Rh2AG085300

Regulatory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0005113
Physical Location & Seq
Reverse (-)
7187180 .. 7187443
264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG085300.1

Sequence Viewer

Length: 264 bp
ATGGAATATACAAAAACTTGTTTTTCGGATTCCAACGAGGTTGTTAGCAGTAGCACAAGAGCTCACCACCACTCTCCCTCTTCTTCTTCACCTTCTGCTGATATCACATCCCTCAAGCACCTCTCCGATAATCTCGAGCTGATAGTTGACTCCTCGTACTTTGCCGACGCCAAAATCGTCGTCGGCAACGGCCGGGAGGTCCCCGTCCACCGCTGCATCCTCGCCGCGAGGAGCTCGTTTTTTCAAGAACGTCTTCTCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0001666 GO:0002376 GO:0002682 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009627 GO:0009628 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010033 GO:0010112 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031348 GO:0032101 GO:0032870 GO:0035690 GO:0036293 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050776 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080027 GO:0080090 GO:0080134 GO:0098542 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 BTB DUF3420 NPR1_like_C

Protein Analysis

87

Amino Acids

9.56

Weight (kDa)

6.16

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB PF00651 52 - 85 1.1e-07 BTB/POZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 227
AciI CCGC 2 cut(s) 211, 225
AcoI YGGCCR 1 cut(s) 190
AcyI GRCGYC 1 cut(s) 168
AfaI GTAC 1 cut(s) 158
AgsI TTSAA 1 cut(s) 245
AluBI AGCT 4 cut(s) 62, 139, 234, 261
AluI AGCT 4 cut(s) 62, 139, 234, 261
Alw21I GWGCWC 2 cut(s) 64, 236
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 1 cut(s) 213
ArsI GACNNNNNNTTYG 2 cut(s) 165, 197
Asp700I GAANNNNTTC 1 cut(s) 252
AspS9I GGNCC 1 cut(s) 199
AsuC2I CCSGG 1 cut(s) 194
AsuHPI GGTGA 2 cut(s) 56, 81
AvaI CYCGRG 1 cut(s) 134
AvaII GGWCC 1 cut(s) 199
BanII GRGCYC 2 cut(s) 64, 236
BbsI GAAGAC 1 cut(s) 245
Bbv12I GWGCWC 2 cut(s) 64, 236
BbvI GCAGC 1 cut(s) 200
BceAI ACGGC 1 cut(s) 205
BcnI CCSGG 1 cut(s) 194
BisI GCNGC 2 cut(s) 214, 225
BlsI GCNGC 2 cut(s) 215, 226
Bme1390I CCNGG 1 cut(s) 194
Bme18I GGWCC 1 cut(s) 199
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 1 cut(s) 194
BmsI GCATC 1 cut(s) 225
BpiI GAAGAC 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 98
BpuMI CCSGG 1 cut(s) 194
BsaHI GRCGYC 1 cut(s) 168
BseGI GGATG 2 cut(s) 107, 216
BseRI GAGGAG 2 cut(s) 142, 244
BseX3I CGGCCG 1 cut(s) 190
BseXI GCAGC 1 cut(s) 200
Bsh1236I CGCG 1 cut(s) 227
Bsh1285I CGRYCG 1 cut(s) 193
BshFI GGCC 1 cut(s) 192
BsiEI CGRYCG 1 cut(s) 193
BsiHKAI GWGCWC 2 cut(s) 64, 236
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 1 cut(s) 193
BslFI GGGAC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 1 cut(s) 192
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 2 cut(s) 64, 236
BspACI CCGC 2 cut(s) 211, 225
BspANI GGCC 1 cut(s) 192
BspFNI CGCG 1 cut(s) 227
BspLI GGNNCC 1 cut(s) 201
BssNI GRCGYC 1 cut(s) 168
Bst6I CTCTTC 1 cut(s) 85
BstACI GRCGYC 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 257
BstF5I GGATG 2 cut(s) 107, 216
BstFNI CGCG 1 cut(s) 227
BstMCI CGRYCG 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 192
BstUI CGCG 1 cut(s) 227
BstV1I GCAGC 1 cut(s) 200
BstV2I GAAGAC 1 cut(s) 245
BstZI CGGCCG 1 cut(s) 190
BsuRI GGCC 1 cut(s) 192
BtsCI GGATG 2 cut(s) 107, 216
Cfr13I GGNCC 1 cut(s) 199
CseI GACGC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 157
CviJI RGCY 5 cut(s) 62, 139, 192, 234, 261
CviKI_1 RGCY 5 cut(s) 62, 139, 192, 234, 261
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 1 cut(s) 257
EaeI YGGCCR 1 cut(s) 190
EagI CGGCCG 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 85
EarI CTCTTC 1 cut(s) 85
Ecl136II GAGCTC 2 cut(s) 62, 234
EclXI CGGCCG 1 cut(s) 190
Eco24I GRGCYC 2 cut(s) 64, 236
Eco32I GATATC 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 199
Eco52I CGGCCG 1 cut(s) 190
Eco53kI GAGCTC 2 cut(s) 62, 234
Eco88I CYCGRG 1 cut(s) 134
EcoICRI GAGCTC 2 cut(s) 62, 234
EcoO109I RGGNCCY 1 cut(s) 199
EcoRV GATATC 1 cut(s) 103
EcoT38I GRGCYC 2 cut(s) 64, 236
FaiI YATR 1 cut(s) 9
FalI AAGNNNNNCTT 1 cut(s) 237
FaqI GGGAC 1 cut(s) 185
Fnu4HI GCNGC 2 cut(s) 214, 225
FokI GGATG 2 cut(s) 94, 203
FriOI GRGCYC 2 cut(s) 64, 236
Fsp4HI GCNGC 2 cut(s) 214, 225
GluI GCNGC 2 cut(s) 214, 225
HaeIII GGCC 1 cut(s) 192
HapII CCGG 1 cut(s) 193
HgaI GACGC 1 cut(s) 176
Hin1I GRCGYC 1 cut(s) 168
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 2 cut(s) 29, 149
HpaII CCGG 1 cut(s) 193
HphI GGTGA 2 cut(s) 56, 81
Hpy166II GTNNAC 2 cut(s) 148, 208
Hpy188I TCNGA 2 cut(s) 28, 127
Hpy188III TCNNGA 2 cut(s) 134, 245
Hpy8I GTNNAC 2 cut(s) 148, 208
Hpy99I CGWCG 3 cut(s) 170, 182, 185
HpyAV CCTTC 1 cut(s) 102
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 1 cut(s) 216
HpyF3I CTNAG 1 cut(s) 257
HpySE526I ACGT 1 cut(s) 250
Hsp92I GRCGYC 1 cut(s) 168
LmnI GCTCC 1 cut(s) 231
LpnPI CCDG 1 cut(s) 206
Lsp1109I GCAGC 1 cut(s) 200
LweI GCATC 1 cut(s) 225
MaeII ACGT 1 cut(s) 250
MboII GAAGA 4 cut(s) 72, 75, 78, 245
MhlI GDGCHC 2 cut(s) 64, 236
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 8 cut(s) 31, 88, 122, 131, 163, 190, 222, 230
MroXI GAANNNNTTC 1 cut(s) 252
MspA1I CMGCKG 1 cut(s) 213
MspI CCGG 1 cut(s) 193
MspR9I CCNGG 1 cut(s) 194
MvnI CGCG 1 cut(s) 227
NciI CCSGG 1 cut(s) 194
NlaIV GGNNCC 1 cut(s) 201
PaeR7I CTCGAG 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 2 cut(s) 215, 226
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PpuMI RGGWCCY 1 cut(s) 199
Psp124BI GAGCTC 2 cut(s) 64, 236
Psp5II RGGWCCY 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 1 cut(s) 199
PspPPI RGGWCCY 1 cut(s) 199
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SacI GAGCTC 2 cut(s) 64, 236
SatI GCNGC 2 cut(s) 214, 225
Sau96I GGNCC 1 cut(s) 199
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 194
SduI GDGCHC 2 cut(s) 64, 236
SetI ASST 9 cut(s) 42, 64, 94, 123, 141, 201, 236, 253, 263
SfaNI GCATC 1 cut(s) 225
Sfr274I CTCGAG 1 cut(s) 134
SinI GGWCC 1 cut(s) 199
SlaI CTCGAG 1 cut(s) 134
SmlI CTYRAG 2 cut(s) 113, 134
SmoI CTYRAG 2 cut(s) 113, 134
SsiI CCGC 2 cut(s) 211, 225
SstI GAGCTC 2 cut(s) 64, 236
StyD4I CCNGG 1 cut(s) 192
TaiI ACGT 1 cut(s) 253
TaqI TCGA 1 cut(s) 135
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 1 cut(s) 29
TseI GCWGC 1 cut(s) 213
VpaK11BI GGWCC 1 cut(s) 199
XhoI CTCGAG 1 cut(s) 134
XmnI GAANNNNTTC 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.