Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005113

Physical Location & Seq

Genomic Coordinates Reverse (-)

16812636 .. 16814034

Gene Structure 1399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1209500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGAAGTATAAAAGTGTCGTGACACCAATAGTTGAGAGGCATCTGCTAGATATTCTTGAAAAAGTTGCCATAGATGACGTACTGGTGGTTCTGTACGTCGCCAACATGTGCGGCAAACCGTGCGAGAGATTGGCGGGGAGGTGCATTGAGATGATAGTGAAGTCCGATGCCAATGTTGTAACTCTGGAGAAAGCCCTGCCACAACACACTGTGAAGCAGATCACCGATACCAGGCTTGCATTCGGCTTGGACAGCCCTCAGCAGTGCTCCTCTAGTGCTAGTACTAGTCATTTCCCAGATAAACACACCAAGAGGATACACCGGGCTTTGGATTCGGATGATATCGAGTTGGTGCGAATGCTGCTGAAAGAAGGGCATACCAATCTTGACGATGCCTTTGCGCTGCACTATGCTGTGGCGTACTGTGATGCAAAGACCACAACGGATCTGCTTGATCTTGGAATCGCAGATGTTAATTGTAGGAATCCGAGGGGGTATACTGTGCTTCCTGTTGCGGCGATGAGGAAGGAGCCTAAGATCATTGTGTCCCTTCTCACGAAGGGTGCTCGCCCTTCGGATCTTACGCTGGATTGGAGGAAAGCGGTGCAGATCACTAAGCGGCTTACCCGGGCTGCAGTTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001666 GO:0002376 GO:0002682 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009627 GO:0009628 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010033 GO:0010112 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031348 GO:0032101 GO:0032870 GO:0035690 GO:0036293 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050776 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080027 GO:0080090 GO:0080134 GO:0098542 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 BTB DUF3420 NPR1_like_C

Protein Analysis

215

Amino Acids

23.84

Weight (kDa)

8.7

Isoelectric Point (pI)

27.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3420	PF11900	60 - 107	1.3e-08	Domain of unknown function (DUF3420)
Ank_2	PF12796	106 - 191	2.3e-06	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64280 AT4G26120 AT4G26120
fragaria_vesca	FvH4_1g07810
malus_domestica	MD02G1082100.v1.1 MD15G1209500.v1.1
prunus_persica	Prupe.7G206800_v2.0.a1 Prupe.7G206800_v2.0.a1 Prupe.7G206800_v2.0.a1
pyrus_communis	pycom02g06500
rosa_chinensis	RchiOBHm_Chr2g0093681
rosa_laevigata	RLG00000016428 RLG00000026474
rosa_multiflora	Rmu_sc0001465.1_g000015 Rmu_sc0005268.1_g000003
rosa_roxburghii	Rroxscaffold_2G00147900
rosa_rugosa	Rorug02G0038800 Rorug02G0038900 Rorug05G0356700
rosa_samantha	Rh2AG085200 Rh2AG085300 Rh2BG085700 Rh2CG088000 Rh2CG088100 Rh2DG083500 Rh3AG094800 Rh3CG099100 Rh3DG098500
rosa_wichuraiana	Rw0G013890 Rw3G008160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	497
AciI	CCGC	5 cut(s)	111, 134, 515, 602, 619
AclWI	GGATC	2 cut(s)	453, 585
AdeI	CACNNNGTG	1 cut(s)	211
AfaI	GTAC	4 cut(s)	81, 95, 283, 422
AfiI	CCNNNNNNNGG	2 cut(s)	231, 328
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	1 cut(s)	59
AhlI	ACTAGT	1 cut(s)	284
AjnI	CCWGG	1 cut(s)	230
Alw21I	GWGCWC	2 cut(s)	269, 568
AlwI	GGATC	2 cut(s)	453, 585
Ama87I	CYCGRG	1 cut(s)	627
ApeKI	GCWGC	3 cut(s)	361, 403, 632
ArsI	GACNNNNNNTTYG	2 cut(s)	380, 412
AspLEI	GCGC	1 cut(s)	403
AsuC2I	CCSGG	3 cut(s)	323, 628, 629
AsuHPI	GGTGA	1 cut(s)	214
AvaI	CYCGRG	1 cut(s)	627
Bbv12I	GWGCWC	2 cut(s)	269, 568
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	3 cut(s)	348, 390, 619
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BciT130I	CCWGG	1 cut(s)	232
BciVI	GTATCC	1 cut(s)	309
BcnI	CCSGG	3 cut(s)	323, 628, 629
BcuI	ACTAGT	1 cut(s)	284
BfaI	CTAG	4 cut(s)	47, 273, 279, 285
BfmI	CTRYAG	1 cut(s)	633
BfuI	GTATCC	1 cut(s)	309
BisI	GCNGC	6 cut(s)	112, 362, 404, 516, 620, 633
BlsI	GCNGC	6 cut(s)	113, 363, 405, 517, 621, 634
BmcAI	AGTACT	1 cut(s)	283
Bme1390I	CCNGG	4 cut(s)	232, 323, 628, 629
BmeT110I	CYCGRG	1 cut(s)	627
BmiI	GGNNCC	1 cut(s)	531
BmrFI	CCNGG	4 cut(s)	232, 323, 628, 629
BmsI	GCATC	4 cut(s)	49, 157, 382, 418
BpmI	CTGGAG	1 cut(s)	206
Bpu10I	CCTNAGC	1 cut(s)	258
BpuMI	CCSGG	3 cut(s)	323, 628, 629
BsaJI	CCNNGG	2 cut(s)	488, 627
Bsc4I	CCNNNNNNNGG	2 cut(s)	231, 328
Bse1I	ACTGG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	2 cut(s)	488, 627
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	2 cut(s)	231, 328
BseMII	CTCAG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	87
BseRI	GAGGAG	1 cut(s)	259
BseXI	GCAGC	3 cut(s)	348, 390, 619
BsgI	GTGCAG	2 cut(s)	389, 626
BsiHKAI	GWGCWC	2 cut(s)	269, 568
BsiHKCI	CYCGRG	1 cut(s)	627
BsiSI	CCGG	2 cut(s)	322, 628
BslFI	GGGAC	1 cut(s)	532
BslI	CCNNNNNNNGG	2 cut(s)	231, 328
BsmFI	GGGAC	1 cut(s)	532
BsmI	GAATGC	2 cut(s)	239, 363
BsoBI	CYCGRG	1 cut(s)	627
Bsp1286I	GDGCHC	2 cut(s)	269, 568
Bsp143I	GATC	6 cut(s)	219, 445, 454, 537, 577, 609
BspACI	CCGC	5 cut(s)	111, 134, 515, 602, 619
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	531
BspMAI	CTGCAG	1 cut(s)	637
BspPI	GGATC	2 cut(s)	453, 585
BsrI	ACTGG	1 cut(s)	87
BssECI	CCNNGG	2 cut(s)	488, 627
BssMI	GATC	6 cut(s)	219, 445, 454, 537, 577, 609
BssNAI	GTATAC	1 cut(s)	498
Bst1107I	GTATAC	1 cut(s)	498
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	4 cut(s)	120, 211, 425, 502
BstAPI	GCANNNNNTGC	1 cut(s)	120
BstC8I	GCNNGC	2 cut(s)	237, 568
BstDEI	CTNAG	3 cut(s)	258, 534, 615
BstF5I	GGATG	1 cut(s)	343
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	6 cut(s)	222, 448, 457, 540, 580, 612
BstMBI	GATC	6 cut(s)	219, 445, 454, 537, 577, 609
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 252, 361
BstNI	CCWGG	1 cut(s)	232
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	4 cut(s)	230, 321, 626, 627
BstSFI	CTRYAG	1 cut(s)	633
BstV1I	GCAGC	3 cut(s)	348, 390, 619
BstX2I	RGATCY	2 cut(s)	445, 577
BstYI	RGATCY	2 cut(s)	445, 577
BstZ17I	GTATAC	1 cut(s)	498
BsuI	GTATCC	1 cut(s)	309
BtgZI	GCGATG	1 cut(s)	533
BtsCI	GGATG	1 cut(s)	343
BtsI	GCAGTG	1 cut(s)	269
BtsIMutI	CAGTG	2 cut(s)	207, 269
Cac8I	GCNNGC	2 cut(s)	237, 568
CfoI	GCGC	1 cut(s)	403
Cfr9I	CCCGGG	1 cut(s)	627
Csp6I	GTAC	4 cut(s)	80, 94, 282, 421
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	8 cut(s)	194, 235, 246, 255, 326, 532, 622, 632
CviKI_1	RGCY	8 cut(s)	194, 235, 246, 255, 326, 532, 622, 632
CviQI	GTAC	4 cut(s)	80, 94, 282, 421
DdeI	CTNAG	3 cut(s)	258, 534, 615
DpnI	GATC	6 cut(s)	221, 447, 456, 539, 579, 611
DpnII	GATC	6 cut(s)	219, 445, 454, 537, 577, 609
DraIII	CACNNNGTG	1 cut(s)	211
Eco32I	GATATC	1 cut(s)	343
Eco88I	CYCGRG	1 cut(s)	627
EcoRII	CCWGG	1 cut(s)	230
EcoRV	GATATC	1 cut(s)	343
FaeI	CATG	1 cut(s)	109
FaiI	YATR	6 cut(s)	9, 71, 107, 378, 411, 498
FaqI	GGGAC	1 cut(s)	532
FatI	CATG	1 cut(s)	105
FauI	CCCGC	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	497
Fnu4HI	GCNGC	6 cut(s)	112, 362, 404, 516, 620, 633
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	6 cut(s)	112, 362, 404, 516, 620, 633
FspBI	CTAG	4 cut(s)	47, 273, 279, 285
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	6 cut(s)	112, 362, 404, 516, 620, 633
GsuI	CTGGAG	1 cut(s)	206
HapII	CCGG	2 cut(s)	322, 628
HhaI	GCGC	1 cut(s)	403
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HinfI	GANTC	3 cut(s)	332, 462, 484
HpaII	CCGG	2 cut(s)	322, 628
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	1 cut(s)	498
Hpy188I	TCNGA	4 cut(s)	166, 337, 489, 577
Hpy188III	TCNNGA	5 cut(s)	19, 56, 185, 386, 556
Hpy8I	GTNNAC	1 cut(s)	498
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	5 cut(s)	365, 520, 553, 560, 582
HpyCH4III	ACNGT	4 cut(s)	120, 211, 425, 502
HpyCH4IV	ACGT	2 cut(s)	78, 96
HpyCH4V	TGCA	6 cut(s)	144, 239, 406, 431, 607, 635
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 252, 361
HpyF3I	CTNAG	3 cut(s)	258, 534, 615
HpySE526I	ACGT	2 cut(s)	78, 96
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	1 cut(s)	401
Kzo9I	GATC	6 cut(s)	219, 445, 454, 537, 577, 609
LmnI	GCTCC	2 cut(s)	272, 529
Lsp1109I	GCAGC	3 cut(s)	348, 390, 619
LweI	GCATC	4 cut(s)	49, 157, 382, 418
MaeI	CTAG	4 cut(s)	47, 273, 279, 285
MaeII	ACGT	2 cut(s)	78, 96
MaeIII	GTNAC	2 cut(s)	19, 178
MalI	GATC	6 cut(s)	221, 447, 456, 539, 579, 611
MboI	GATC	6 cut(s)	219, 445, 454, 537, 577, 609
MflI	RGATCY	2 cut(s)	445, 577
MhlI	GDGCHC	2 cut(s)	269, 568
MluCI	AATT	1 cut(s)	475
MnlI	CCTC	8 cut(s)	30, 132, 267, 280, 306, 483, 516, 588
MseI	TTAA	1 cut(s)	474
MslI	CAYNNNNRTG	1 cut(s)	149
MspI	CCGG	2 cut(s)	322, 628
MspR9I	CCNGG	4 cut(s)	232, 323, 628, 629
Mva1269I	GAATGC	2 cut(s)	239, 363
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	3 cut(s)	120, 252, 361
NciI	CCSGG	3 cut(s)	323, 628, 629
NdeII	GATC	6 cut(s)	219, 445, 454, 537, 577, 609
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	1 cut(s)	531
NmuCI	GTSAC	1 cut(s)	19
NspI	RCATGY	1 cut(s)	109
PciI	ACATGT	1 cut(s)	105
PctI	GAATGC	2 cut(s)	239, 363
PfeI	GAWTC	3 cut(s)	332, 462, 484
PkrI	GCNGC	6 cut(s)	113, 363, 405, 517, 621, 634
PscI	ACATGT	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	531
PsrI	GAACNNNNNNTAC	2 cut(s)	72, 104
PstI	CTGCAG	1 cut(s)	637
PsuI	RGATCY	2 cut(s)	445, 577
RsaI	GTAC	4 cut(s)	81, 95, 283, 422
RsaNI	GTAC	4 cut(s)	80, 94, 282, 421
RseI	CAYNNNNRTG	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	6 cut(s)	112, 362, 404, 516, 620, 633
Sau3AI	GATC	6 cut(s)	219, 445, 454, 537, 577, 609
ScaI	AGTACT	1 cut(s)	283
ScrFI	CCNGG	4 cut(s)	232, 323, 628, 629
SduI	GDGCHC	2 cut(s)	269, 568
SetI	ASST	3 cut(s)	81, 99, 143
SfaNI	GCATC	4 cut(s)	49, 157, 382, 418
SfcI	CTRYAG	1 cut(s)	633
SmaI	CCCGGG	1 cut(s)	629
SmiMI	CAYNNNNRTG	1 cut(s)	149
SpeI	ACTAGT	1 cut(s)	284
Sse9I	AATT	1 cut(s)	475
SsiI	CCGC	5 cut(s)	111, 134, 515, 602, 619
SspMI	CTAG	4 cut(s)	47, 273, 279, 285
StyD4I	CCNGG	4 cut(s)	230, 321, 626, 627
TaaI	ACNGT	4 cut(s)	120, 211, 425, 502
TaiI	ACGT	2 cut(s)	81, 99
TaqI	TCGA	1 cut(s)	345
TasI	AATT	1 cut(s)	475
TatI	WGTACW	1 cut(s)	281
TauI	GCSGC	3 cut(s)	114, 518, 622
TfiI	GAWTC	3 cut(s)	332, 462, 484
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TscAI	CASTG	2 cut(s)	214, 269
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	3 cut(s)	361, 403, 632
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	458
TspMI	CCCGGG	1 cut(s)	627
TspRI	CASTG	2 cut(s)	214, 269
XceI	RCATGY	1 cut(s)	109
XmaI	CCCGGG	1 cut(s)	627
XmiI	GTMKAC	1 cut(s)	497
XspI	CTAG	4 cut(s)	47, 273, 279, 285
ZrmI	AGTACT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.