RLG00000026474

Regulatory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005113
Physical Location & Seq
Forward (+)
3245332 .. 3246011
680 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026474

Sequence Viewer

Length: 495 bp
ATGAAACTTTTGTACCTTGAGAACAGAGTTGGACTAGCAAGGTACATGTTCCTCATGGAAGCAAAGGTTGTAATGGATATTACTCAACTTGATGAAACTTCAGCATTTCCATTAGCCTGCTTGAGCCCGAATAATCTCGCTGGTTCCCAGAGAACGACTGTGGACTTGAACGAGGCACCCTTCAGGATTAAGGAAGAACACCTTGCCAGAGTAAGAGCACTATGCCGATCTATGGAAATTGGGAAACGATTCTTTCCTCGTTTTTCAGAAGTACTGAACAAGATCATGGATGGCGATGACATGTCACAGCTTACATACACGGGGGATGACACAACAGAAGTAAGGCTCTCAAAGAGAAAAAGGTACATGGAAATCCAAGAAGTACTAAGTATGGTTTTTGAGGAAGACAAACAGGAAATTGATCTTTCTAGAATGTCATCTTCCTCATCTTCTACATCAGTAAGAGTAGTGAGGACTAAGCTCACCATCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0001666 GO:0002376 GO:0002682 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009627 GO:0009628 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010033 GO:0010112 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031348 GO:0032101 GO:0032870 GO:0035690 GO:0036293 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050776 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080027 GO:0080090 GO:0080134 GO:0098542 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 BTB DUF3420 NPR1_like_C

Protein Analysis

165

Amino Acids

18.9

Weight (kDa)

5.97

Isoelectric Point (pI)

56.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPR1_like_C PF12313 1 - 152 3.6e-57 NPR1/NIM1 like defence protein C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 175
AcuI CTGAAG 2 cut(s) 84, 166
AfaI GTAC 5 cut(s) 14, 44, 273, 365, 384
AfiI CCNNNNNNNGG 1 cut(s) 232
AflIII ACRYGT 2 cut(s) 45, 300
AgsI TTSAA 1 cut(s) 169
AluBI AGCT 2 cut(s) 310, 481
AluI AGCT 2 cut(s) 310, 481
Alw21I GWGCWC 1 cut(s) 220
Asp700I GAANNNNTTC 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 475
BaeI ACNNNNGTAYC 1 cut(s) 29
BanI GGYRCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 220
BccI CCATC 2 cut(s) 284, 494
BfaI CTAG 2 cut(s) 35, 429
BmcAI AGTACT 2 cut(s) 273, 384
BmiI GGNNCC 2 cut(s) 145, 177
BpiI GAAGAC 1 cut(s) 411
BpuEI CTTGAG 2 cut(s) 38, 142
Bsa29I ATCGAT 1 cut(s) 489
Bsc4I CCNNNNNNNGG 1 cut(s) 232
BseCI ATCGAT 1 cut(s) 489
BseGI GGATG 2 cut(s) 295, 331
BseLI CCNNNNNNNGG 1 cut(s) 232
BshNI GGYRCC 1 cut(s) 175
BshVI ATCGAT 1 cut(s) 489
BsiHKAI GWGCWC 1 cut(s) 220
BslI CCNNNNNNNGG 1 cut(s) 232
Bsp1286I GDGCHC 2 cut(s) 128, 220
Bsp143I GATC 3 cut(s) 227, 282, 421
BspDI ATCGAT 1 cut(s) 489
BspLI GGNNCC 2 cut(s) 145, 177
BspT107I GGYRCC 1 cut(s) 175
BssMI GATC 3 cut(s) 227, 282, 421
Bst4CI ACNGT 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 2 cut(s) 386, 477
BstF5I GGATG 2 cut(s) 295, 331
BstKTI GATC 3 cut(s) 230, 285, 424
BstMBI GATC 3 cut(s) 227, 282, 421
BstNSI RCATGY 2 cut(s) 49, 304
BstV2I GAAGAC 1 cut(s) 411
Bsu15I ATCGAT 1 cut(s) 489
BsuTUI ATCGAT 1 cut(s) 489
BtgZI GCGATG 1 cut(s) 309
BtsCI GGATG 2 cut(s) 295, 331
Cac8I GCNNGC 1 cut(s) 118
ClaI ATCGAT 1 cut(s) 489
Csp6I GTAC 5 cut(s) 13, 43, 272, 364, 383
CviAII CATG 5 cut(s) 46, 55, 286, 301, 367
CviJI RGCY 5 cut(s) 116, 126, 310, 346, 481
CviKI_1 RGCY 5 cut(s) 116, 126, 310, 346, 481
CviQI GTAC 5 cut(s) 13, 43, 272, 364, 383
DdeI CTNAG 2 cut(s) 386, 477
DpnI GATC 3 cut(s) 229, 284, 423
DpnII GATC 3 cut(s) 227, 282, 421
Eco24I GRGCYC 1 cut(s) 128
Eco57I CTGAAG 2 cut(s) 84, 166
EcoT38I GRGCYC 1 cut(s) 128
FaeI CATG 5 cut(s) 49, 58, 289, 304, 370
FaiI YATR 9 cut(s) 47, 56, 223, 233, 287, 302, 316, 368, 392
FalI AAGNNNNNCTT 2 cut(s) 186, 218
FatI CATG 5 cut(s) 45, 54, 285, 300, 366
FokI GGATG 2 cut(s) 302, 338
FriOI GRGCYC 1 cut(s) 128
FspBI CTAG 2 cut(s) 35, 429
Hin1II CATG 5 cut(s) 49, 58, 289, 304, 370
HinfI GANTC 1 cut(s) 249
HphI GGTGA 1 cut(s) 475
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 2 cut(s) 184, 429
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 1 cut(s) 190
HpyCH4III ACNGT 1 cut(s) 160
HpyF3I CTNAG 2 cut(s) 386, 477
Hsp92II CATG 5 cut(s) 49, 58, 289, 304, 370
Kzo9I GATC 3 cut(s) 227, 282, 421
LpnPI CCDG 6 cut(s) 126, 130, 161, 169, 220, 398
MaeI CTAG 2 cut(s) 35, 429
MaeIII GTNAC 1 cut(s) 303
MalI GATC 3 cut(s) 229, 284, 423
MboI GATC 3 cut(s) 227, 282, 421
MboII GAAGA 4 cut(s) 206, 416, 432, 441
MhlI GDGCHC 2 cut(s) 128, 220
MluCI AATT 2 cut(s) 237, 417
MmeI TCCRAC 1 cut(s) 10
MnlI CCTC 6 cut(s) 62, 166, 267, 394, 454, 465
MroXI GAANNNNTTC 1 cut(s) 248
MseI TTAA 1 cut(s) 189
NdeII GATC 3 cut(s) 227, 282, 421
NlaIII CATG 5 cut(s) 49, 58, 289, 304, 370
NlaIV GGNNCC 2 cut(s) 145, 177
NmuCI GTSAC 1 cut(s) 303
NspI RCATGY 2 cut(s) 49, 304
PciI ACATGT 2 cut(s) 45, 300
PdmI GAANNNNTTC 1 cut(s) 248
PfeI GAWTC 1 cut(s) 249
PscI ACATGT 2 cut(s) 45, 300
PspN4I GGNNCC 2 cut(s) 145, 177
RsaI GTAC 5 cut(s) 14, 44, 273, 365, 384
RsaNI GTAC 5 cut(s) 13, 43, 272, 364, 383
SaqAI TTAA 1 cut(s) 189
Sau3AI GATC 3 cut(s) 227, 282, 421
ScaI AGTACT 2 cut(s) 273, 384
SduI GDGCHC 2 cut(s) 128, 220
SetI ASST 7 cut(s) 18, 44, 69, 204, 312, 365, 483
SmlI CTYRAG 2 cut(s) 17, 121
SmoI CTYRAG 2 cut(s) 17, 121
Sse9I AATT 2 cut(s) 237, 417
SspMI CTAG 2 cut(s) 35, 429
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 1 cut(s) 489
TasI AATT 2 cut(s) 237, 417
TatI WGTACW 2 cut(s) 271, 382
TfiI GAWTC 1 cut(s) 249
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TseFI GTSAC 1 cut(s) 303
Tsp45I GTSAC 1 cut(s) 303
TspDTI ATGAA 2 cut(s) 17, 108
XbaI TCTAGA 1 cut(s) 428
XceI RCATGY 2 cut(s) 49, 304
XmnI GAANNNNTTC 1 cut(s) 248
XspI CTAG 2 cut(s) 35, 429
ZrmI AGTACT 2 cut(s) 273, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.