Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003759

Physical Location & Seq

Genomic Coordinates Forward (+)

31721129 .. 31721987

Gene Structure 859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1313600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTGCGCAAAGTCTATTCCCGAAGAAGACGATCTTCGTCAAGAACAATTGAGTGCTCGCAAACCATCTACAGATTTCGGGGGGTTTAATACTGAAACGGATGTGGCGCAGTGGAATGTCCTGCAGTTCAATACAGGCTCGACAACCCCATTTATCATCAAGTGTGGGGCAAACTCAAATTCAGAACTGGTCGTTAAAACAGATGCCAAGATTCAAGAACCTAAAGGTGGTGAAGTTGTCAAGGTCATCCCAAGACCGTCTGTTCTGGAAAGTATGAGCTTGGAGGAGATGAAACATGTATTCTCCCAGCTCCCTGAGGCTCTGAGCTTGCTTGCCTTGGCAAGGACTGCCGATGGAACGCAAGCTAGGTATTCTAGGCTGTACAGGACTTTAGCCATGAAAGTTCCCTCTCTGAGGGATTTGGTGGGCGAACTTGAAAAGAGGGGAGTCCTAAAAGACGCGAGAATAATCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0005886 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009941 GO:0009987 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019750 GO:0022402 GO:0022607 GO:0030029 GO:0030048 GO:0030705 GO:0031022 GO:0031967 GO:0031975 GO:0032506 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051301 GO:0051640 GO:0051641 GO:0051644 GO:0051647 GO:0051649 GO:0051656 GO:0051667 GO:0061640 GO:0071840 GO:0071944 GO:0099515 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

159

Amino Acids

17.53

Weight (kDa)

6.61

Isoelectric Point (pI)

36.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10470 AT5G10470 AT5G65460 AT5G65460 AT5G65460 AT5G65460 AT5G65460 AT5G65460
fragaria_vesca	FvH4_1g19720 FvH4_1g19720
malus_domestica	MD00G1019700.v1.1 MD15G1313400.v1.1 MD15G1313600.v1.1
prunus_persica	Prupe.6G198800_v2.0.a1 Prupe.6G198800_v2.0.a1
pyrus_communis	pycom01g06640 pycom15g27690
rosa_chinensis	RchiOBHm_Chr2g0111301
rosa_laevigata	RLG00000007010 RLG00000017883
rosa_multiflora	Rmu_co8453119.1_g000001 Rmu_sc0001363.1_g000009 Rmu_sc0001363.1_g000010 Rmu_sc0036570.1_g000001 Rmu_sc0036571.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132520
rosa_rugosa	Rorug02G0172700
rosa_samantha	Rh2AG225700 Rh2BG237400 Rh2CG228700 Rh2DG233200 Rh4DG010800 Rh5BG175600
rosa_wichuraiana	Rw2G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	7
AccII	CGCG	1 cut(s)	461
AcsI	RAATTY	1 cut(s)	178
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	3 cut(s)	227, 342, 414
AflIII	ACRYGT	1 cut(s)	295
AgsI	TTSAA	3 cut(s)	130, 215, 437
AluBI	AGCT	4 cut(s)	279, 310, 327, 365
AluI	AGCT	4 cut(s)	279, 310, 327, 365
Alw21I	GWGCWC	1 cut(s)	58
ApoI	RAATTY	1 cut(s)	178
AspLEI	GCGC	2 cut(s)	8, 109
AsuHPI	GGTGA	1 cut(s)	242
AxyI	CCTNAGG	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	58
BccI	CCATC	2 cut(s)	73, 347
BfaI	CTAG	2 cut(s)	366, 375
BfmI	CTRYAG	2 cut(s)	69, 122
BmsI	GCATC	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	3 cut(s)	227, 342, 414
Bse1I	ACTGG	1 cut(s)	192
Bse21I	CCTNAGG	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	336
BseGI	GGATG	2 cut(s)	106, 246
BseLI	CCNNNNNNNGG	3 cut(s)	227, 342, 414
BseMII	CTCAG	3 cut(s)	306, 314, 404
BseNI	ACTGG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	299
BseYI	CCCAGC	1 cut(s)	306
Bsh1236I	CGCG	1 cut(s)	461
BsiHKAI	GWGCWC	1 cut(s)	58
BslI	CCNNNNNNNGG	3 cut(s)	227, 342, 414
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp1407I	TGTACA	1 cut(s)	381
Bsp143I	GATC	1 cut(s)	31
BspCNI	CTCAG	3 cut(s)	307, 315, 405
BspFNI	CGCG	1 cut(s)	461
BspMAI	CTGCAG	1 cut(s)	126
BsrGI	TGTACA	1 cut(s)	381
BsrI	ACTGG	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	1 cut(s)	31
BssT1I	CCWWGG	1 cut(s)	336
Bst4CI	ACNGT	1 cut(s)	258
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstAUI	TGTACA	1 cut(s)	381
BstC8I	GCNNGC	4 cut(s)	58, 329, 333, 363
BstDEI	CTNAG	3 cut(s)	315, 323, 413
BstENI	CCTNNNNNAGG	2 cut(s)	340, 412
BstF5I	GGATG	2 cut(s)	106, 246
BstFNI	CGCG	1 cut(s)	461
BstHHI	GCGC	2 cut(s)	8, 109
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNSI	RCATGY	1 cut(s)	299
BstSFI	CTRYAG	2 cut(s)	69, 122
BstUI	CGCG	1 cut(s)	461
BstV2I	GAAGAC	1 cut(s)	33
Bsu36I	CCTNAGG	1 cut(s)	315
BtsCI	GGATG	2 cut(s)	106, 246
BtsI	GCAGTG	1 cut(s)	116
BtsIMutI	CAGTG	1 cut(s)	116
Cac8I	GCNNGC	4 cut(s)	58, 329, 333, 363
CfoI	GCGC	2 cut(s)	8, 109
CseI	GACGC	1 cut(s)	467
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	2 cut(s)	296, 397
CviJI	RGCY	8 cut(s)	138, 279, 310, 320, 327, 365, 379, 395
CviKI_1	RGCY	8 cut(s)	138, 279, 310, 320, 327, 365, 379, 395
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	3 cut(s)	315, 323, 413
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	336
Eco81I	CCTNAGG	1 cut(s)	315
EcoNI	CCTNNNNNAGG	2 cut(s)	340, 412
EcoT14I	CCWWGG	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	2 cut(s)	299, 400
FaiI	YATR	3 cut(s)	275, 297, 398
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FatI	CATG	2 cut(s)	295, 396
FokI	GGATG	2 cut(s)	113, 233
FspBI	CTAG	2 cut(s)	366, 375
FspI	TGCGCA	1 cut(s)	7
GlaI	GCGC	2 cut(s)	7, 108
GsaI	CCCAGC	1 cut(s)	310
HgaI	GACGC	1 cut(s)	467
HhaI	GCGC	2 cut(s)	8, 109
Hin1II	CATG	2 cut(s)	299, 400
Hin6I	GCGC	2 cut(s)	6, 107
HinP1I	GCGC	2 cut(s)	6, 107
HinfI	GANTC	2 cut(s)	211, 447
HphI	GGTGA	1 cut(s)	242
Hpy188I	TCNGA	3 cut(s)	184, 324, 414
Hpy188III	TCNNGA	4 cut(s)	20, 41, 215, 266
HpyCH4III	ACNGT	1 cut(s)	258
HpyCH4V	TGCA	1 cut(s)	124
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	3 cut(s)	315, 323, 413
Hsp92II	CATG	2 cut(s)	299, 400
HspAI	GCGC	2 cut(s)	6, 107
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	1 cut(s)	315
LpnPI	CCDG	7 cut(s)	120, 134, 173, 251, 320, 327, 370
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	2 cut(s)	366, 375
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	3 cut(s)	26, 35, 38
MfeI	CAATTG	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	2 cut(s)	47, 178
MlyI	GAGTC	1 cut(s)	456
MnlI	CCTC	5 cut(s)	277, 310, 408, 418, 435
MseI	TTAA	2 cut(s)	87, 195
MunI	CAATTG	1 cut(s)	47
MvnI	CGCG	1 cut(s)	461
MwoI	GCNNNNNNNGC	1 cut(s)	347
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	2 cut(s)	299, 400
NsbI	TGCGCA	1 cut(s)	7
NspI	RCATGY	1 cut(s)	299
PciI	ACATGT	1 cut(s)	295
PfeI	GAWTC	1 cut(s)	211
PleI	GAGTC	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	455
PscI	ACATGT	1 cut(s)	295
PspFI	CCCAGC	1 cut(s)	306
PstI	CTGCAG	1 cut(s)	126
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
SaqAI	TTAA	2 cut(s)	87, 195
Sau3AI	GATC	1 cut(s)	31
SchI	GAGTC	1 cut(s)	456
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	8 cut(s)	223, 229, 246, 281, 312, 329, 367, 371
SfaNI	GCATC	1 cut(s)	193
SfcI	CTRYAG	2 cut(s)	69, 122
Sse9I	AATT	2 cut(s)	47, 178
SspMI	CTAG	2 cut(s)	366, 375
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	1 cut(s)	258
TaqI	TCGA	1 cut(s)	140
TasI	AATT	2 cut(s)	47, 178
TatI	WGTACW	1 cut(s)	381
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	2 cut(s)	87, 195
Tru9I	TTAA	2 cut(s)	87, 195
TscAI	CASTG	1 cut(s)	116
TspDTI	ATGAA	2 cut(s)	305, 413
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	116
XagI	CCTNNNNNAGG	2 cut(s)	340, 412
XapI	RAATTY	1 cut(s)	178
XceI	RCATGY	1 cut(s)	299
XspI	CTAG	2 cut(s)	366, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.