Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005113

Physical Location & Seq

Genomic Coordinates Reverse (-)

7245039 .. 7245323

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG088100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGAATATACAAAAACTTGTTTTTCGGATTCCAACGAGGTTGTTAGCAGTAGCATTAGTATAGCTCACCACCACTCTCCCTCTTCTTCTTCACCTCCTGCTGATATCACATCCCTCAAGCACCTCTCCGATAATCTCGAACTGATAGTTGACTCGACGCCAAAATCGTCGTCGGCAACGGCCGGGAAGTCCCCGTCCACCGCTGCATCCTCGCCGCGAGGAGCTCGTTTTTCAAGAACGTCTTCTCAGCTAAAGAAGGCAGTAGCTCTATTAGGTTTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001666 GO:0002376 GO:0002682 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009627 GO:0009628 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010033 GO:0010112 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031348 GO:0032101 GO:0032870 GO:0035690 GO:0036293 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050776 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080027 GO:0080090 GO:0080134 GO:0098542 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 BTB DUF3420 NPR1_like_C

Protein Analysis

94

Amino Acids

9.76

Weight (kDa)

8.93

Isoelectric Point (pI)

52.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64280 AT4G26120 AT4G26120
fragaria_vesca	FvH4_1g07810
malus_domestica	MD02G1082100.v1.1 MD15G1209500.v1.1
prunus_persica	Prupe.7G206800_v2.0.a1 Prupe.7G206800_v2.0.a1 Prupe.7G206800_v2.0.a1
pyrus_communis	pycom02g06500
rosa_chinensis	RchiOBHm_Chr2g0093681
rosa_laevigata	RLG00000016428 RLG00000026474
rosa_multiflora	Rmu_sc0001465.1_g000015 Rmu_sc0005268.1_g000003
rosa_roxburghii	Rroxscaffold_2G00147900
rosa_rugosa	Rorug02G0038800 Rorug02G0038900 Rorug05G0356700
rosa_samantha	Rh2AG085200 Rh2AG085300 Rh2BG085700 Rh2CG088000 Rh2CG088100 Rh2DG083500 Rh3AG094800 Rh3CG099100 Rh3DG098500
rosa_wichuraiana	Rw0G013890 Rw3G008160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	217
AciI	CCGC	2 cut(s)	201, 215
AcoI	YGGCCR	1 cut(s)	180
AcyI	GRCGYC	1 cut(s)	158
AgsI	TTSAA	2 cut(s)	234, 280
AluBI	AGCT	4 cut(s)	65, 224, 250, 266
AluI	AGCT	4 cut(s)	65, 224, 250, 266
Alw21I	GWGCWC	1 cut(s)	226
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	1 cut(s)	203
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
Asp700I	GAANNNNTTC	1 cut(s)	241
AsuC2I	CCSGG	1 cut(s)	184
AsuHPI	GGTGA	2 cut(s)	59, 84
BanII	GRGCYC	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	190
BceAI	ACGGC	1 cut(s)	195
BcnI	CCSGG	1 cut(s)	184
BisI	GCNGC	2 cut(s)	204, 215
BlsI	GCNGC	2 cut(s)	205, 216
Bme1390I	CCNGG	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	215
BpiI	GAAGAC	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	101
BpuMI	CCSGG	1 cut(s)	184
BsaHI	GRCGYC	1 cut(s)	158
BseGI	GGATG	2 cut(s)	110, 206
BseMII	CTCAG	1 cut(s)	260
BseRI	GAGGAG	1 cut(s)	234
BseX3I	CGGCCG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	190
Bsh1236I	CGCG	1 cut(s)	217
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	1 cut(s)	182
BsiEI	CGRYCG	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	226
BspACI	CCGC	2 cut(s)	201, 215
BspANI	GGCC	1 cut(s)	182
BspCNI	CTCAG	1 cut(s)	259
BspFNI	CGCG	1 cut(s)	217
BssNI	GRCGYC	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	88
BstACI	GRCGYC	1 cut(s)	158
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	2 cut(s)	110, 206
BstFNI	CGCG	1 cut(s)	217
BstMCI	CGRYCG	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	182
BstUI	CGCG	1 cut(s)	217
BstV1I	GCAGC	1 cut(s)	190
BstV2I	GAAGAC	1 cut(s)	234
BstZI	CGGCCG	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	182
BtsCI	GGATG	2 cut(s)	110, 206
CseI	GACGC	1 cut(s)	166
CviJI	RGCY	5 cut(s)	65, 182, 224, 250, 266
CviKI_1	RGCY	5 cut(s)	65, 182, 224, 250, 266
DdeI	CTNAG	1 cut(s)	246
EaeI	YGGCCR	1 cut(s)	180
EagI	CGGCCG	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Ecl136II	GAGCTC	1 cut(s)	224
EclXI	CGGCCG	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	226
Eco32I	GATATC	1 cut(s)	106
Eco52I	CGGCCG	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	224
EcoRV	GATATC	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	226
FaiI	YATR	2 cut(s)	9, 62
FalI	AAGNNNNNCTT	2 cut(s)	226, 258
FaqI	GGGAC	1 cut(s)	175
Fnu4HI	GCNGC	2 cut(s)	204, 215
FokI	GGATG	2 cut(s)	97, 193
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	2 cut(s)	204, 215
GluI	GCNGC	2 cut(s)	204, 215
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	1 cut(s)	183
HgaI	GACGC	1 cut(s)	166
Hin1I	GRCGYC	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	2 cut(s)	29, 152
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	2 cut(s)	59, 84
Hpy166II	GTNNAC	2 cut(s)	151, 198
Hpy188I	TCNGA	2 cut(s)	28, 130
Hpy188III	TCNNGA	2 cut(s)	137, 234
Hpy8I	GTNNAC	2 cut(s)	151, 198
Hpy99I	CGWCG	3 cut(s)	160, 172, 175
HpyAV	CCTTC	1 cut(s)	250
HpyCH4IV	ACGT	1 cut(s)	239
HpyCH4V	TGCA	1 cut(s)	206
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	239
Hsp92I	GRCGYC	1 cut(s)	158
LmnI	GCTCC	1 cut(s)	221
LpnPI	CCDG	2 cut(s)	111, 196
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	1 cut(s)	215
MaeII	ACGT	1 cut(s)	239
MboII	GAAGA	4 cut(s)	75, 78, 81, 234
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	1 cut(s)	280
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	7 cut(s)	31, 91, 105, 125, 134, 212, 220
MroXI	GAANNNNTTC	1 cut(s)	241
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	184
MvnI	CGCG	1 cut(s)	217
NciI	CCSGG	1 cut(s)	184
PcsI	WCGNNNNNNNCGW	1 cut(s)	164
PdmI	GAANNNNTTC	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	205, 216
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Psp124BI	GAGCTC	1 cut(s)	226
SacI	GAGCTC	1 cut(s)	226
SatI	GCNGC	2 cut(s)	204, 215
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	184
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	9 cut(s)	42, 67, 97, 126, 226, 242, 252, 268, 277
SfaNI	GCATC	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	1 cut(s)	280
SsiI	CCGC	2 cut(s)	201, 215
SstI	GAGCTC	1 cut(s)	226
StyD4I	CCNGG	1 cut(s)	182
TaiI	ACGT	1 cut(s)	242
TaqI	TCGA	2 cut(s)	138, 155
TasI	AATT	1 cut(s)	280
TauI	GCSGC	1 cut(s)	217
TfiI	GAWTC	1 cut(s)	29
TseI	GCWGC	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.