Rh2BG085700

Regulatory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0005113
Physical Location & Seq
Reverse (-)
6678585 .. 6680605
2021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG085700.1

Sequence Viewer

Length: 1245 bp
ATGGAATATACAAAAACTTGTTTTTCGGATTCCAACGAGGTTGTTAGCAGTAGCATTAGTATAGCTCACCACCACTCTCCCTCTTCTTCTTCACCTCCTGCTGATATCACATCCCTCAAGCACCTCTCCGATAATCTCGAACTGATAGTTGACTCGACGCCAAAATCGTCGTCGGCAACGGCCGGGAAGTCCCCGTCCACCGCTGCATCCTCGCCGCGAGGAGCTCGTTTTTCAAGAACGTCTTCTCAGCTAAAGAAGGCAGTAGCTCTATTAGACGACTCTTGTGCTCATGTTGCTTGTCGTCCCGTCGTTGATTTCATGGTGGAGGTTCTCTATGCTTCTTCAACATCTCAAATCTCAGAACTGGTCACTCTTTACCAGAGGCATTTGCTTGATATTCTTGAAAACATAACCATAGATGATGTGTTGGTGGTTCTATATGTTGCGAATATCTGTGGTAAAGCTTGTGAGAGATTGGTGGGGAGATGTATTGAGATGATAGTGAAGTCTGATGTTGATATTGTCACCCTTGAGAAAGCATTGCCTCAAGGATCCGTGAAGCGAATCACAGATTCGAGGTTGGCTCTTGGTCTGGACAGTTCTCGGAGCAGTAATGCTGCGAGTAGCTTTCCGGATAAGCACACAAAGAGGATACACAGGGCTTTGGATTCTGATGATGTTGAGTTGGTTCGAATGCTGTTGAAAGAGGGGCATACGAATCTTGACGATGCGCATGCACTTCACTATGCTGTGGCATACTGTGATGCAAAGACCACAGCAGAGCTGCTTGATCTTGGAATTGCGGATGTGAATTGCAGGAACCTGAGGGGTTACACTGTGCTGCACCTTGCGGCGACCAGGAAGGAGCCTAAGATCATTGTGTCACTACTTACAAAGGGTGCTCGTCCCTCGGATGTTACATTGGATGGCAGGAAAGCTCTTCAGATCACTAAGCGTCTTACCAGAGCTGCGGATGATGAGTTCTTTCCTCGTTGTTCAGAAGTACTGAACAAGATCATGGATGGTGATGAAGTGTCACGGCTTACATACACGGGGAATGACACTCCAGAAATAAGGCTCTCAAAGAGAAAAAGGTACATGGAAATCCAAGAAGTACCAAGTAAGGCTTTTGATGAAGATAAACAGGAAATTGATCGTTCTGGAATGTCATCATCCTCATCTTCTACATCAGCACGAGTAGTAAGGCCTAAGCTCACTATCGATCAACATTCGAAACAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0001666 GO:0002376 GO:0002682 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009627 GO:0009628 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010033 GO:0010112 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031348 GO:0032101 GO:0032870 GO:0035690 GO:0036293 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050776 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080027 GO:0080090 GO:0080134 GO:0098542 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 BTB DUF3420 NPR1_like_C

Protein Analysis

414

Amino Acids

45.4

Weight (kDa)

6.89

Isoelectric Point (pI)

50.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3420 PF11900 171 - 219 4.6e-07 Domain of unknown function (DUF3420)
Ank_2 PF12796 218 - 304 2.3e-08 Ankyrin repeats (3 copies)
NPR1_like_C PF12313 327 - 396 5.6e-23 NPR1/NIM1 like defence protein C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 732
AccII CGCG 1 cut(s) 217
AccIII TCCGGA 1 cut(s) 631
AciI CCGC 5 cut(s) 201, 215, 803, 851, 971
AclWI GGATC 2 cut(s) 546, 559
AcoI YGGCCR 1 cut(s) 180
AcuI CTGAAG 1 cut(s) 926
AcyI GRCGYC 1 cut(s) 158
AfaI GTAC 3 cut(s) 1005, 1097, 1116
AgsI TTSAA 4 cut(s) 234, 345, 404, 703
AjnI CCWGG 1 cut(s) 857
AloI GAACNNNNNNTCC 2 cut(s) 965, 997
Alw21I GWGCWC 3 cut(s) 226, 289, 904
AlwI GGATC 2 cut(s) 546, 559
Aor13HI TCCGGA 1 cut(s) 631
AoxI GGCC 2 cut(s) 180, 1205
ApeKI GCWGC 5 cut(s) 203, 617, 784, 841, 968
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
Asp700I GAANNNNTTC 1 cut(s) 241
AspLEI GCGC 1 cut(s) 733
AsuC2I CCSGG 1 cut(s) 184
AsuHPI GGTGA 4 cut(s) 59, 84, 517, 1037
AsuII TTCGAA 2 cut(s) 691, 1232
AxyI CCTNAGG 1 cut(s) 824
BamHI GGATCC 1 cut(s) 551
BanII GRGCYC 1 cut(s) 226
BauI CACGAG 1 cut(s) 1194
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 3 cut(s) 226, 289, 904
BbvI GCAGC 5 cut(s) 190, 604, 771, 828, 955
BccI CCATC 2 cut(s) 920, 1016
BceAI ACGGC 2 cut(s) 195, 1055
BcgI CGANNNNNNTGC 4 cut(s) 266, 300, 716, 750
BciT130I CCWGG 1 cut(s) 859
BciVI GTATCC 1 cut(s) 645
BcnI CCSGG 1 cut(s) 184
BfuI GTATCC 1 cut(s) 645
BisI GCNGC 7 cut(s) 204, 215, 618, 785, 842, 852, 969
BlsI GCNGC 7 cut(s) 205, 216, 619, 786, 843, 853, 970
BmcAI AGTACT 1 cut(s) 1005
Bme1390I CCNGG 2 cut(s) 184, 859
BmiI GGNNCC 3 cut(s) 553, 821, 867
BmrFI CCNGG 2 cut(s) 184, 859
BmsI GCATC 3 cut(s) 215, 718, 754
BpiI GAAGAC 1 cut(s) 234
BplI GAGNNNNNCTC 2 cut(s) 568, 600
BpmI CTGGAG 1 cut(s) 1050
Bpu10I CCTNAGC 1 cut(s) 1209
Bpu14I TTCGAA 2 cut(s) 691, 1232
BpuEI CTTGAG 3 cut(s) 101, 531, 551
BpuMI CCSGG 1 cut(s) 184
Bsa29I ATCGAT 1 cut(s) 1221
BsaHI GRCGYC 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 909
BsaWI WCCGGW 1 cut(s) 631
Bse1I ACTGG 1 cut(s) 369
Bse21I CCTNAGG 1 cut(s) 824
Bse3DI GCAATG 1 cut(s) 539
BseAI TCCGGA 1 cut(s) 631
BseBI CCWGG 1 cut(s) 859
BseCI ATCGAT 1 cut(s) 1221
BseDI CCNNGG 1 cut(s) 909
BseGI GGATG 8 cut(s) 110, 206, 811, 919, 931, 979, 1027, 1172
BseMI GCAATG 1 cut(s) 539
BseMII CTCAG 3 cut(s) 260, 372, 815
BseNI ACTGG 1 cut(s) 369
BseRI GAGGAG 1 cut(s) 234
BseX3I CGGCCG 1 cut(s) 180
BseXI GCAGC 5 cut(s) 190, 604, 771, 828, 955
BsgI GTGCAG 1 cut(s) 827
Bsh1236I CGCG 1 cut(s) 217
Bsh1285I CGRYCG 1 cut(s) 183
BshFI GGCC 2 cut(s) 182, 1207
BshVI ATCGAT 1 cut(s) 1221
BsiEI CGRYCG 1 cut(s) 183
BsiHKAI GWGCWC 3 cut(s) 226, 289, 904
BsiSI CCGG 2 cut(s) 183, 632
BslFI GGGAC 3 cut(s) 175, 288, 891
BsmFI GGGAC 3 cut(s) 175, 288, 891
BsmI GAATGC 1 cut(s) 699
BsnI GGCC 2 cut(s) 182, 1207
Bsp119I TTCGAA 2 cut(s) 691, 1232
Bsp1286I GDGCHC 3 cut(s) 226, 289, 904
Bsp13I TCCGGA 1 cut(s) 631
Bsp143I GATC 7 cut(s) 551, 790, 873, 945, 1014, 1153, 1222
BspACI CCGC 5 cut(s) 201, 215, 803, 851, 971
BspANI GGCC 2 cut(s) 182, 1207
BspCNI CTCAG 3 cut(s) 259, 371, 816
BspDI ATCGAT 1 cut(s) 1221
BspEI TCCGGA 1 cut(s) 631
BspFNI CGCG 1 cut(s) 217
BspLI GGNNCC 3 cut(s) 553, 821, 867
BspPI GGATC 2 cut(s) 546, 559
BspQI GCTCTTC 1 cut(s) 945
BspT104I TTCGAA 2 cut(s) 691, 1232
BsrDI GCAATG 1 cut(s) 539
BsrI ACTGG 1 cut(s) 369
BssECI CCNNGG 1 cut(s) 909
BssMI GATC 7 cut(s) 551, 790, 873, 945, 1014, 1153, 1222
BssNI GRCGYC 1 cut(s) 158
BssSI CACGAG 1 cut(s) 1194
Bst2BI CACGAG 1 cut(s) 1194
Bst2UI CCWGG 1 cut(s) 859
Bst4CI ACNGT 3 cut(s) 599, 761, 838
Bst6I CTCTTC 2 cut(s) 88, 945
BstACI GRCGYC 1 cut(s) 158
BstBI TTCGAA 2 cut(s) 691, 1232
BstC8I GCNNGC 1 cut(s) 735
BstDEI CTNAG 6 cut(s) 246, 358, 824, 870, 951, 1209
BstF5I GGATG 8 cut(s) 110, 206, 811, 919, 931, 979, 1027, 1172
BstFNI CGCG 1 cut(s) 217
BstHHI GCGC 1 cut(s) 733
BstKTI GATC 7 cut(s) 554, 793, 876, 948, 1017, 1156, 1225
BstMBI GATC 7 cut(s) 551, 790, 873, 945, 1014, 1153, 1222
BstMCI CGRYCG 1 cut(s) 183
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstNI CCWGG 1 cut(s) 859
BstNSI RCATGY 1 cut(s) 737
BstSCI CCNGG 2 cut(s) 182, 857
BstUI CGCG 1 cut(s) 217
BstV1I GCAGC 5 cut(s) 190, 604, 771, 828, 955
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 1 cut(s) 551
BstYI RGATCY 1 cut(s) 551
BstZI CGGCCG 1 cut(s) 180
Bsu15I ATCGAT 1 cut(s) 1221
Bsu36I CCTNAGG 1 cut(s) 824
BsuI GTATCC 1 cut(s) 645
BsuRI GGCC 2 cut(s) 182, 1207
BsuTUI ATCGAT 1 cut(s) 1221
BtsCI GGATG 8 cut(s) 110, 206, 811, 919, 931, 979, 1027, 1172
BtsIMutI CAGTG 1 cut(s) 834
Cac8I GCNNGC 1 cut(s) 735
CfoI GCGC 1 cut(s) 733
ClaI ATCGAT 1 cut(s) 1221
CseI GACGC 2 cut(s) 166, 944
Csp6I GTAC 3 cut(s) 1004, 1096, 1115
CviAII CATG 5 cut(s) 290, 319, 734, 1018, 1099
CviQI GTAC 3 cut(s) 1004, 1096, 1115
DdeI CTNAG 6 cut(s) 246, 358, 824, 870, 951, 1209
DpnI GATC 7 cut(s) 553, 792, 875, 947, 1016, 1155, 1224
DpnII GATC 7 cut(s) 551, 790, 873, 945, 1014, 1153, 1222
EaeI YGGCCR 1 cut(s) 180
EagI CGGCCG 1 cut(s) 180
Eam1104I CTCTTC 2 cut(s) 88, 945
EarI CTCTTC 2 cut(s) 88, 945
Ecl136II GAGCTC 1 cut(s) 224
EclXI CGGCCG 1 cut(s) 180
Eco147I AGGCCT 1 cut(s) 1207
Eco24I GRGCYC 1 cut(s) 226
Eco32I GATATC 1 cut(s) 106
Eco52I CGGCCG 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 926
Eco81I CCTNAGG 1 cut(s) 824
EcoICRI GAGCTC 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 857
EcoRV GATATC 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 226
FaeI CATG 5 cut(s) 293, 322, 737, 1021, 1102
FalI AAGNNNNNCTT 4 cut(s) 226, 258, 1111, 1143
FaqI GGGAC 3 cut(s) 175, 288, 891
FatI CATG 5 cut(s) 289, 318, 733, 1017, 1098
Fnu4HI GCNGC 7 cut(s) 204, 215, 618, 785, 842, 852, 969
FokI GGATG 8 cut(s) 97, 193, 818, 926, 938, 986, 1034, 1159
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 7 cut(s) 204, 215, 618, 785, 842, 852, 969
FspAI RTGCGCAY 1 cut(s) 732
FspI TGCGCA 1 cut(s) 732
GlaI GCGC 1 cut(s) 732
GluI GCNGC 7 cut(s) 204, 215, 618, 785, 842, 852, 969
GsuI CTGGAG 1 cut(s) 1050
HaeIII GGCC 2 cut(s) 182, 1207
HapII CCGG 2 cut(s) 183, 632
HgaI GACGC 2 cut(s) 166, 944
HhaI GCGC 1 cut(s) 733
Hin1I GRCGYC 1 cut(s) 158
Hin1II CATG 5 cut(s) 293, 322, 737, 1021, 1102
Hin6I GCGC 1 cut(s) 731
HinP1I GCGC 1 cut(s) 731
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HindIII AAGCTT 1 cut(s) 462
HinfI GANTC 7 cut(s) 29, 152, 278, 564, 572, 668, 718
HpaII CCGG 2 cut(s) 183, 632
HphI GGTGA 4 cut(s) 59, 84, 517, 1037
Hpy166II GTNNAC 2 cut(s) 151, 198
Hpy188I TCNGA 9 cut(s) 28, 130, 361, 511, 606, 673, 913, 945, 1000
Hpy188III TCNNGA 8 cut(s) 137, 234, 401, 593, 632, 722, 1067, 1161
Hpy8I GTNNAC 2 cut(s) 151, 198
Hpy99I CGWCG 4 cut(s) 160, 172, 175, 311
HpyAV CCTTC 2 cut(s) 250, 856
HpyCH4III ACNGT 3 cut(s) 599, 761, 838
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 5 cut(s) 206, 737, 767, 816, 844
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 6 cut(s) 246, 358, 824, 870, 951, 1209
HpySE526I ACGT 1 cut(s) 239
Hsp92I GRCGYC 1 cut(s) 158
Hsp92II CATG 5 cut(s) 293, 322, 737, 1021, 1102
HspAI GCGC 1 cut(s) 731
Kpn2I TCCGGA 1 cut(s) 631
Kzo9I GATC 7 cut(s) 551, 790, 873, 945, 1014, 1153, 1222
LguI GCTCTTC 1 cut(s) 945
LmnI GCTCC 3 cut(s) 221, 606, 865
Lsp1109I GCAGC 5 cut(s) 190, 604, 771, 828, 955
LweI GCATC 3 cut(s) 215, 718, 754
MaeII ACGT 1 cut(s) 239
MaeIII GTNAC 6 cut(s) 367, 523, 830, 882, 916, 1035
MalI GATC 7 cut(s) 553, 792, 875, 947, 1016, 1155, 1224
MboI GATC 7 cut(s) 551, 790, 873, 945, 1014, 1153, 1222
MboII GAAGA 8 cut(s) 75, 78, 81, 234, 333, 932, 1148, 1173
MflI RGATCY 1 cut(s) 551
MhlI GDGCHC 3 cut(s) 226, 289, 904
MluCI AATT 3 cut(s) 798, 811, 1149
MlyI GAGTC 2 cut(s) 146, 272
MmeI TCCRAC 1 cut(s) 57
MroI TCCGGA 1 cut(s) 631
MroXI GAANNNNTTC 1 cut(s) 241
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 2 cut(s) 183, 632
MspR9I CCNGG 2 cut(s) 184, 859
Mva1269I GAATGC 1 cut(s) 699
MvaI CCWGG 1 cut(s) 859
MvnI CGCG 1 cut(s) 217
MwoI GCNNNNNNNGC 1 cut(s) 293
NciI CCSGG 1 cut(s) 184
NdeII GATC 7 cut(s) 551, 790, 873, 945, 1014, 1153, 1222
NlaIII CATG 5 cut(s) 293, 322, 737, 1021, 1102
NlaIV GGNNCC 3 cut(s) 553, 821, 867
NmuCI GTSAC 4 cut(s) 367, 523, 882, 1035
NsbI TGCGCA 1 cut(s) 732
NspI RCATGY 1 cut(s) 737
NspV TTCGAA 2 cut(s) 691, 1232
PaeI GCATGC 1 cut(s) 737
PceI AGGCCT 1 cut(s) 1207
PciSI GCTCTTC 1 cut(s) 945
PcsI WCGNNNNNNNCGW 1 cut(s) 164
PctI GAATGC 1 cut(s) 699
PdmI GAANNNNTTC 1 cut(s) 241
PfeI GAWTC 5 cut(s) 29, 564, 572, 668, 718
PkrI GCNGC 7 cut(s) 205, 216, 619, 786, 843, 853, 970
PleI GAGTC 2 cut(s) 146, 272
PpsI GAGTC 2 cut(s) 146, 272
Psp124BI GAGCTC 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 857
PspGI CCWGG 1 cut(s) 857
PspN4I GGNNCC 3 cut(s) 553, 821, 867
PsuI RGATCY 1 cut(s) 551
RsaI GTAC 3 cut(s) 1005, 1097, 1116
RsaNI GTAC 3 cut(s) 1004, 1096, 1115
SacI GAGCTC 1 cut(s) 226
SapI GCTCTTC 1 cut(s) 945
SatI GCNGC 7 cut(s) 204, 215, 618, 785, 842, 852, 969
Sau3AI GATC 7 cut(s) 551, 790, 873, 945, 1014, 1153, 1222
ScaI AGTACT 1 cut(s) 1005
SchI GAGTC 2 cut(s) 146, 272
ScrFI CCNGG 2 cut(s) 184, 859
SduI GDGCHC 3 cut(s) 226, 289, 904
SfaNI GCATC 3 cut(s) 215, 718, 754
SfuI TTCGAA 2 cut(s) 691, 1232
SmlI CTYRAG 3 cut(s) 116, 530, 546
SmoI CTYRAG 3 cut(s) 116, 530, 546
SphI GCATGC 1 cut(s) 737
Sse9I AATT 3 cut(s) 798, 811, 1149
SseBI AGGCCT 1 cut(s) 1207
SsiI CCGC 5 cut(s) 201, 215, 803, 851, 971
SstI GAGCTC 1 cut(s) 226
StuI AGGCCT 1 cut(s) 1207
StyD4I CCNGG 2 cut(s) 182, 857
TaaI ACNGT 3 cut(s) 599, 761, 838
TaiI ACGT 1 cut(s) 242
TaqI TCGA 6 cut(s) 138, 155, 575, 691, 1221, 1232
TasI AATT 3 cut(s) 798, 811, 1149
TatI WGTACW 1 cut(s) 1003
TauI GCSGC 2 cut(s) 217, 854
TfiI GAWTC 5 cut(s) 29, 564, 572, 668, 718
TscAI CASTG 1 cut(s) 841
TseFI GTSAC 4 cut(s) 367, 523, 882, 1035
TseI GCWGC 5 cut(s) 203, 617, 784, 841, 968
Tsp45I GTSAC 4 cut(s) 367, 523, 882, 1035
TspDTI ATGAA 3 cut(s) 307, 1044, 1149
TspGWI ACGGA 1 cut(s) 544
TspRI CASTG 1 cut(s) 841
XceI RCATGY 1 cut(s) 737
XmnI GAANNNNTTC 1 cut(s) 241
ZrmI AGTACT 1 cut(s) 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.