Rh2CG064600

Plant family of unknown function (DUF810)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0011157
Physical Location & Seq
Forward (+)
5339861 .. 5345111
5251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG064600.1

Sequence Viewer

Length: 2967 bp
ATGGCCCAGATTATCAGAGACAGAGTTTTCGGCTCCTTTGGTGGTTCCAGACGACACAACAGAGTCCCTATTCCAATTCCACAACCCGAACCCGAACCCGAGCCCGAACGCGTCGTCATGCCCGTTTACCCGGTCGAAGACCTGCCCAACCCGTTCGGGGACTTGGGCCCGCATCTCTCGGACTCGGACCTCCGAGATACCGTCTACGAGATCCTAGTCGGAGCCTGCCGGAGCTCCGGCCCGAAACCGCTCACCTACACCCCGCAGTCGGAGAAGATCACCGACCGGAATTCCCAGTCTTCTTCTTCTTCCTCTTCCTCGCTGTCGTCACTTCAGAGGTCGCTGACGTCATCGGCGAAGAAGGCTCTGGGTTTGCAGCAAACGGCGTCGTCTAAGAGGCTCGGTGGGAGTAGTAAACGGTCCGGGTCGGTTTTTGAGCTCATGCGGGTCCAGATGAGGGTTTCGGAGCAGACCGATACCCGAATCAGGAGAGCCCTTCTCAGAGTTGCTGCTGGTCAGCTCGGACGAAAGATAGAGAGCATGGTTTTGCCTCTGGAGCTGTTACAGCATTTCAGGTCGTTAGATTTTGCGAATCAGCAGGAGTATGAAGCTTGGCAGAGGAGGAATTTGAAGGTTCTTGAAGTGGGACTCCTGGTGTATCCTCATATGCCGTCGGATAGAAAAGACACCGCTCCTCAACAGCTCCGGAATATTATACGTGGGGCCTTGGAGAAACCCATGGAAACTGGAAAGAACACCGAGACAATGCAAGTTCTCCGCAGTCTTGTTATGTCGCTTGCCTGCAGATCGTTTGATGGTACTGTTTCCGACACATGCCACTGGGCAGATGGGTTTCCGTTGAATCTCAGGCTCTACCAAAAGCTCCTGGAATCGTGTTTTGACCTGAATGAAGAAACTTCTATTATTGAAGAGCTTGATGAGGTTTTAGAAGTCATGAAGAAGACCTGGGTAGTCCTTGGAATAAACCAAATTCTGCATAATCTGTGTTTTGCATGGGTTTTATTTCATCGATATGTTACAACTGGCCAAGTGGATAATGACCTGCTGTTTGCAGCCAATAACCTCTTGGCGGAAGTTCAGCAAGATGCCAATGCCACAAAAGATCCATCTTATTTGAAGATCGTAAGTTCTACATTGAATACAATACTGGGTTGGACTGAGAGAAGGCTTCTTGCCTACCGTGATGTTTTCAACACTGGCAATATTGAGTCGATGCAAAACATTGTCTCCCTGGGGGTATTATCAGCAAAAGTACTAGTAGAGGATATCTCTCACGAGTATCGTAGGAAGAGAAAAGAAGTTGATGTGGCACGTGACAGAGTTGACACCTACATAAGATCATCAATACGCACTGCTTTTGCTCAGAAACTGGAAAAAGTGGGCTCCAACAAGCGCCTATCAAAGAGCCAAAAGAATCGTATTCCTACCTTGTCCGTCCTTGCAACAGAAGTTAGCGAACTGGCCTTTAGTGAGAAAGATATATTTGGTCCAGTGTTGAAGAGATGGCACCCTTTTGCAACGGGTGTTGCTATGGCTACGCTGCATTCTTGCTATGGAGACAAGCTCAAGCAATTTGTGGATGGTATCAGTGAGTTGACTCCTGATACTGTACAAGTACTAAAAGCTGCTGACAAATTGGAGAAAGATCTTGTGCAGATTGCTGTCGAAGATTCAGTAGATAGTGAGGATGGCGGGAAATCCATCATACAGGAGATGCCTCCTTATGAGGCTGAAGCTGTAATGGCTGAGCTTGCGAAGGCTTGGATAAGGACAAGATTGGACAGGCTGAAGGAATGGGTTGACAGAAATCTGCAACAAGAGGTCTGGAATCCACAAGCGAACAAAGAACGCTTTGCTCCTTCTGCCATTGAAGTTTTACGCATTGTAGATGAAACATTGGAAGCATTCTTTATGTTGCCTATACCAATGCATCCTGGCTTGATTCCAGAATTGAAGACTGGTCTTGATAGATGTCTTCATTACTATGTATCGAAGGCCAAGACTGGCTGTGGAACCCGAGTGACCTTCATTCCCACTATGCCTGCTTTGACTAGATGTTCAGCGGGATCAAAATTTCATGGTGTATTCAAGAAGAAGGAAAGGTCACATATAAACCAGAGGAGGAAATCTCAGGTTGGAAGTACAAATGGGGATGGTTCGTTTGGGATTCCGCAACTTTGTGTTCGCATTAATACTCTGCAGCATATTCGAATGGAGTTGGGAGTTTTTGAGAAGAGGATTGTTGCTCATCTTGGGAACTTGGAATCCACTCAAAAGGGAGATTTTGCGAATGGGATGGGCAAAATGTTTGAGCTCTCAGCACCTGCTTGTTTAGAAGGGATCCAACAACTTTGTGAGGCAGCAGCTTACAAGGTTGTTTTCCATGAACTAAGTCATGTTCTTTGGGATGGCTTGTATAATGTGGATGCTCCCTCATGTAGAATTGAGCCTTTTCTTCAGGAACTTGAGCAATTTTTGGAGATTATCTCGTCAACAGTTCACAACAGAGTTAGAACGCGTCTTATTACGGATGTCATGAAAGCTTCTTTTGACGGGTTCTTGTTGGTTTTGCTAGCTGGAGGCCCTTCCCGCAGTTTCACACTGAGAGATTCTAACATAATAGAGGAGGATTTTAAATTTCTGACTGATTTGTTCTGGTCAAACGGGGATGGATTACCAGCTGATTTAATAGCTAAGTTGTCAACCACTGTTAAGGACATCCTTCCTCTCTACCGTACTGAGACTGATAGCCTTATTGAAAAGTTCAAGCGCACGACTCTGGAGAACTATGGCTCTTCTGCGAAGTCCCACCTGCCATTGCCTCCAACTTCCGATGAGTGGAATTCCAATGACCCAAATACACTTCTACGTGTCTTATGTCATAGGAATGATGAGACTGCAGCCAAGTTTCTGAAGAAGACTTACAATTTGCCTAAAAAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF810

Protein Analysis

988

Amino Acids

111.28

Weight (kDa)

8.21

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_PATROL1 PF25761 589 - 987 9.5e-168 PATROL1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20010 AT2G20010
fragaria_vesca FvH4_1g05840
malus_domestica MD02G1060400.v1.1 MD15G1193900.v1.1
prunus_persica Prupe.7G222400_v2.0.a1 Prupe.7G222400_v2.0.a1
pyrus_communis pycom02g04960 pycom15g17370
rosa_chinensis RchiOBHm_Chr2g0091501 RchiOBHm_Chr2g0091591
rosa_laevigata RLG00000016231
rosa_multiflora Rmu_sc0002407.1_g000007
rosa_roxburghii Rroxscaffold_2G00149980
rosa_rugosa Rorug02G0018300
rosa_samantha Rh2AG063500 Rh2BG062900 Rh2CG064600 Rh2DG063000
rosa_wichuraiana Rw2G005690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 2353, 2841
AatII GACGTC 1 cut(s) 350
Acc36I ACCTGC 4 cut(s) 150, 1071, 2353, 2841
AccB1I GGYRCC 1 cut(s) 1527
AccBSI CCGCTC 2 cut(s) 250, 692
AccI GTMKAC 1 cut(s) 204
AccII CGCG 2 cut(s) 111, 2539
AccIII TCCGGA 1 cut(s) 705
AclWI GGATC 5 cut(s) 205, 1118, 2095, 2356, 2369
AcoI YGGCCR 1 cut(s) 1045
AcsI RAATTY 6 cut(s) 289, 625, 990, 2093, 2657, 2863
AcuI CTGAAG 5 cut(s) 317, 1773, 1829, 2462, 2954
AcvI CACGTG 1 cut(s) 1334
AcyI GRCGYC 2 cut(s) 347, 386
AfaI GTAC 6 cut(s) 820, 1275, 1632, 1638, 2164, 2758
AfiI CCNNNNNNNGG 6 cut(s) 157, 268, 457, 486, 1090, 2859
AflIII ACRYGT 3 cut(s) 109, 2537, 2890
AhlI ACTAGT 1 cut(s) 1276
AjnI CCWGG 5 cut(s) 651, 885, 965, 1251, 1954
AloI GAACNNNNNNTCC 2 cut(s) 2270, 2302
Alw21I GWGCWC 3 cut(s) 236, 441, 2337
Alw26I GTCTC 6 cut(s) 12, 755, 1252, 1572, 2756, 2909
AlwI GGATC 5 cut(s) 205, 1118, 2095, 2356, 2369
AlwNI CAGNNNCTG 2 cut(s) 1390, 2345
Ama87I CYCGRG 2 cut(s) 98, 2037
Aor13HI TCCGGA 1 cut(s) 705
AoxI GGCC 8 cut(s) 3, 166, 238, 723, 1045, 1482, 2016, 2602
ApaI GGGCCC 1 cut(s) 170
ApeKI GCWGC 9 cut(s) 376, 509, 1073, 1561, 1646, 2221, 2381, 2384, 2921
ApoI RAATTY 6 cut(s) 289, 625, 990, 2093, 2657, 2863
ArsI GACNNNNNNTTYG 8 cut(s) 11, 43, 99, 131, 1052, 1084, 2932, 2964
AseI ATTAAT 1 cut(s) 2211
AspLEI GCGC 2 cut(s) 1416, 2793
AsuC2I CCSGG 2 cut(s) 131, 424
AsuHPI GGTGA 2 cut(s) 244, 271
AsuII TTCGAA 1 cut(s) 2230
AsuNHI GCTAGC 1 cut(s) 2593
AvaI CYCGRG 2 cut(s) 98, 2037
AvaII GGWCC 4 cut(s) 187, 420, 448, 1508
BaeGI GKGCMC 1 cut(s) 170
BalI TGGCCA 1 cut(s) 1047
BamHI GGATCC 1 cut(s) 2361
BanI GGYRCC 1 cut(s) 1527
BanII GRGCYC 7 cut(s) 105, 170, 236, 441, 496, 1406, 2337
BarI GAAGNNNNNNTAC 2 cut(s) 2927, 2959
BauI CACGAG 1 cut(s) 1295
BbrPI CACGTG 1 cut(s) 1334
BbsI GAAGAC 6 cut(s) 144, 291, 968, 1982, 1988, 2945
Bbv12I GWGCWC 3 cut(s) 236, 441, 2337
BbvI GCAGC 9 cut(s) 388, 496, 1085, 1548, 1633, 2233, 2393, 2396, 2933
BceAI ACGGC 2 cut(s) 399, 655
BcgI CGANNNNNNTGC 2 cut(s) 2210, 2244
BciT130I CCWGG 5 cut(s) 653, 887, 967, 1253, 1956
BciVI GTATCC 1 cut(s) 669
BcnI CCSGG 2 cut(s) 131, 424
BcoDI GTCTC 6 cut(s) 12, 755, 1252, 1572, 2756, 2909
BcuI ACTAGT 1 cut(s) 1276
BfaI CTAG 4 cut(s) 215, 1277, 2073, 2594
BfmI CTRYAG 3 cut(s) 802, 2219, 2919
BfoI RGCGCY 1 cut(s) 1417
BfuAI ACCTGC 4 cut(s) 150, 1071, 2353, 2841
BfuI GTATCC 1 cut(s) 669
BglII AGATCT 1 cut(s) 1666
BisI GCNGC 9 cut(s) 377, 510, 1074, 1562, 1647, 2222, 2382, 2385, 2922
BlpI GCTNAGC 1 cut(s) 1767
BlsI GCNGC 9 cut(s) 378, 511, 1075, 1563, 1648, 2223, 2383, 2386, 2923
BmcAI AGTACT 2 cut(s) 1275, 1638
Bme1390I CCNGG 7 cut(s) 131, 424, 653, 887, 967, 1253, 1956
Bme18I GGWCC 4 cut(s) 187, 420, 448, 1508
BmeT110I CYCGRG 2 cut(s) 98, 2037
BmrFI CCNGG 7 cut(s) 131, 424, 653, 887, 967, 1253, 1956
BmrI ACTGGG 3 cut(s) 289, 850, 1178
BmsI GCATC 6 cut(s) 181, 1096, 1224, 1725, 1960, 2437
BmtI GCTAGC 1 cut(s) 2597
BmuI ACTGGG 3 cut(s) 289, 850, 1178
BpiI GAAGAC 6 cut(s) 144, 291, 968, 1982, 1988, 2945
BpmI CTGGAG 3 cut(s) 575, 2619, 2822
Bpu1102I GCTNAGC 1 cut(s) 1767
Bpu14I TTCGAA 1 cut(s) 2230
BpuEI CTTGAG 2 cut(s) 1571, 2507
BpuMI CCSGG 2 cut(s) 131, 424
Bsa29I ATCGAT 1 cut(s) 1030
BsaAI YACGTR 3 cut(s) 719, 1334, 2891
BsaHI GRCGYC 2 cut(s) 347, 386
BsaJI CCNNGG 6 cut(s) 726, 738, 966, 976, 1251, 1252
BsaWI WCCGGW 2 cut(s) 285, 705
BsaXI ACNNNNNCTCC 2 cut(s) 1232, 1262
Bsc4I CCNNNNNNNGG 6 cut(s) 157, 268, 457, 486, 1090, 2859
Bse3DI GCAATG 1 cut(s) 2837
BseAI TCCGGA 1 cut(s) 705
BseBI CCWGG 5 cut(s) 653, 887, 967, 1253, 1956
BseCI ATCGAT 1 cut(s) 1030
BseDI CCNNGG 6 cut(s) 726, 738, 966, 976, 1251, 1252
BseLI CCNNNNNNNGG 6 cut(s) 157, 268, 457, 486, 1090, 2859
BseMI GCAATG 1 cut(s) 2837
BseMII CTCAG 9 cut(s) 514, 880, 1170, 1397, 1758, 2165, 2352, 2615, 2751
BseRI GAGGAG 4 cut(s) 634, 684, 2155, 2660
BseSI GKGCMC 1 cut(s) 170
BseXI GCAGC 9 cut(s) 388, 496, 1085, 1548, 1633, 2233, 2393, 2396, 2933
BsgI GTGCAG 1 cut(s) 1694
Bsh1236I CGCG 2 cut(s) 111, 2539
Bsh1285I CGRYCG 2 cut(s) 135, 286
BshFI GGCC 8 cut(s) 5, 168, 240, 725, 1047, 1484, 2018, 2604
BshNI GGYRCC 1 cut(s) 1527
BshVI ATCGAT 1 cut(s) 1030
BsiEI CGRYCG 2 cut(s) 135, 286
BsiHKAI GWGCWC 3 cut(s) 236, 441, 2337
BsiHKCI CYCGRG 2 cut(s) 98, 2037
BsiSI CCGG 6 cut(s) 131, 229, 237, 286, 423, 706
BslFI GGGAC 4 cut(s) 50, 173, 660, 2812
BslI CCNNNNNNNGG 6 cut(s) 157, 268, 457, 486, 1090, 2859
BsmAI GTCTC 6 cut(s) 12, 755, 1252, 1572, 2756, 2909
BsmFI GGGAC 4 cut(s) 50, 173, 660, 2812
BsmI GAATGC 2 cut(s) 1564, 1925
BsnI GGCC 8 cut(s) 5, 168, 240, 725, 1047, 1484, 2018, 2604
BsoBI CYCGRG 2 cut(s) 98, 2037
Bsp119I TTCGAA 1 cut(s) 2230
Bsp120I GGGCCC 1 cut(s) 166
Bsp1286I GDGCHC 7 cut(s) 105, 170, 236, 441, 496, 1406, 2337
Bsp13I TCCGGA 1 cut(s) 705
Bsp1407I TGTACA 1 cut(s) 1630
Bsp143I GATC 9 cut(s) 210, 276, 806, 1123, 1140, 1358, 1666, 2087, 2361
Bsp1720I GCTNAGC 1 cut(s) 1767
Bsp19I CCATGG 1 cut(s) 738
BspANI GGCC 8 cut(s) 5, 168, 240, 725, 1047, 1484, 2018, 2604
BspCNI CTCAG 9 cut(s) 513, 879, 1171, 1396, 1759, 2164, 2351, 2616, 2752
BspDI ATCGAT 1 cut(s) 1030
BspEI TCCGGA 1 cut(s) 705
BspFNI CGCG 2 cut(s) 111, 2539
BspHI TCATGA 2 cut(s) 954, 2556
BspMAI CTGCAG 3 cut(s) 806, 2223, 2923
BspMI ACCTGC 4 cut(s) 150, 1071, 2353, 2841
BspOI GCTAGC 1 cut(s) 2597
BspPI GGATC 5 cut(s) 205, 1118, 2095, 2356, 2369
BspQI GCTCTTC 2 cut(s) 924, 2821
BspT104I TTCGAA 1 cut(s) 2230
BspT107I GGYRCC 1 cut(s) 1527
BsrBI CCGCTC 2 cut(s) 250, 692
BsrDI GCAATG 1 cut(s) 2837
BsrGI TGTACA 1 cut(s) 1630
BssECI CCNNGG 6 cut(s) 726, 738, 966, 976, 1251, 1252
BssMI GATC 9 cut(s) 210, 276, 806, 1123, 1140, 1358, 1666, 2087, 2361
BssNI GRCGYC 2 cut(s) 347, 386
BssSI CACGAG 1 cut(s) 1295
BssT1I CCWWGG 3 cut(s) 726, 738, 976
Bst2BI CACGAG 1 cut(s) 1295
Bst2UI CCWGG 5 cut(s) 653, 887, 967, 1253, 1956
Bst4CI ACNGT 8 cut(s) 202, 420, 823, 1202, 1630, 2518, 2731, 2756
Bst6I CTCTTC 6 cut(s) 319, 924, 1304, 1514, 2249, 2821
BstACI GRCGYC 2 cut(s) 347, 386
BstAUI TGTACA 1 cut(s) 1630
BstBAI YACGTR 3 cut(s) 719, 1334, 2891
BstBI TTCGAA 1 cut(s) 2230
BstC8I GCNNGC 7 cut(s) 170, 226, 798, 802, 1773, 2064, 2595
BstDSI CCRYGG 1 cut(s) 738
BstFNI CGCG 2 cut(s) 111, 2539
BstH2I RGCGCY 1 cut(s) 1417
BstHHI GCGC 2 cut(s) 1416, 2793
BstKTI GATC 9 cut(s) 213, 279, 809, 1126, 1143, 1361, 1669, 2090, 2364
BstMAI GTCTC 6 cut(s) 12, 755, 1252, 1572, 2756, 2909
BstMBI GATC 9 cut(s) 210, 276, 806, 1123, 1140, 1358, 1666, 2087, 2361
BstMCI CGRYCG 2 cut(s) 135, 286
BstMWI GCNNNNNNNGC 8 cut(s) 362, 556, 565, 1763, 1772, 1883, 2610, 2959
BstNI CCWGG 5 cut(s) 653, 887, 967, 1253, 1956
BstNSI RCATGY 1 cut(s) 837
BstSCI CCNGG 7 cut(s) 129, 422, 651, 885, 965, 1251, 1954
BstSFI CTRYAG 3 cut(s) 802, 2219, 2919
BstSLI GKGCMC 1 cut(s) 170
BstUI CGCG 2 cut(s) 111, 2539
BstV1I GCAGC 9 cut(s) 388, 496, 1085, 1548, 1633, 2233, 2393, 2396, 2933
BstV2I GAAGAC 6 cut(s) 144, 291, 968, 1982, 1988, 2945
BstX2I RGATCY 4 cut(s) 210, 1123, 1666, 2361
BstYI RGATCY 4 cut(s) 210, 1123, 1666, 2361
Bsu15I ATCGAT 1 cut(s) 1030
BsuI GTATCC 1 cut(s) 669
BsuRI GGCC 8 cut(s) 5, 168, 240, 725, 1047, 1484, 2018, 2604
BsuTUI ATCGAT 1 cut(s) 1030
BtgI CCRYGG 1 cut(s) 738
BtsI GCAGTG 1 cut(s) 1371
BtsIMutI CAGTG 7 cut(s) 838, 1215, 1371, 1518, 1615, 2621, 2727
BveI ACCTGC 4 cut(s) 150, 1071, 2353, 2841
Cac8I GCNNGC 7 cut(s) 170, 226, 798, 802, 1773, 2064, 2595
CaiI CAGNNNCTG 2 cut(s) 1390, 2345
CciI TCATGA 2 cut(s) 954, 2556
CfoI GCGC 2 cut(s) 1416, 2793
ClaI ATCGAT 1 cut(s) 1030
CpoI CGGWCCG 1 cut(s) 420
CseI GACGC 3 cut(s) 100, 375, 2528
Csp6I GTAC 6 cut(s) 819, 1274, 1631, 1637, 2163, 2757
CspI CGGWCCG 1 cut(s) 420
CviQI GTAC 6 cut(s) 819, 1274, 1631, 1637, 2163, 2757
DpnI GATC 9 cut(s) 212, 278, 808, 1125, 1142, 1360, 1668, 2089, 2363
DpnII GATC 9 cut(s) 210, 276, 806, 1123, 1140, 1358, 1666, 2087, 2361
DraI TTTAAA 1 cut(s) 2656
EaeI YGGCCR 1 cut(s) 1045
Eam1104I CTCTTC 6 cut(s) 319, 924, 1304, 1514, 2249, 2821
EarI CTCTTC 6 cut(s) 319, 924, 1304, 1514, 2249, 2821
EciI GGCGGA 1 cut(s) 1106
Ecl136II GAGCTC 3 cut(s) 234, 439, 2335
Eco130I CCWWGG 3 cut(s) 726, 738, 976
Eco24I GRGCYC 7 cut(s) 105, 170, 236, 441, 496, 1406, 2337
Eco32I GATATC 1 cut(s) 1288
Eco47I GGWCC 4 cut(s) 187, 420, 448, 1508
Eco53kI GAGCTC 3 cut(s) 234, 439, 2335
Eco57I CTGAAG 5 cut(s) 317, 1773, 1829, 2462, 2954
Eco72I CACGTG 1 cut(s) 1334
Eco88I CYCGRG 2 cut(s) 98, 2037
EcoICRI GAGCTC 3 cut(s) 234, 439, 2335
EcoO109I RGGNCCY 2 cut(s) 723, 2603
EcoRI GAATTC 2 cut(s) 289, 2863
EcoRII CCWGG 5 cut(s) 651, 885, 965, 1251, 1954
EcoRV GATATC 1 cut(s) 1288
EcoT14I CCWWGG 3 cut(s) 726, 738, 976
EcoT22I ATGCAT 1 cut(s) 1953
EcoT38I GRGCYC 7 cut(s) 105, 170, 236, 441, 496, 1406, 2337
ErhI CCWWGG 3 cut(s) 726, 738, 976
FaqI GGGAC 4 cut(s) 50, 173, 660, 2812
FauI CCCGC 6 cut(s) 177, 270, 438, 1706, 2077, 2618
FauNDI CATATG 1 cut(s) 666
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 9 cut(s) 377, 510, 1074, 1562, 1647, 2222, 2382, 2385, 2922
FriOI GRGCYC 7 cut(s) 105, 170, 236, 441, 496, 1406, 2337
Fsp4HI GCNGC 9 cut(s) 377, 510, 1074, 1562, 1647, 2222, 2382, 2385, 2922
FspBI CTAG 4 cut(s) 215, 1277, 2073, 2594
GlaI GCGC 2 cut(s) 1415, 2792
GluI GCNGC 9 cut(s) 377, 510, 1074, 1562, 1647, 2222, 2382, 2385, 2922
GsuI CTGGAG 3 cut(s) 575, 2619, 2822
HaeII RGCGCY 1 cut(s) 1417
HaeIII GGCC 8 cut(s) 5, 168, 240, 725, 1047, 1484, 2018, 2604
HapII CCGG 6 cut(s) 131, 229, 237, 286, 423, 706
HgaI GACGC 3 cut(s) 100, 375, 2528
HhaI GCGC 2 cut(s) 1416, 2793
Hin1I GRCGYC 2 cut(s) 347, 386
Hin6I GCGC 2 cut(s) 1414, 2791
HinP1I GCGC 2 cut(s) 1414, 2791
HincII GTYRAC 5 cut(s) 1345, 1617, 1822, 2514, 2724
HindII GTYRAC 5 cut(s) 1345, 1617, 1822, 2514, 2724
HindIII AAGCTT 2 cut(s) 609, 2562
HpaII CCGG 6 cut(s) 131, 229, 237, 286, 423, 706
HphI GGTGA 2 cut(s) 244, 271
Hpy166II GTNNAC 9 cut(s) 127, 205, 416, 1345, 1617, 1822, 2514, 2521, 2724
Hpy8I GTNNAC 9 cut(s) 127, 205, 416, 1345, 1617, 1822, 2514, 2521, 2724
Hpy99I CGWCG 3 cut(s) 116, 391, 676
HpyCH4III ACNGT 8 cut(s) 202, 420, 823, 1202, 1630, 2518, 2731, 2756
HpyCH4IV ACGT 4 cut(s) 347, 718, 1333, 2890
HpyF10VI GCNNNNNNNGC 8 cut(s) 362, 556, 565, 1763, 1772, 1883, 2610, 2959
HpySE526I ACGT 4 cut(s) 347, 718, 1333, 2890
Hsp92I GRCGYC 2 cut(s) 347, 386
HspAI GCGC 2 cut(s) 1414, 2791
Kpn2I TCCGGA 1 cut(s) 705
Kzo9I GATC 9 cut(s) 210, 276, 806, 1123, 1140, 1358, 1666, 2087, 2361
LguI GCTCTTC 2 cut(s) 924, 2821
Lsp1109I GCAGC 9 cut(s) 388, 496, 1085, 1548, 1633, 2233, 2393, 2396, 2933
LweI GCATC 6 cut(s) 181, 1096, 1224, 1725, 1960, 2437
MaeI CTAG 4 cut(s) 215, 1277, 2073, 2594
MaeII ACGT 4 cut(s) 347, 718, 1333, 2890
MaeIII GTNAC 6 cut(s) 327, 561, 1036, 1334, 2041, 2124
MalI GATC 9 cut(s) 212, 278, 808, 1125, 1142, 1360, 1668, 2089, 2363
MbiI CCGCTC 2 cut(s) 250, 692
MboI GATC 9 cut(s) 210, 276, 806, 1123, 1140, 1358, 1666, 2087, 2361
MflI RGATCY 4 cut(s) 210, 1123, 1666, 2361
MhlI GDGCHC 7 cut(s) 105, 170, 236, 441, 496, 1406, 2337
MlsI TGGCCA 1 cut(s) 1047
MluI ACGCGT 2 cut(s) 109, 2537
MluNI TGGCCA 1 cut(s) 1047
MlyI GAGTC 6 cut(s) 72, 176, 642, 1238, 1612, 2791
MmeI TCCRAC 9 cut(s) 199, 249, 654, 852, 1154, 1431, 2137, 2389, 2870
Mox20I TGGCCA 1 cut(s) 1047
Mph1103I ATGCAT 1 cut(s) 1953
MroI TCCGGA 1 cut(s) 705
MscI TGGCCA 1 cut(s) 1047
MseI TTAA 4 cut(s) 2211, 2655, 2708, 2733
MslI CAYNNNNRTG 3 cut(s) 1032, 2004, 2907
Msp20I TGGCCA 1 cut(s) 1047
MspA1I CMGCKG 2 cut(s) 2084, 2702
MspI CCGG 6 cut(s) 131, 229, 237, 286, 423, 706
MspR9I CCNGG 7 cut(s) 131, 424, 653, 887, 967, 1253, 1956
Mva1269I GAATGC 2 cut(s) 1564, 1925
MvaI CCWGG 5 cut(s) 653, 887, 967, 1253, 1956
MvnI CGCG 2 cut(s) 111, 2539
MwoI GCNNNNNNNGC 8 cut(s) 362, 556, 565, 1763, 1772, 1883, 2610, 2959
NciI CCSGG 2 cut(s) 131, 424
NcoI CCATGG 1 cut(s) 738
NdeI CATATG 1 cut(s) 666
NdeII GATC 9 cut(s) 210, 276, 806, 1123, 1140, 1358, 1666, 2087, 2361
NheI GCTAGC 1 cut(s) 2593
NmuCI GTSAC 4 cut(s) 327, 1334, 2041, 2124
NsiI ATGCAT 1 cut(s) 1953
NspI RCATGY 1 cut(s) 837
NspV TTCGAA 1 cut(s) 2230
PagI TCATGA 2 cut(s) 954, 2556
PaqCI CACCTGC 2 cut(s) 2353, 2841
PasI CCCWGGG 1 cut(s) 1252
PciSI GCTCTTC 2 cut(s) 924, 2821
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 353
PctI GAATGC 2 cut(s) 1564, 1925
PfoI TCCNGGA 1 cut(s) 885
PkrI GCNGC 9 cut(s) 378, 511, 1075, 1563, 1648, 2223, 2383, 2386, 2923
PleI GAGTC 6 cut(s) 71, 176, 642, 1237, 1612, 2791
PmaCI CACGTG 1 cut(s) 1334
PmlI CACGTG 1 cut(s) 1334
PpsI GAGTC 6 cut(s) 71, 176, 642, 1237, 1612, 2791
Ppu21I YACGTR 3 cut(s) 719, 1334, 2891
PshBI ATTAAT 1 cut(s) 2211
Psp124BI GAGCTC 3 cut(s) 236, 441, 2337
Psp6I CCWGG 5 cut(s) 651, 885, 965, 1251, 1954
PspCI CACGTG 1 cut(s) 1334
PspGI CCWGG 5 cut(s) 651, 885, 965, 1251, 1954
PspOMI GGGCCC 1 cut(s) 166
PstI CTGCAG 3 cut(s) 806, 2223, 2923
PstNI CAGNNNCTG 2 cut(s) 1390, 2345
PsuI RGATCY 4 cut(s) 210, 1123, 1666, 2361
PvuII CAGCTG 1 cut(s) 2702
RsaI GTAC 6 cut(s) 820, 1275, 1632, 1638, 2164, 2758
RsaNI GTAC 6 cut(s) 819, 1274, 1631, 1637, 2163, 2757
RseI CAYNNNNRTG 3 cut(s) 1032, 2004, 2907
Rsr2I CGGWCCG 1 cut(s) 420
RsrII CGGWCCG 1 cut(s) 420
SacI GAGCTC 3 cut(s) 236, 441, 2337
SapI GCTCTTC 2 cut(s) 924, 2821
SaqAI TTAA 4 cut(s) 2211, 2655, 2708, 2733
SatI GCNGC 9 cut(s) 377, 510, 1074, 1562, 1647, 2222, 2382, 2385, 2922
Sau3AI GATC 9 cut(s) 210, 276, 806, 1123, 1140, 1358, 1666, 2087, 2361
ScaI AGTACT 2 cut(s) 1275, 1638
SchI GAGTC 6 cut(s) 72, 176, 642, 1238, 1612, 2791
ScrFI CCNGG 7 cut(s) 131, 424, 653, 887, 967, 1253, 1956
SduI GDGCHC 7 cut(s) 105, 170, 236, 441, 496, 1406, 2337
SfaNI GCATC 6 cut(s) 181, 1096, 1224, 1725, 1960, 2437
SfcI CTRYAG 3 cut(s) 802, 2219, 2919
SfuI TTCGAA 1 cut(s) 2230
SinI GGWCC 4 cut(s) 187, 420, 448, 1508
SmiMI CAYNNNNRTG 3 cut(s) 1032, 2004, 2907
SmlI CTYRAG 2 cut(s) 1586, 2486
SmoI CTYRAG 2 cut(s) 1586, 2486
SpeI ACTAGT 1 cut(s) 1276
SspI AATATT 2 cut(s) 712, 1225
SspMI CTAG 4 cut(s) 215, 1277, 2073, 2594
SstI GAGCTC 3 cut(s) 236, 441, 2337
StyD4I CCNGG 7 cut(s) 129, 422, 651, 885, 965, 1251, 1954
StyI CCWWGG 3 cut(s) 726, 738, 976
TaaI ACNGT 8 cut(s) 202, 420, 823, 1202, 1630, 2518, 2731, 2756
TaiI ACGT 4 cut(s) 350, 721, 1336, 2893
TaqI TCGA 6 cut(s) 135, 1030, 1232, 1686, 2012, 2230
TaqII GACCGA 1 cut(s) 488
TatI WGTACW 4 cut(s) 1273, 1630, 1636, 2162
Tru1I TTAA 4 cut(s) 2211, 2655, 2708, 2733
Tru9I TTAA 4 cut(s) 2211, 2655, 2708, 2733
TscAI CASTG 7 cut(s) 845, 1222, 1378, 1518, 1615, 2628, 2734
TseFI GTSAC 4 cut(s) 327, 1334, 2041, 2124
TseI GCWGC 9 cut(s) 376, 509, 1073, 1561, 1646, 2221, 2381, 2384, 2921
Tsp45I GTSAC 4 cut(s) 327, 1334, 2041, 2124
TspGWI ACGGA 3 cut(s) 846, 1444, 2564
TspRI CASTG 7 cut(s) 845, 1222, 1378, 1518, 1615, 2628, 2734
VpaK11BI GGWCC 4 cut(s) 187, 420, 448, 1508
VspI ATTAAT 1 cut(s) 2211
XapI RAATTY 6 cut(s) 289, 625, 990, 2093, 2657, 2863
XceI RCATGY 1 cut(s) 837
XcmI CCANNNNNNNNNTGG 2 cut(s) 845, 1084
XmiI GTMKAC 1 cut(s) 204
XspI CTAG 4 cut(s) 215, 1277, 2073, 2594
ZraI GACGTC 1 cut(s) 348
ZrmI AGTACT 2 cut(s) 1275, 1638
Zsp2I ATGCAT 1 cut(s) 1953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.