Rh2CG088000

Regulatory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0005113
Physical Location & Seq
Reverse (-)
7243303 .. 7244874
1572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG088000.1

Sequence Viewer

Length: 927 bp
ATGGTGGAGGTTCTCTATGCTTCTTCAACATCTCAAATCTCAGAACTGGTCACTCTTTACCAGAGGCATTTGCTTGATATTCTTGAAAACATAACCATAGATGATGTGTTGGTGGTTCTATATGTTGCGAATATCTGTGGTAAAGCTTGTGAGAGATTGGTGGGGAGATGTATTGAGATGATAGTGAAGTCTGATGTTGATATTGTCACCCTTGAGAAAGCATTGCCTCAAGGATCCGTGAAGCGAATCACAGATTCGAGGTTGGCTCTTGGTCTGGACAGTTCTCGGAGCAGTAATGCTGCGAGTAGCTTTCCGGATAAGCACACAAAGAGGATACACAGGGCTTTGGATTCTGATGATGTTGAGTTGGTTCGAATGCTGTTGAAAGAGGGGCATACGAATCTTGACGATGCGCATGCACTTCACTATGCTGTGGCATACTGTGATGCAAAGACCACAGCAGAGCTGCTTGATCTTGGAATTGCGGATGTGAATTGCAGGAACCTGAGGGGTTACACTGTGCTGCACCTTGCGGCGACCAGGAAGGAGCCTAAGATCATTGTGTCACTACTTACAAAGGGTGCTCGTCCCTCGGATGTTACATTGGATGGCAGGAAAGCTCTTCAGATCACTAAGCGTCTTACCAGAGCTGCGGATGATGAGTTCTTTCCTCGTTGTTCAGAAGTACTGAACAAGATCATGGATGGTGATGAAGTGTCACGGCTTACATACACGGGGAATGACACTCCAGAAATAAGGCTCTCAAAGAGAAAAAGGTACATGGAAATCCAAGAAGTACCAAGTAAGGCTTTTGATGAAGATAAACAGGAAATTGATCGTTCTGGAATGTCATCATCCTCATCTTCTACATCAGCACGAGTAGTAAGGCCTAAGCTCACTATCGATCAACATTCGAAACAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0001666 GO:0002376 GO:0002682 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009627 GO:0009628 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010033 GO:0010112 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031348 GO:0032101 GO:0032870 GO:0035690 GO:0036293 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050776 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080027 GO:0080090 GO:0080134 GO:0098542 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 BTB DUF3420 NPR1_like_C

Protein Analysis

308

Amino Acids

34.33

Weight (kDa)

6.72

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3420 PF11900 65 - 113 3e-07 Domain of unknown function (DUF3420)
Ank_2 PF12796 112 - 198 1.4e-08 Ankyrin repeats (3 copies)
NPR1_like_C PF12313 221 - 290 2.9e-23 NPR1/NIM1 like defence protein C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 414
AccIII TCCGGA 1 cut(s) 313
AciI CCGC 3 cut(s) 485, 533, 653
AclWI GGATC 2 cut(s) 228, 241
AcuI CTGAAG 1 cut(s) 608
AfaI GTAC 3 cut(s) 687, 779, 798
AgsI TTSAA 3 cut(s) 27, 86, 385
AjnI CCWGG 1 cut(s) 539
AloI GAACNNNNNNTCC 2 cut(s) 647, 679
AluBI AGCT 6 cut(s) 146, 309, 466, 620, 650, 895
AluI AGCT 6 cut(s) 146, 309, 466, 620, 650, 895
Alw21I GWGCWC 1 cut(s) 586
AlwI GGATC 2 cut(s) 228, 241
Aor13HI TCCGGA 1 cut(s) 313
AoxI GGCC 1 cut(s) 887
ApeKI GCWGC 4 cut(s) 299, 466, 523, 650
AspLEI GCGC 1 cut(s) 415
AsuHPI GGTGA 2 cut(s) 199, 719
AsuII TTCGAA 2 cut(s) 373, 914
AxyI CCTNAGG 1 cut(s) 506
BamHI GGATCC 1 cut(s) 233
BauI CACGAG 1 cut(s) 876
Bbv12I GWGCWC 1 cut(s) 586
BbvI GCAGC 4 cut(s) 286, 453, 510, 637
BccI CCATC 2 cut(s) 602, 698
BceAI ACGGC 1 cut(s) 737
BcgI CGANNNNNNTGC 2 cut(s) 398, 432
BciT130I CCWGG 1 cut(s) 541
BciVI GTATCC 1 cut(s) 327
BfuI GTATCC 1 cut(s) 327
BisI GCNGC 5 cut(s) 300, 467, 524, 534, 651
BlsI GCNGC 5 cut(s) 301, 468, 525, 535, 652
BmcAI AGTACT 1 cut(s) 687
Bme1390I CCNGG 1 cut(s) 541
BmiI GGNNCC 3 cut(s) 235, 503, 549
BmrFI CCNGG 1 cut(s) 541
BmsI GCATC 2 cut(s) 400, 436
BplI GAGNNNNNCTC 2 cut(s) 250, 282
BpmI CTGGAG 1 cut(s) 732
Bpu10I CCTNAGC 1 cut(s) 891
Bpu14I TTCGAA 2 cut(s) 373, 914
BpuEI CTTGAG 2 cut(s) 213, 233
Bsa29I ATCGAT 1 cut(s) 903
BsaJI CCNNGG 1 cut(s) 591
BsaWI WCCGGW 1 cut(s) 313
Bse1I ACTGG 1 cut(s) 51
Bse21I CCTNAGG 1 cut(s) 506
Bse3DI GCAATG 1 cut(s) 221
BseAI TCCGGA 1 cut(s) 313
BseBI CCWGG 1 cut(s) 541
BseCI ATCGAT 1 cut(s) 903
BseDI CCNNGG 1 cut(s) 591
BseGI GGATG 6 cut(s) 493, 601, 613, 661, 709, 854
BseMI GCAATG 1 cut(s) 221
BseMII CTCAG 2 cut(s) 54, 497
BseNI ACTGG 1 cut(s) 51
BseXI GCAGC 4 cut(s) 286, 453, 510, 637
BsgI GTGCAG 1 cut(s) 509
BshFI GGCC 1 cut(s) 889
BshVI ATCGAT 1 cut(s) 903
BsiHKAI GWGCWC 1 cut(s) 586
BsiSI CCGG 1 cut(s) 314
BslFI GGGAC 1 cut(s) 573
BsmFI GGGAC 1 cut(s) 573
BsmI GAATGC 1 cut(s) 381
BsnI GGCC 1 cut(s) 889
Bsp119I TTCGAA 2 cut(s) 373, 914
Bsp1286I GDGCHC 1 cut(s) 586
Bsp13I TCCGGA 1 cut(s) 313
Bsp143I GATC 7 cut(s) 233, 472, 555, 627, 696, 835, 904
BspACI CCGC 3 cut(s) 485, 533, 653
BspANI GGCC 1 cut(s) 889
BspCNI CTCAG 2 cut(s) 53, 498
BspDI ATCGAT 1 cut(s) 903
BspEI TCCGGA 1 cut(s) 313
BspLI GGNNCC 3 cut(s) 235, 503, 549
BspPI GGATC 2 cut(s) 228, 241
BspQI GCTCTTC 1 cut(s) 627
BspT104I TTCGAA 2 cut(s) 373, 914
BsrDI GCAATG 1 cut(s) 221
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 591
BssMI GATC 7 cut(s) 233, 472, 555, 627, 696, 835, 904
BssSI CACGAG 1 cut(s) 876
Bst2BI CACGAG 1 cut(s) 876
Bst2UI CCWGG 1 cut(s) 541
Bst4CI ACNGT 3 cut(s) 281, 443, 520
Bst6I CTCTTC 1 cut(s) 627
BstBI TTCGAA 2 cut(s) 373, 914
BstC8I GCNNGC 1 cut(s) 417
BstDEI CTNAG 5 cut(s) 40, 506, 552, 633, 891
BstF5I GGATG 6 cut(s) 493, 601, 613, 661, 709, 854
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 7 cut(s) 236, 475, 558, 630, 699, 838, 907
BstMBI GATC 7 cut(s) 233, 472, 555, 627, 696, 835, 904
BstNI CCWGG 1 cut(s) 541
BstNSI RCATGY 1 cut(s) 419
BstSCI CCNGG 1 cut(s) 539
BstV1I GCAGC 4 cut(s) 286, 453, 510, 637
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
Bsu15I ATCGAT 1 cut(s) 903
Bsu36I CCTNAGG 1 cut(s) 506
BsuI GTATCC 1 cut(s) 327
BsuRI GGCC 1 cut(s) 889
BsuTUI ATCGAT 1 cut(s) 903
BtsCI GGATG 6 cut(s) 493, 601, 613, 661, 709, 854
BtsIMutI CAGTG 1 cut(s) 516
Cac8I GCNNGC 1 cut(s) 417
CfoI GCGC 1 cut(s) 415
ClaI ATCGAT 1 cut(s) 903
CseI GACGC 1 cut(s) 626
Csp6I GTAC 3 cut(s) 686, 778, 797
CviAII CATG 3 cut(s) 416, 700, 781
CviQI GTAC 3 cut(s) 686, 778, 797
DdeI CTNAG 5 cut(s) 40, 506, 552, 633, 891
DpnI GATC 7 cut(s) 235, 474, 557, 629, 698, 837, 906
DpnII GATC 7 cut(s) 233, 472, 555, 627, 696, 835, 904
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
Eco147I AGGCCT 1 cut(s) 889
Eco57I CTGAAG 1 cut(s) 608
Eco81I CCTNAGG 1 cut(s) 506
EcoRII CCWGG 1 cut(s) 539
FaeI CATG 3 cut(s) 419, 703, 784
FalI AAGNNNNNCTT 2 cut(s) 793, 825
FaqI GGGAC 1 cut(s) 573
FatI CATG 3 cut(s) 415, 699, 780
Fnu4HI GCNGC 5 cut(s) 300, 467, 524, 534, 651
FokI GGATG 6 cut(s) 500, 608, 620, 668, 716, 841
Fsp4HI GCNGC 5 cut(s) 300, 467, 524, 534, 651
FspAI RTGCGCAY 1 cut(s) 414
FspI TGCGCA 1 cut(s) 414
GlaI GCGC 1 cut(s) 414
GluI GCNGC 5 cut(s) 300, 467, 524, 534, 651
GsuI CTGGAG 1 cut(s) 732
HaeIII GGCC 1 cut(s) 889
HapII CCGG 1 cut(s) 314
HgaI GACGC 1 cut(s) 626
HhaI GCGC 1 cut(s) 415
Hin1II CATG 3 cut(s) 419, 703, 784
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HindIII AAGCTT 1 cut(s) 144
HinfI GANTC 4 cut(s) 246, 254, 350, 400
HpaII CCGG 1 cut(s) 314
HphI GGTGA 2 cut(s) 199, 719
Hpy188I TCNGA 7 cut(s) 43, 193, 288, 355, 595, 627, 682
Hpy188III TCNNGA 6 cut(s) 83, 275, 314, 404, 749, 843
HpyAV CCTTC 1 cut(s) 538
HpyCH4III ACNGT 3 cut(s) 281, 443, 520
HpyCH4V TGCA 4 cut(s) 419, 449, 498, 526
HpyF3I CTNAG 5 cut(s) 40, 506, 552, 633, 891
Hsp92II CATG 3 cut(s) 419, 703, 784
HspAI GCGC 1 cut(s) 413
Kpn2I TCCGGA 1 cut(s) 313
Kzo9I GATC 7 cut(s) 233, 472, 555, 627, 696, 835, 904
LguI GCTCTTC 1 cut(s) 627
LmnI GCTCC 2 cut(s) 288, 547
Lsp1109I GCAGC 4 cut(s) 286, 453, 510, 637
LweI GCATC 2 cut(s) 400, 436
MaeIII GTNAC 6 cut(s) 49, 205, 512, 564, 598, 717
MalI GATC 7 cut(s) 235, 474, 557, 629, 698, 837, 906
MboI GATC 7 cut(s) 233, 472, 555, 627, 696, 835, 904
MboII GAAGA 4 cut(s) 15, 614, 830, 855
MflI RGATCY 1 cut(s) 233
MhlI GDGCHC 1 cut(s) 586
MluCI AATT 3 cut(s) 480, 493, 831
MnlI CCTC 9 cut(s) 57, 237, 252, 324, 382, 501, 601, 681, 868
MroI TCCGGA 1 cut(s) 313
MspI CCGG 1 cut(s) 314
MspR9I CCNGG 1 cut(s) 541
Mva1269I GAATGC 1 cut(s) 381
MvaI CCWGG 1 cut(s) 541
NdeII GATC 7 cut(s) 233, 472, 555, 627, 696, 835, 904
NlaIII CATG 3 cut(s) 419, 703, 784
NlaIV GGNNCC 3 cut(s) 235, 503, 549
NmuCI GTSAC 4 cut(s) 49, 205, 564, 717
NsbI TGCGCA 1 cut(s) 414
NspI RCATGY 1 cut(s) 419
NspV TTCGAA 2 cut(s) 373, 914
PaeI GCATGC 1 cut(s) 419
PceI AGGCCT 1 cut(s) 889
PciSI GCTCTTC 1 cut(s) 627
PctI GAATGC 1 cut(s) 381
PfeI GAWTC 4 cut(s) 246, 254, 350, 400
PkrI GCNGC 5 cut(s) 301, 468, 525, 535, 652
Psp6I CCWGG 1 cut(s) 539
PspGI CCWGG 1 cut(s) 539
PspN4I GGNNCC 3 cut(s) 235, 503, 549
PsuI RGATCY 1 cut(s) 233
RsaI GTAC 3 cut(s) 687, 779, 798
RsaNI GTAC 3 cut(s) 686, 778, 797
SapI GCTCTTC 1 cut(s) 627
SatI GCNGC 5 cut(s) 300, 467, 524, 534, 651
Sau3AI GATC 7 cut(s) 233, 472, 555, 627, 696, 835, 904
ScaI AGTACT 1 cut(s) 687
ScrFI CCNGG 1 cut(s) 541
SduI GDGCHC 1 cut(s) 586
SfaNI GCATC 2 cut(s) 400, 436
SfuI TTCGAA 2 cut(s) 373, 914
SmlI CTYRAG 2 cut(s) 212, 228
SmoI CTYRAG 2 cut(s) 212, 228
SphI GCATGC 1 cut(s) 419
Sse9I AATT 3 cut(s) 480, 493, 831
SseBI AGGCCT 1 cut(s) 889
SsiI CCGC 3 cut(s) 485, 533, 653
StuI AGGCCT 1 cut(s) 889
StyD4I CCNGG 1 cut(s) 539
TaaI ACNGT 3 cut(s) 281, 443, 520
TaqI TCGA 4 cut(s) 257, 373, 903, 914
TasI AATT 3 cut(s) 480, 493, 831
TatI WGTACW 1 cut(s) 685
TauI GCSGC 1 cut(s) 536
TfiI GAWTC 4 cut(s) 246, 254, 350, 400
TscAI CASTG 1 cut(s) 523
TseFI GTSAC 4 cut(s) 49, 205, 564, 717
TseI GCWGC 4 cut(s) 299, 466, 523, 650
Tsp45I GTSAC 4 cut(s) 49, 205, 564, 717
TspDTI ATGAA 2 cut(s) 726, 831
TspGWI ACGGA 1 cut(s) 226
TspRI CASTG 1 cut(s) 523
XceI RCATGY 1 cut(s) 419
ZrmI AGTACT 1 cut(s) 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.