Rw2G005690

Plant family of unknown function (DUF810)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0011157
Physical Location & Seq
Reverse (-)
5402392 .. 5406675
4284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G005690.1

Sequence Viewer

Length: 2973 bp
ATGGCCCAGATTATCAGAGACAGAGTTTTCGGCTCCTTTGGTGGTTCCAGACGACACAGCAGAGTCCCTATTCCAATTCCACAACCCGAACCCGAACCCGAACCAGAACGCGTCGTGATGCCCGTTTACCCGGTGGAAGACCTGCCCAACCCGTTTGGGGACTTGGGCCCGCATCTCTCCGACTCGGACCTCCGAGAAACCGTCTACGAGATCCTAGTCGGAGCCTGCCGGAGCTCCGGCCCGAAACCGCTCACCTACACCCCGCAGTCGGAGAAGATCACCGACCGGAATTCCCAGTCTTCTTCTTCTTCTTCTTCTTCTTCCTCGCTGTCGTCACTTCAGAGGTCGCTGACGTCATCGGCGAAGAAGGCTCTGGGTTTGCAGCAAACGGCGTCGTCTAAGAGGCTCGGTGGGAGTAGTAAACGGTCCGGGTCGGTTTTTGAGCTCATGCGGGTCCAGATGAGGGTTTCGGAGCAGACCGATACCCGAATCAGGAGAGCCCTTCTCAGAGTTGCTGCTGGTCAGCTCGGACGAAAGATAGAGAGCATGGTTTTGCCTCTGGAGCTGTTACAGCATTTCAGGTCGTTAGATTTTGCGAATCAGCAGGAGTATGAAGCTTGGCAGAGGAGGAATTTGAAGGTTCTTGAAGTGGGACTCCTGGTGTATCCTCATATGCCGTCGGATAGAAAAGACACCGCTCCTCAACAGCTCCGGAAGATTATACGTGGGGCCTTGGAGAAACCCATGGAAACTGGAAAGAACACCGAGACAATGCAAGTTCTCCGCAGTCTTGTTATGTCGCTTGCCTGCAGATCGTTTGATGGTACTGTTTCCGACACATGCCACTGGGCAGATGGGTTTCCGTTGAATCTCAGGCTCTACCAAAAGCTCCTGGAATCGTGTTTTGACCTGAATGAAGAAACTTCTATTATTGAAGAGCTTGATGAGGTTTTAGAAGTCATGAAGAAGACCTGGGTAGTCCTTGGAATAAACCAAATTCTGCATAATCTGTGTTTCGCATGGGTTTTATTTCATCGATATGTTACAACTGGCCAAGTGGATAATGACCTGCTGTTTGCAGCCAATAACCTCTTGGCGGAAGTTCAGCAAGATGCCAATGCCACAAAAGATCCATCTTATTTGAAGATCGTAAGTTCAACATTGAATGCAATACTGGGTTGGACTGAGAGAAGGCTTCTTGCCTACCGTAATGTTTTCAACACTGGCAATATTGAGTCGATGCAAAACATTGTCTCCCTGGGGGTATTATCAGCAAAAGTACTAGTAGAGGATATCTCTCACGAATATCGTAGGAAGAGAAAAGAAGTTGATGTGGCACATGACAGGGTTGACACCTACATAAGATCATCAATACGCACCGCTTTTGCTCAGAAACTGGAAAAAGTGGGCTCCAACAAGCGCCTATCAAAGAGCCAAAAGAATCGTATTCCTACCTTGTCCGTCCTTGCAACAGAAGTTAGCGAATTGGCCTTTAGTGAGAAAGATATATTTGGTCCAGTGTTGAAGAGATGGCACCCTTTTGCAACGGGTGTTGCTATGGCTACGCTGCATTCTTGCTATGGAGACGAGCTCAAGCAATTTGTGGATGGTATCAGTGAGTTGACTCCTGATACTGTACAAGTACTAAAAGCTGCTGACAAATTGGAGAAAGATCTTGTGCAGATTGCTGTCGAAGATTCAGTAGATAGTGAGGATGGCGGGAAATCCATCATACAGGAGATGCCTCCTTATGAGGCTGAAGCTGTAATGGCTGAGCTTGCGAAGGCTTGGATAAGGACAAGATTGGACAGGCTGAAGGAATGGGTTGACAGAAATCTGCAACAAGAGGTCTGGAATCCACAAGCGAACAAAGAATGCTTTGCTCCTTCTTCCATTGAAGTTTTACGCATTGTAGATGAAACATTGGAAGCATTCTTTATGTTGCCTATACCAATGCATCCTGTCTTGATTCCAGAATTGAAGACTGGTCTTGATAGATGTCTTCAATACTATGTATCGAAAGCCAAGACTGGCTGTGGAACCCGAATTACCTTCATTCCCACTATGCCTGCTTTGACTAGATGTTCAGCGGGATCAAAATTTCATGGTGTATTCAAGAAGAAGGAAAGGTCACATATAAACCAGAGGAGGAAATCTCAGGTTGGAAGTACAAATGGGGATGGTTCGTTTGGGATTCCGCAACTTTGTGTTCGCATTAATACTCTGCAGCATATTCGAATGGAGTTGGGAGTTTTTGAGAAGAGGATTGTTGCTCATCTTGGGAACTTGGAATCCACTCAAAAGGGAGATTTTGCGAATGGGATGGGCAAAATGTTTGAGCTCTCAGCACCTGCTTGTTTAGAAGGGATCCAACAACTTTGTGAGGCAACAGCTTACAAGGTTGTTTTCCATGAACTAAGTCATGTTCTTTGGGATGGCTTGTATAATGTGGATGCTCCCTCATGTAGAATTGAGCCTTTTCTTCAGGAACTTGAGCAATTTTTGGAGATTATCTCGTCAACAGTTCACAACAGAGTTAGAACGCGTCTTATTACGGATGTCATGAAAGCTTCTTTTGACGGGTTCTTGTTGGTTTTGCTAGCTGGAGGCCCTTCCCGCAGTTTCACAGTGAGAGATTCTAACATAATAGAGGAGGATTTTAAATTTCTGACTGATTTGTTCTGGTCAAACGGGGATGGATTACCAGCTGATTTAATAGCTAAGTTGTCAACCACTGTTAAGGACATCCTTCCTCTCTACCGTACTGAGACTGATAGCCTTATTGAAAAGTTCAAGCGCACGACTCTGGAGAGCTATGGCTCTTCTGCGAAGTCCCACCTGCCATTGCCTCCAACTTCCGATGAGTGGAATTCCAATGACCCAAATACACTTCTACGTGTCTTATGTCATAGGAATGATGAGACTGCAGCCAAGTTTCTGAAGAAGACTTACAATTTGCCTAAAAAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF810

Protein Analysis

990

Amino Acids

111.41

Weight (kDa)

7.82

Isoelectric Point (pI)

51.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_PATROL1 PF25761 591 - 989 3.2e-167 PATROL1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20010 AT2G20010
fragaria_vesca FvH4_1g05840
malus_domestica MD02G1060400.v1.1 MD15G1193900.v1.1
prunus_persica Prupe.7G222400_v2.0.a1 Prupe.7G222400_v2.0.a1
pyrus_communis pycom02g04960 pycom15g17370
rosa_chinensis RchiOBHm_Chr2g0091501 RchiOBHm_Chr2g0091591
rosa_laevigata RLG00000016231
rosa_multiflora Rmu_sc0002407.1_g000007
rosa_roxburghii Rroxscaffold_2G00149980
rosa_rugosa Rorug02G0018300
rosa_samantha Rh2AG063500 Rh2BG062900 Rh2CG064600 Rh2DG063000
rosa_wichuraiana Rw2G005690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 2359, 2847
AatII GACGTC 1 cut(s) 356
Acc36I ACCTGC 4 cut(s) 150, 1077, 2359, 2847
AccB1I GGYRCC 1 cut(s) 1533
AccBSI CCGCTC 2 cut(s) 250, 698
AccI GTMKAC 1 cut(s) 204
AccII CGCG 2 cut(s) 111, 2545
AccIII TCCGGA 1 cut(s) 711
AclWI GGATC 5 cut(s) 205, 1124, 2101, 2362, 2375
AcoI YGGCCR 1 cut(s) 1051
AcsI RAATTY 6 cut(s) 289, 631, 996, 2099, 2663, 2869
AcuI CTGAAG 5 cut(s) 323, 1779, 1835, 2468, 2960
AcyI GRCGYC 2 cut(s) 353, 392
AfaI GTAC 6 cut(s) 826, 1281, 1638, 1644, 2170, 2764
AfiI CCNNNNNNNGG 6 cut(s) 157, 268, 463, 492, 1096, 2865
AflIII ACRYGT 3 cut(s) 109, 2543, 2896
AhlI ACTAGT 1 cut(s) 1282
AjnI CCWGG 4 cut(s) 657, 891, 971, 1257
AloI GAACNNNNNNTCC 2 cut(s) 2276, 2308
Alw21I GWGCWC 4 cut(s) 236, 447, 1593, 2343
Alw26I GTCTC 6 cut(s) 12, 761, 1258, 1578, 2762, 2915
AlwI GGATC 5 cut(s) 205, 1124, 2101, 2362, 2375
AlwNI CAGNNNCTG 2 cut(s) 1396, 2351
Aor13HI TCCGGA 1 cut(s) 711
AoxI GGCC 7 cut(s) 3, 166, 238, 729, 1051, 1488, 2608
ApaI GGGCCC 1 cut(s) 170
ApeKI GCWGC 7 cut(s) 382, 515, 1079, 1567, 1652, 2227, 2927
ApoI RAATTY 6 cut(s) 289, 631, 996, 2099, 2663, 2869
ArsI GACNNNNNNTTYG 6 cut(s) 11, 43, 1058, 1090, 2938, 2970
AseI ATTAAT 1 cut(s) 2217
AspLEI GCGC 2 cut(s) 1422, 2799
AsuC2I CCSGG 2 cut(s) 131, 430
AsuHPI GGTGA 2 cut(s) 244, 271
AsuII TTCGAA 1 cut(s) 2236
AsuNHI GCTAGC 1 cut(s) 2599
AvaII GGWCC 4 cut(s) 187, 426, 454, 1514
BaeGI GKGCMC 1 cut(s) 170
BalI TGGCCA 1 cut(s) 1053
BamHI GGATCC 1 cut(s) 2367
BanI GGYRCC 1 cut(s) 1533
BanII GRGCYC 7 cut(s) 170, 236, 447, 502, 1412, 1593, 2343
BarI GAAGNNNNNNTAC 2 cut(s) 2933, 2965
BbsI GAAGAC 6 cut(s) 144, 291, 974, 1988, 1994, 2951
Bbv12I GWGCWC 4 cut(s) 236, 447, 1593, 2343
BbvI GCAGC 7 cut(s) 394, 502, 1091, 1554, 1639, 2239, 2939
BceAI ACGGC 2 cut(s) 405, 661
BcgI CGANNNNNNTGC 2 cut(s) 2216, 2250
BciT130I CCWGG 4 cut(s) 659, 893, 973, 1259
BciVI GTATCC 1 cut(s) 675
BcnI CCSGG 2 cut(s) 131, 430
BcoDI GTCTC 6 cut(s) 12, 761, 1258, 1578, 2762, 2915
BcuI ACTAGT 1 cut(s) 1282
BfaI CTAG 4 cut(s) 215, 1283, 2079, 2600
BfmI CTRYAG 3 cut(s) 808, 2225, 2925
BfoI RGCGCY 1 cut(s) 1423
BfuAI ACCTGC 4 cut(s) 150, 1077, 2359, 2847
BfuI GTATCC 1 cut(s) 675
BglII AGATCT 1 cut(s) 1672
BisI GCNGC 7 cut(s) 383, 516, 1080, 1568, 1653, 2228, 2928
BlpI GCTNAGC 1 cut(s) 1773
BlsI GCNGC 7 cut(s) 384, 517, 1081, 1569, 1654, 2229, 2929
BmcAI AGTACT 2 cut(s) 1281, 1644
Bme1390I CCNGG 6 cut(s) 131, 430, 659, 893, 973, 1259
Bme18I GGWCC 4 cut(s) 187, 426, 454, 1514
BmrFI CCNGG 6 cut(s) 131, 430, 659, 893, 973, 1259
BmrI ACTGGG 3 cut(s) 289, 856, 1184
BmsI GCATC 7 cut(s) 108, 181, 1102, 1230, 1731, 1966, 2443
BmtI GCTAGC 1 cut(s) 2603
BmuI ACTGGG 3 cut(s) 289, 856, 1184
BpiI GAAGAC 6 cut(s) 144, 291, 974, 1988, 1994, 2951
BpmI CTGGAG 3 cut(s) 581, 2625, 2828
Bpu1102I GCTNAGC 1 cut(s) 1773
Bpu14I TTCGAA 1 cut(s) 2236
BpuEI CTTGAG 2 cut(s) 1577, 2513
BpuMI CCSGG 2 cut(s) 131, 430
Bsa29I ATCGAT 1 cut(s) 1036
BsaAI YACGTR 2 cut(s) 725, 2897
BsaHI GRCGYC 2 cut(s) 353, 392
BsaJI CCNNGG 6 cut(s) 732, 744, 972, 982, 1257, 1258
BsaWI WCCGGW 2 cut(s) 285, 711
BsaXI ACNNNNNCTCC 2 cut(s) 1238, 1268
Bsc4I CCNNNNNNNGG 6 cut(s) 157, 268, 463, 492, 1096, 2865
Bse3DI GCAATG 1 cut(s) 2843
BseAI TCCGGA 1 cut(s) 711
BseBI CCWGG 4 cut(s) 659, 893, 973, 1259
BseCI ATCGAT 1 cut(s) 1036
BseDI CCNNGG 6 cut(s) 732, 744, 972, 982, 1257, 1258
BseLI CCNNNNNNNGG 6 cut(s) 157, 268, 463, 492, 1096, 2865
BseMI GCAATG 1 cut(s) 2843
BseMII CTCAG 8 cut(s) 520, 886, 1176, 1403, 1764, 2171, 2358, 2757
BseRI GAGGAG 4 cut(s) 640, 690, 2161, 2666
BseSI GKGCMC 1 cut(s) 170
BseXI GCAGC 7 cut(s) 394, 502, 1091, 1554, 1639, 2239, 2939
BsgI GTGCAG 1 cut(s) 1700
Bsh1236I CGCG 2 cut(s) 111, 2545
Bsh1285I CGRYCG 1 cut(s) 286
BshFI GGCC 7 cut(s) 5, 168, 240, 731, 1053, 1490, 2610
BshNI GGYRCC 1 cut(s) 1533
BshVI ATCGAT 1 cut(s) 1036
BsiEI CGRYCG 1 cut(s) 286
BsiHKAI GWGCWC 4 cut(s) 236, 447, 1593, 2343
BsiSI CCGG 6 cut(s) 131, 229, 237, 286, 429, 712
BslFI GGGAC 4 cut(s) 50, 173, 666, 2818
BslI CCNNNNNNNGG 6 cut(s) 157, 268, 463, 492, 1096, 2865
BsmAI GTCTC 6 cut(s) 12, 761, 1258, 1578, 2762, 2915
BsmBI CGTCTC 1 cut(s) 1578
BsmFI GGGAC 4 cut(s) 50, 173, 666, 2818
BsmI GAATGC 4 cut(s) 1171, 1570, 1880, 1931
BsnI GGCC 7 cut(s) 5, 168, 240, 731, 1053, 1490, 2610
Bsp119I TTCGAA 1 cut(s) 2236
Bsp120I GGGCCC 1 cut(s) 166
Bsp1286I GDGCHC 7 cut(s) 170, 236, 447, 502, 1412, 1593, 2343
Bsp13I TCCGGA 1 cut(s) 711
Bsp1407I TGTACA 1 cut(s) 1636
Bsp143I GATC 9 cut(s) 210, 276, 812, 1129, 1146, 1364, 1672, 2093, 2367
Bsp1720I GCTNAGC 1 cut(s) 1773
Bsp19I CCATGG 1 cut(s) 744
BspANI GGCC 7 cut(s) 5, 168, 240, 731, 1053, 1490, 2610
BspCNI CTCAG 8 cut(s) 519, 885, 1177, 1402, 1765, 2170, 2357, 2758
BspDI ATCGAT 1 cut(s) 1036
BspEI TCCGGA 1 cut(s) 711
BspFNI CGCG 2 cut(s) 111, 2545
BspHI TCATGA 2 cut(s) 960, 2562
BspMAI CTGCAG 3 cut(s) 812, 2229, 2929
BspMI ACCTGC 4 cut(s) 150, 1077, 2359, 2847
BspOI GCTAGC 1 cut(s) 2603
BspPI GGATC 5 cut(s) 205, 1124, 2101, 2362, 2375
BspQI GCTCTTC 2 cut(s) 930, 2827
BspT104I TTCGAA 1 cut(s) 2236
BspT107I GGYRCC 1 cut(s) 1533
BsrBI CCGCTC 2 cut(s) 250, 698
BsrDI GCAATG 1 cut(s) 2843
BsrGI TGTACA 1 cut(s) 1636
BssECI CCNNGG 6 cut(s) 732, 744, 972, 982, 1257, 1258
BssMI GATC 9 cut(s) 210, 276, 812, 1129, 1146, 1364, 1672, 2093, 2367
BssNI GRCGYC 2 cut(s) 353, 392
BssT1I CCWWGG 3 cut(s) 732, 744, 982
Bst2UI CCWGG 4 cut(s) 659, 893, 973, 1259
Bst4CI ACNGT 9 cut(s) 202, 426, 829, 1208, 1636, 2524, 2629, 2737, 2762
Bst6I CTCTTC 5 cut(s) 930, 1310, 1520, 2255, 2827
BstACI GRCGYC 2 cut(s) 353, 392
BstAUI TGTACA 1 cut(s) 1636
BstBAI YACGTR 2 cut(s) 725, 2897
BstBI TTCGAA 1 cut(s) 2236
BstC8I GCNNGC 7 cut(s) 170, 226, 804, 808, 1779, 2070, 2601
BstDSI CCRYGG 1 cut(s) 744
BstFNI CGCG 2 cut(s) 111, 2545
BstH2I RGCGCY 1 cut(s) 1423
BstHHI GCGC 2 cut(s) 1422, 2799
BstKTI GATC 9 cut(s) 213, 279, 815, 1132, 1149, 1367, 1675, 2096, 2370
BstMAI GTCTC 6 cut(s) 12, 761, 1258, 1578, 2762, 2915
BstMBI GATC 9 cut(s) 210, 276, 812, 1129, 1146, 1364, 1672, 2093, 2367
BstMCI CGRYCG 1 cut(s) 286
BstMWI GCNNNNNNNGC 7 cut(s) 368, 562, 571, 1769, 1778, 2616, 2965
BstNI CCWGG 4 cut(s) 659, 893, 973, 1259
BstNSI RCATGY 1 cut(s) 843
BstSCI CCNGG 6 cut(s) 129, 428, 657, 891, 971, 1257
BstSFI CTRYAG 3 cut(s) 808, 2225, 2925
BstSLI GKGCMC 1 cut(s) 170
BstUI CGCG 2 cut(s) 111, 2545
BstV1I GCAGC 7 cut(s) 394, 502, 1091, 1554, 1639, 2239, 2939
BstV2I GAAGAC 6 cut(s) 144, 291, 974, 1988, 1994, 2951
BstX2I RGATCY 4 cut(s) 210, 1129, 1672, 2367
BstYI RGATCY 4 cut(s) 210, 1129, 1672, 2367
Bsu15I ATCGAT 1 cut(s) 1036
BsuI GTATCC 1 cut(s) 675
BsuRI GGCC 7 cut(s) 5, 168, 240, 731, 1053, 1490, 2610
BsuTUI ATCGAT 1 cut(s) 1036
BtgI CCRYGG 1 cut(s) 744
BtsIMutI CAGTG 6 cut(s) 844, 1221, 1524, 1621, 2634, 2733
BveI ACCTGC 4 cut(s) 150, 1077, 2359, 2847
Cac8I GCNNGC 7 cut(s) 170, 226, 804, 808, 1779, 2070, 2601
CaiI CAGNNNCTG 2 cut(s) 1396, 2351
CciI TCATGA 2 cut(s) 960, 2562
CfoI GCGC 2 cut(s) 1422, 2799
ClaI ATCGAT 1 cut(s) 1036
CpoI CGGWCCG 1 cut(s) 426
CseI GACGC 3 cut(s) 100, 381, 2534
Csp6I GTAC 6 cut(s) 825, 1280, 1637, 1643, 2169, 2763
CspI CGGWCCG 1 cut(s) 426
CviQI GTAC 6 cut(s) 825, 1280, 1637, 1643, 2169, 2763
DpnI GATC 9 cut(s) 212, 278, 814, 1131, 1148, 1366, 1674, 2095, 2369
DpnII GATC 9 cut(s) 210, 276, 812, 1129, 1146, 1364, 1672, 2093, 2367
DraI TTTAAA 1 cut(s) 2662
EaeI YGGCCR 1 cut(s) 1051
Eam1104I CTCTTC 5 cut(s) 930, 1310, 1520, 2255, 2827
EarI CTCTTC 5 cut(s) 930, 1310, 1520, 2255, 2827
EciI GGCGGA 1 cut(s) 1112
Ecl136II GAGCTC 4 cut(s) 234, 445, 1591, 2341
Eco130I CCWWGG 3 cut(s) 732, 744, 982
Eco24I GRGCYC 7 cut(s) 170, 236, 447, 502, 1412, 1593, 2343
Eco32I GATATC 1 cut(s) 1294
Eco47I GGWCC 4 cut(s) 187, 426, 454, 1514
Eco53kI GAGCTC 4 cut(s) 234, 445, 1591, 2341
Eco57I CTGAAG 5 cut(s) 323, 1779, 1835, 2468, 2960
EcoICRI GAGCTC 4 cut(s) 234, 445, 1591, 2341
EcoO109I RGGNCCY 2 cut(s) 729, 2609
EcoRI GAATTC 2 cut(s) 289, 2869
EcoRII CCWGG 4 cut(s) 657, 891, 971, 1257
EcoRV GATATC 1 cut(s) 1294
EcoT14I CCWWGG 3 cut(s) 732, 744, 982
EcoT22I ATGCAT 1 cut(s) 1959
EcoT38I GRGCYC 7 cut(s) 170, 236, 447, 502, 1412, 1593, 2343
ErhI CCWWGG 3 cut(s) 732, 744, 982
Esp3I CGTCTC 1 cut(s) 1578
FaqI GGGAC 4 cut(s) 50, 173, 666, 2818
FauI CCCGC 6 cut(s) 177, 270, 444, 1712, 2083, 2624
FauNDI CATATG 1 cut(s) 672
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 7 cut(s) 383, 516, 1080, 1568, 1653, 2228, 2928
FriOI GRGCYC 7 cut(s) 170, 236, 447, 502, 1412, 1593, 2343
Fsp4HI GCNGC 7 cut(s) 383, 516, 1080, 1568, 1653, 2228, 2928
FspBI CTAG 4 cut(s) 215, 1283, 2079, 2600
GlaI GCGC 2 cut(s) 1421, 2798
GluI GCNGC 7 cut(s) 383, 516, 1080, 1568, 1653, 2228, 2928
GsuI CTGGAG 3 cut(s) 581, 2625, 2828
HaeII RGCGCY 1 cut(s) 1423
HaeIII GGCC 7 cut(s) 5, 168, 240, 731, 1053, 1490, 2610
HapII CCGG 6 cut(s) 131, 229, 237, 286, 429, 712
HgaI GACGC 3 cut(s) 100, 381, 2534
HhaI GCGC 2 cut(s) 1422, 2799
Hin1I GRCGYC 2 cut(s) 353, 392
Hin6I GCGC 2 cut(s) 1420, 2797
HinP1I GCGC 2 cut(s) 1420, 2797
HincII GTYRAC 5 cut(s) 1351, 1623, 1828, 2520, 2730
HindII GTYRAC 5 cut(s) 1351, 1623, 1828, 2520, 2730
HindIII AAGCTT 2 cut(s) 615, 2568
HpaII CCGG 6 cut(s) 131, 229, 237, 286, 429, 712
HphI GGTGA 2 cut(s) 244, 271
Hpy166II GTNNAC 9 cut(s) 127, 205, 422, 1351, 1623, 1828, 2520, 2527, 2730
Hpy8I GTNNAC 9 cut(s) 127, 205, 422, 1351, 1623, 1828, 2520, 2527, 2730
Hpy99I CGWCG 3 cut(s) 116, 397, 682
HpyCH4III ACNGT 9 cut(s) 202, 426, 829, 1208, 1636, 2524, 2629, 2737, 2762
HpyCH4IV ACGT 3 cut(s) 353, 724, 2896
HpyF10VI GCNNNNNNNGC 7 cut(s) 368, 562, 571, 1769, 1778, 2616, 2965
HpySE526I ACGT 3 cut(s) 353, 724, 2896
Hsp92I GRCGYC 2 cut(s) 353, 392
HspAI GCGC 2 cut(s) 1420, 2797
Kpn2I TCCGGA 1 cut(s) 711
Kzo9I GATC 9 cut(s) 210, 276, 812, 1129, 1146, 1364, 1672, 2093, 2367
LguI GCTCTTC 2 cut(s) 930, 2827
Lsp1109I GCAGC 7 cut(s) 394, 502, 1091, 1554, 1639, 2239, 2939
LweI GCATC 7 cut(s) 108, 181, 1102, 1230, 1731, 1966, 2443
MaeI CTAG 4 cut(s) 215, 1283, 2079, 2600
MaeII ACGT 3 cut(s) 353, 724, 2896
MaeIII GTNAC 4 cut(s) 333, 567, 1042, 2130
MalI GATC 9 cut(s) 212, 278, 814, 1131, 1148, 1366, 1674, 2095, 2369
MbiI CCGCTC 2 cut(s) 250, 698
MboI GATC 9 cut(s) 210, 276, 812, 1129, 1146, 1364, 1672, 2093, 2367
MflI RGATCY 4 cut(s) 210, 1129, 1672, 2367
MhlI GDGCHC 7 cut(s) 170, 236, 447, 502, 1412, 1593, 2343
MlsI TGGCCA 1 cut(s) 1053
MluI ACGCGT 2 cut(s) 109, 2543
MluNI TGGCCA 1 cut(s) 1053
MlyI GAGTC 6 cut(s) 72, 176, 648, 1244, 1618, 2797
Mox20I TGGCCA 1 cut(s) 1053
Mph1103I ATGCAT 1 cut(s) 1959
MroI TCCGGA 1 cut(s) 711
MscI TGGCCA 1 cut(s) 1053
MseI TTAA 4 cut(s) 2217, 2661, 2714, 2739
MslI CAYNNNNRTG 2 cut(s) 1038, 2913
Msp20I TGGCCA 1 cut(s) 1053
MspA1I CMGCKG 2 cut(s) 2090, 2708
MspI CCGG 6 cut(s) 131, 229, 237, 286, 429, 712
MspR9I CCNGG 6 cut(s) 131, 430, 659, 893, 973, 1259
Mva1269I GAATGC 4 cut(s) 1171, 1570, 1880, 1931
MvaI CCWGG 4 cut(s) 659, 893, 973, 1259
MvnI CGCG 2 cut(s) 111, 2545
MwoI GCNNNNNNNGC 7 cut(s) 368, 562, 571, 1769, 1778, 2616, 2965
NciI CCSGG 2 cut(s) 131, 430
NcoI CCATGG 1 cut(s) 744
NdeI CATATG 1 cut(s) 672
NdeII GATC 9 cut(s) 210, 276, 812, 1129, 1146, 1364, 1672, 2093, 2367
NheI GCTAGC 1 cut(s) 2599
NmuCI GTSAC 2 cut(s) 333, 2130
NsiI ATGCAT 1 cut(s) 1959
NspI RCATGY 1 cut(s) 843
NspV TTCGAA 1 cut(s) 2236
PagI TCATGA 2 cut(s) 960, 2562
PaqCI CACCTGC 2 cut(s) 2359, 2847
PasI CCCWGGG 1 cut(s) 1258
PciSI GCTCTTC 2 cut(s) 930, 2827
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 359
PctI GAATGC 4 cut(s) 1171, 1570, 1880, 1931
PfoI TCCNGGA 1 cut(s) 891
PkrI GCNGC 7 cut(s) 384, 517, 1081, 1569, 1654, 2229, 2929
PleI GAGTC 6 cut(s) 71, 176, 648, 1243, 1618, 2797
PpsI GAGTC 6 cut(s) 71, 176, 648, 1243, 1618, 2797
Ppu21I YACGTR 2 cut(s) 725, 2897
PshBI ATTAAT 1 cut(s) 2217
Psp124BI GAGCTC 4 cut(s) 236, 447, 1593, 2343
Psp6I CCWGG 4 cut(s) 657, 891, 971, 1257
PspGI CCWGG 4 cut(s) 657, 891, 971, 1257
PspOMI GGGCCC 1 cut(s) 166
PsrI GAACNNNNNNTAC 2 cut(s) 2032, 2064
PstI CTGCAG 3 cut(s) 812, 2229, 2929
PstNI CAGNNNCTG 2 cut(s) 1396, 2351
PsuI RGATCY 4 cut(s) 210, 1129, 1672, 2367
PvuII CAGCTG 1 cut(s) 2708
RsaI GTAC 6 cut(s) 826, 1281, 1638, 1644, 2170, 2764
RsaNI GTAC 6 cut(s) 825, 1280, 1637, 1643, 2169, 2763
RseI CAYNNNNRTG 2 cut(s) 1038, 2913
Rsr2I CGGWCCG 1 cut(s) 426
RsrII CGGWCCG 1 cut(s) 426
SacI GAGCTC 4 cut(s) 236, 447, 1593, 2343
SapI GCTCTTC 2 cut(s) 930, 2827
SaqAI TTAA 4 cut(s) 2217, 2661, 2714, 2739
SatI GCNGC 7 cut(s) 383, 516, 1080, 1568, 1653, 2228, 2928
Sau3AI GATC 9 cut(s) 210, 276, 812, 1129, 1146, 1364, 1672, 2093, 2367
ScaI AGTACT 2 cut(s) 1281, 1644
SchI GAGTC 6 cut(s) 72, 176, 648, 1244, 1618, 2797
ScrFI CCNGG 6 cut(s) 131, 430, 659, 893, 973, 1259
SduI GDGCHC 7 cut(s) 170, 236, 447, 502, 1412, 1593, 2343
SfaNI GCATC 7 cut(s) 108, 181, 1102, 1230, 1731, 1966, 2443
SfcI CTRYAG 3 cut(s) 808, 2225, 2925
SfuI TTCGAA 1 cut(s) 2236
SinI GGWCC 4 cut(s) 187, 426, 454, 1514
SmiMI CAYNNNNRTG 2 cut(s) 1038, 2913
SmlI CTYRAG 2 cut(s) 1592, 2492
SmoI CTYRAG 2 cut(s) 1592, 2492
SpeI ACTAGT 1 cut(s) 1282
SspI AATATT 1 cut(s) 1231
SspMI CTAG 4 cut(s) 215, 1283, 2079, 2600
SstI GAGCTC 4 cut(s) 236, 447, 1593, 2343
StyD4I CCNGG 6 cut(s) 129, 428, 657, 891, 971, 1257
StyI CCWWGG 3 cut(s) 732, 744, 982
TaaI ACNGT 9 cut(s) 202, 426, 829, 1208, 1636, 2524, 2629, 2737, 2762
TaiI ACGT 3 cut(s) 356, 727, 2899
TaqI TCGA 5 cut(s) 1036, 1238, 1692, 2018, 2236
TaqII GACCGA 1 cut(s) 494
TatI WGTACW 4 cut(s) 1279, 1636, 1642, 2168
Tru1I TTAA 4 cut(s) 2217, 2661, 2714, 2739
Tru9I TTAA 4 cut(s) 2217, 2661, 2714, 2739
TscAI CASTG 6 cut(s) 851, 1228, 1524, 1621, 2634, 2740
TseFI GTSAC 2 cut(s) 333, 2130
TseI GCWGC 7 cut(s) 382, 515, 1079, 1567, 1652, 2227, 2927
Tsp45I GTSAC 2 cut(s) 333, 2130
TspDTI ATGAA 9 cut(s) 627, 930, 977, 1022, 1932, 2044, 2093, 2427, 2579
TspGWI ACGGA 3 cut(s) 852, 1450, 2570
TspRI CASTG 6 cut(s) 851, 1228, 1524, 1621, 2634, 2740
VpaK11BI GGWCC 4 cut(s) 187, 426, 454, 1514
VspI ATTAAT 1 cut(s) 2217
XapI RAATTY 6 cut(s) 289, 631, 996, 2099, 2663, 2869
XceI RCATGY 1 cut(s) 843
XcmI CCANNNNNNNNNTGG 2 cut(s) 851, 1090
XmiI GTMKAC 1 cut(s) 204
XspI CTAG 4 cut(s) 215, 1283, 2079, 2600
ZraI GACGTC 1 cut(s) 354
ZrmI AGTACT 2 cut(s) 1281, 1644
Zsp2I ATGCAT 1 cut(s) 1959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.