG 2 cut(s) 1688, 2666
FriOI GRGCYC 5 cut(s) 165, 209, 216, 423, 2246
Fsp4HI GCNGC 9 cut(s) 275, 309, 492, 977, 1049, 1614, 2090, 2186, 2886
FspBI CTAG 4 cut(s) 869, 1377, 1952, 2424
GlaI GCGC 2 cut(s) 262, 330
GluI GCNGC 9 cut(s) 275, 309, 492, 977, 1049, 1614, 2090, 2186, 2886
GsaI CCCAGC 1 cut(s) 335
GsuI CTGGAG 3 cut(s) 22, 2583, 2786
HaeII RGCGCY 2 cut(s) 264, 332
HaeIII GGCC 5 cut(s) 114, 214, 707, 1029, 1985
HgaI GACGC 3 cut(s) 1044, 1594, 2845
HhaI GCGC 2 cut(s) 263, 331
Hin1I GRCGYC 2 cut(s) 299, 1586
Hin1II CATG 8 cut(s) 94, 526, 1280, 1918, 2372, 2384, 2489, 2587
Hin6I GCGC 2 cut(s) 261, 329
HinP1I GCGC 2 cut(s) 261, 329
HincII GTYRAC 3 cut(s) 297, 796, 2478
HindII GTYRAC 3 cut(s) 297, 796, 2478
HindIII AAGCTT 1 cut(s) 591
HinfI GANTC 9 cut(s) 155, 360, 374, 382, 743, 872, 1816, 2152, 2594
HphI GGTGA 2 cut(s) 217, 383
Hpy166II GTNNAC 7 cut(s) 100, 178, 297, 402, 796, 1768, 2478
Hpy8I GTNNAC 7 cut(s) 100, 178, 297, 402, 796, 1768, 2478
Hpy99I CGWCG 7 cut(s) 283, 286, 301, 304, 307, 1655, 2422
HpyAV CCTTC 8 cut(s) 104, 319, 1456, 1857, 1975, 2100, 2315, 2580
HpyCH4IV ACGT 5 cut(s) 231, 299, 815, 1883, 2755
HpySE526I ACGT 5 cut(s) 231, 299, 815, 1883, 2755
Hsp92I GRCGYC 2 cut(s) 299, 1586
Hsp92II CATG 8 cut(s) 94, 526, 1280, 1918, 2372, 2384, 2489, 2587
HspAI GCGC 2 cut(s) 261, 329
KflI GGGWCCC 1 cut(s) 2001
Kpn2I TCCGGA 2 cut(s) 468, 687
KroI GCCGGC 1 cut(s) 2662
KroNI GCCGGC 1 cut(s) 2664
LguI GCTCTTC 2 cut(s) 242, 906
Lsp1109I GCAGC 8 cut(s) 261, 478, 963, 1035, 1600, 2076, 2197, 2897
LweI GCATC 6 cut(s) 738, 1078, 1318, 1692, 1810, 2033
MaeI CTAG 4 cut(s) 869, 1377, 1952, 2424
MaeII ACGT 5 cut(s) 231, 299, 815, 1883, 2755
MaeIII GTNAC 5 cut(s) 371, 1018, 1061, 1385, 1504
MbiI CCGCTC 2 cut(s) 223, 1837
MflI RGATCY 6 cut(s) 183, 1105, 1122, 1633, 2325, 2777
MhlI GDGCHC 6 cut(s) 165, 209, 216, 423, 478, 2246
MlsI TGGCCA 1 cut(s) 1029
MluCI AATT 7 cut(s) 66, 1189, 1559, 1622, 1728, 2201, 2226
MluI ACGCGT 1 cut(s) 2854
MluNI TGGCCA 1 cut(s) 1029
MlyI GAGTC 4 cut(s) 354, 368, 391, 752
MmeI TCCRAC 8 cut(s) 106, 167, 172, 1866, 2101, 2353, 2834, 2856
Mox20I TGGCCA 1 cut(s) 1029
Mph1103I ATGCAT 2 cut(s) 524, 1920
MroI TCCGGA 2 cut(s) 468, 687
MroNI GCCGGC 1 cut(s) 2662
MroXI GAANNNNTTC 1 cut(s) 1224
MscI TGGCCA 1 cut(s) 1029
MseI TTAA 4 cut(s) 1127, 2175, 2697, 2898
MslI CAYNNNNRTG 3 cut(s) 1014, 1517, 2582
Msp20I TGGCCA 1 cut(s) 1029
MspCI CTTAAG 2 cut(s) 1126, 2897
MspR9I CCNGG 4 cut(s) 167, 211, 406, 949
Mva1269I GAATGC 3 cut(s) 524, 1531, 1918
MvaI CCWGG 1 cut(s) 949
MvnI CGCG 1 cut(s) 2856
NaeI GCCGGC 1 cut(s) 2664
NciI CCSGG 3 cut(s) 167, 211, 406
NgoMIV GCCGGC 1 cut(s) 2662
NlaIII CATG 8 cut(s) 94, 526, 1280, 1918, 2372, 2384, 2489, 2587
NmeAIII GCCGAG 1 cut(s) 2773
NmuCI GTSAC 1 cut(s) 371
NsiI ATGCAT 2 cut(s) 524, 1920
NspV TTCGAA 1 cut(s) 2194
PagI TCATGA 1 cut(s) 1276
PceI AGGCCT 1 cut(s) 114
PciSI GCTCTTC 2 cut(s) 242, 906
PcsI WCGNNNNNNNCGW 2 cut(s) 278, 308
PctI GAATGC 3 cut(s) 524, 1531, 1918
PdiI GCCGGC 1 cut(s) 2664
PdmI GAANNNNTTC 1 cut(s) 1224
PfeI GAWTC 5 cut(s) 155, 872, 1816, 2152, 2594
PflFI GACNNNGTC 1 cut(s) 301
PfoI TCCNGGA 1 cut(s) 165
PkrI GCNGC 9 cut(s) 276, 310, 493, 978, 1050, 1615, 2091, 2187, 2887
PleI GAGTC 4 cut(s) 354, 368, 390, 751
PpsI GAGTC 4 cut(s) 354, 368, 390, 751
PpuMI RGGWCCY 2 cut(s) 2001, 2567
PshAI GACNNNNGTC 1 cut(s) 2376
PshBI ATTAAT 1 cut(s) 2175
PsiI TTATAA 1 cut(s) 2910
Psp124BI GAGCTC 4 cut(s) 165, 209, 423, 2246
Psp5II RGGWCCY 2 cut(s) 2001, 2567
Psp6I CCWGG 1 cut(s) 947
PspFI CCCAGC 1 cut(s) 331
PspGI CCWGG 1 cut(s) 947
PspOMI GGGCCC 1 cut(s) 212
PspPI GGNCC 9 cut(s) 140, 212, 213, 402, 466, 705, 1475, 2001, 2567
PspPPI RGGWCCY 2 cut(s) 2001, 2567
PstI CTGCAG 1 cut(s) 2887
PsuI RGATCY 6 cut(s) 183, 1105, 1122, 1633, 2325, 2777
PsyI GACNNNGTC 1 cut(s) 301
RsaI GTAC 2 cut(s) 2128, 2717
RsaNI GTAC 2 cut(s) 2127, 2716
RseI CAYNNNNRTG 3 cut(s) 1014, 1517, 2582
SacI GAGCTC 4 cut(s) 165, 209, 423, 2246
SalI GTCGAC 1 cut(s) 295
SapI GCTCTTC 2 cut(s) 242, 906
SaqAI TTAA 4 cut(s) 1127, 2175, 2697, 2898
SatI GCNGC 9 cut(s) 275, 309, 492, 977, 1049, 1614, 2090, 2186, 2886
Sau96I GGNCC 9 cut(s) 140, 212, 213, 402, 466, 705, 1475, 2001, 2567
SchI GAGTC 4 cut(s) 354, 368, 391, 752
ScrFI CCNGG 4 cut(s) 167, 211, 406, 949
SduI GDGCHC 6 cut(s) 165, 209, 216, 423, 478, 2246
SfaNI GCATC 6 cut(s) 738, 1078, 1318, 1692, 1810, 2033
SfcI CTRYAG 1 cut(s) 2883
SfuI TTCGAA 1 cut(s) 2194
SinI GGWCC 6 cut(s) 140, 402, 466, 1475, 2001, 2567
SmiMI CAYNNNNRTG 3 cut(s) 1014, 1517, 2582
SmlI CTYRAG 6 cut(s) 536, 610, 1126, 1431, 2450, 2897
SmoI CTYRAG 6 cut(s) 536, 610, 1126, 1431, 2450, 2897
Sse9I AATT 7 cut(s) 66, 1189, 1559, 1622, 1728, 2201, 2226
SseBI AGGCCT 1 cut(s) 114
SspMI CTAG 4 cut(s) 869, 1377, 1952, 2424
SstI GAGCTC 4 cut(s) 165, 209, 423, 2246
StuI AGGCCT 1 cut(s) 114
StyD4I CCNGG 4 cut(s) 165, 209, 404, 947
StyI CCWWGG 1 cut(s) 2255
TaiI ACGT 5 cut(s) 234, 302, 818, 1886, 2758
TaqII GACCGA 1 cut(s) 1937
TasI AATT 7 cut(s) 66, 1189, 1559, 1622, 1728, 2201, 2226
TatI WGTACW 1 cut(s) 2126
TauI GCSGC 1 cut(s) 311
TfiI GAWTC 5 cut(s) 155, 872, 1816, 2152, 2594
Tru1I TTAA 4 cut(s) 1127, 2175, 2697, 2898
Tru9I TTAA 4 cut(s) 1127, 2175, 2697, 2898
TscAI CASTG 8 cut(s) 384, 676, 745, 827, 1204, 1533, 1582, 2698
TseFI GTSAC 1 cut(s) 371
TseI GCWGC 8 cut(s) 274, 491, 976, 1048, 1613, 2089, 2185, 2885
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 8 cut(s) 353, 452, 603, 906, 998, 1293, 2005, 2572
TspGWI ACGGA 3 cut(s) 828, 2292, 2518
TspRI CASTG 8 cut(s) 384, 676, 745, 827, 1204, 1533, 1582, 2698
Tth111I GACNNNGTC 1 cut(s) 301
Vha464I CTTAAG 2 cut(s) 1126, 2897
VpaK11BI GGWCC 6 cut(s) 140, 402, 466, 1475, 2001, 2567
VspI ATTAAT 1 cut(s) 2175
XagI CCTNNNNNAGG 1 cut(s) 2606
XbaI TCTAGA 1 cut(s) 1951
XcmI CCANNNNNNNNNTGG 2 cut(s) 827, 1066
XmiI GTMKAC 3 cut(s) 177, 296, 1767
XmnI GAANNNNTTC 1 cut(s) 1224
XspI CTAG 4 cut(s) 869, 1377, 1952, 2424
ZraI GACGTC 1 cut(s) 300
Zsp2I ATGCAT 2 cut(s) 524, 1920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.