Rorug02G0038900

Regulatory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005113
Physical Location & Seq
Reverse (-)
3025370 .. 3026179
810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0038900.1

Sequence Viewer

Length: 411 bp
ATGAAGATCTATATTGCCCCATCAAAGGCTTTGGTTCAGGAGAAGGTTCGTGATTGGACCCAGAGGTTTGGATCTTGGGGAGTAGTTTGCTTGGAGCTCACCGGAGATAATGAATCTTACAACACCAGGAGTTTACAGGCAGCAGACATTATTTTAATCACTCCTGAGGTGAGTGTAAAGAAATTTGATGCAGTATCGCTGTATCGCGTAAAGGATGGTGGATTGGGCTTTTTCAGCAATATAGCAGTTCTACTTATTGATGAAGTTCATCTGTTGAATGATCCTCGTGGAGCAGTTTTGGAAGCAATAGTTAGCAGAATAAAATTGCTTGCTCACAACCCTGAAATGAAGTCAAGCGCTCAGGCTCATGTTCGTTTTCTAGCTGTGTCTGCCACCATTCCAAATATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0001666 GO:0002376 GO:0002682 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009627 GO:0009628 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010033 GO:0010112 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031348 GO:0032101 GO:0032870 GO:0035690 GO:0036293 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050776 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080027 GO:0080090 GO:0080134 GO:0098542 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 BTB DUF3420 NPR1_like_C

Protein Analysis

136

Amino Acids

15.02

Weight (kDa)

7.89

Isoelectric Point (pI)

26.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 3 - 134 1e-15 DEAD/DEAH box helicase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 207
AclWI GGATC 2 cut(s) 79, 275
AcsI RAATTY 1 cut(s) 182
AfeI AGCGCT 1 cut(s) 358
AfiI CCNNNNNNNGG 1 cut(s) 25
AgsI TTSAA 1 cut(s) 277
AjnI CCWGG 1 cut(s) 125
AluBI AGCT 2 cut(s) 97, 383
AluI AGCT 2 cut(s) 97, 383
Alw21I GWGCWC 1 cut(s) 99
AlwI GGATC 2 cut(s) 79, 275
Aor51HI AGCGCT 1 cut(s) 358
ApeKI GCWGC 1 cut(s) 140
ApoI RAATTY 1 cut(s) 182
AspLEI GCGC 1 cut(s) 359
AspS9I GGNCC 1 cut(s) 57
AsuHPI GGTGA 2 cut(s) 91, 181
AvaII GGWCC 1 cut(s) 57
AxyI CCTNAGG 1 cut(s) 165
BanII GRGCYC 1 cut(s) 99
BauI CACGAG 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 152
BccI CCATC 2 cut(s) 28, 209
BciT130I CCWGG 1 cut(s) 127
BfaI CTAG 1 cut(s) 380
BfoI RGCGCY 1 cut(s) 360
BglII AGATCT 1 cut(s) 6
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 127
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 127
BmsI GCATC 1 cut(s) 178
Bpu10I CCTNAGC 1 cut(s) 360
BsaWI WCCGGW 1 cut(s) 101
Bsc4I CCNNNNNNNGG 1 cut(s) 25
Bse21I CCTNAGG 1 cut(s) 165
BseBI CCWGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 220
BseLI CCNNNNNNNGG 1 cut(s) 25
BseMII CTCAG 2 cut(s) 156, 374
BseXI GCAGC 1 cut(s) 152
Bsh1236I CGCG 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 99
BsiSI CCGG 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 3 cut(s) 6, 71, 280
BspCNI CTCAG 2 cut(s) 157, 373
BspFNI CGCG 1 cut(s) 207
BspLI GGNNCC 1 cut(s) 59
BspPI GGATC 2 cut(s) 79, 275
BssMI GATC 3 cut(s) 6, 71, 280
BssSI CACGAG 1 cut(s) 285
Bst2BI CACGAG 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 330
BstDEI CTNAG 2 cut(s) 165, 360
BstF5I GGATG 1 cut(s) 220
BstFNI CGCG 1 cut(s) 207
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 1 cut(s) 359
BstKTI GATC 3 cut(s) 9, 74, 283
BstMBI GATC 3 cut(s) 6, 71, 280
BstMWI GCNNNNNNNGC 2 cut(s) 234, 389
BstNI CCWGG 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 125
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 1 cut(s) 152
BstX2I RGATCY 2 cut(s) 6, 71
BstXI CCANNNNNNTGG 1 cut(s) 68
BstYI RGATCY 2 cut(s) 6, 71
Bsu36I CCTNAGG 1 cut(s) 165
BtsCI GGATG 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 330
CfoI GCGC 1 cut(s) 359
Cfr13I GGNCC 1 cut(s) 57
CviAII CATG 1 cut(s) 368
CviJI RGCY 5 cut(s) 29, 97, 228, 365, 383
CviKI_1 RGCY 5 cut(s) 29, 97, 228, 365, 383
DdeI CTNAG 2 cut(s) 165, 360
DpnI GATC 3 cut(s) 8, 73, 282
DpnII GATC 3 cut(s) 6, 71, 280
Ecl136II GAGCTC 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 57
Eco47III AGCGCT 1 cut(s) 358
Eco53kI GAGCTC 1 cut(s) 97
Eco81I CCTNAGG 1 cut(s) 165
EcoICRI GAGCTC 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 125
EcoT38I GRGCYC 1 cut(s) 99
FaeI CATG 1 cut(s) 371
FaiI YATR 3 cut(s) 12, 242, 369
FatI CATG 1 cut(s) 367
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 1 cut(s) 227
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 1 cut(s) 380
GlaI GCGC 1 cut(s) 358
GluI GCNGC 1 cut(s) 141
HaeII RGCGCY 1 cut(s) 360
HapII CCGG 1 cut(s) 102
HhaI GCGC 1 cut(s) 359
Hin1II CATG 1 cut(s) 371
Hin6I GCGC 1 cut(s) 357
HinP1I GCGC 1 cut(s) 357
HinfI GANTC 1 cut(s) 113
HpaII CCGG 1 cut(s) 102
HphI GGTGA 2 cut(s) 91, 181
Hpy166II GTNNAC 1 cut(s) 134
Hpy188III TCNNGA 3 cut(s) 38, 50, 164
Hpy8I GTNNAC 1 cut(s) 134
HpyAV CCTTC 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 234, 389
HpyF3I CTNAG 2 cut(s) 165, 360
Hsp92II CATG 1 cut(s) 371
HspAI GCGC 1 cut(s) 357
Kzo9I GATC 3 cut(s) 6, 71, 280
LmnI GCTCC 2 cut(s) 94, 290
LpnPI CCDG 9 cut(s) 23, 74, 112, 115, 122, 139, 177, 347, 354
Lsp1109I GCAGC 1 cut(s) 152
LweI GCATC 1 cut(s) 178
MaeI CTAG 1 cut(s) 380
MalI GATC 3 cut(s) 8, 73, 282
MboI GATC 3 cut(s) 6, 71, 280
MboII GAAGA 1 cut(s) 16
MflI RGATCY 2 cut(s) 6, 71
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 2 cut(s) 182, 323
MnlI CCTC 3 cut(s) 57, 160, 294
MseI TTAA 1 cut(s) 155
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 127
MvaI CCWGG 1 cut(s) 127
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 234, 389
NdeII GATC 3 cut(s) 6, 71, 280
NlaIII CATG 1 cut(s) 371
NlaIV GGNNCC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 1 cut(s) 142
Psp124BI GAGCTC 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 125
PspGI CCWGG 1 cut(s) 125
PspN4I GGNNCC 1 cut(s) 59
PspPI GGNCC 1 cut(s) 57
PsuI RGATCY 2 cut(s) 6, 71
SacI GAGCTC 1 cut(s) 99
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 3 cut(s) 6, 71, 280
Sau96I GGNCC 1 cut(s) 57
ScrFI CCNGG 1 cut(s) 127
SduI GDGCHC 1 cut(s) 99
SetI ASST 5 cut(s) 48, 68, 99, 171, 385
SfaNI GCATC 1 cut(s) 178
SinI GGWCC 1 cut(s) 57
Sse9I AATT 2 cut(s) 182, 323
SspI AATATT 1 cut(s) 406
SspMI CTAG 1 cut(s) 380
SstI GAGCTC 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 125
TasI AATT 2 cut(s) 182, 323
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TseI GCWGC 1 cut(s) 140
TspDTI ATGAA 5 cut(s) 17, 126, 257, 276, 362
VpaK11BI GGWCC 1 cut(s) 57
XapI RAATTY 1 cut(s) 182
XspI CTAG 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.