Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003759

Physical Location & Seq

Genomic Coordinates Forward (+)

1561195 .. 1562613

Gene Structure 1419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG010800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGACTACTCCGGTAGTTAGAGGTTCTGGGGAGTGTGGACTATTGAAAAGAAAAGAAAAGAACAACCTTACAAGGAAAAAGGATATTTTGCAACAAATAAGAAGTGATGCAGCCTTATTGACATTGGAAGATGGAGGTCCGCCTATTCAGAATCCTTCTACTGCTGCCGAAGATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0005886 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009941 GO:0009987 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019750 GO:0022402 GO:0022607 GO:0030029 GO:0030048 GO:0030705 GO:0031022 GO:0031967 GO:0031975 GO:0032506 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051301 GO:0051640 GO:0051641 GO:0051644 GO:0051647 GO:0051649 GO:0051656 GO:0051667 GO:0061640 GO:0071840 GO:0071944 GO:0099515 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

59

Amino Acids

6.35

Weight (kDa)

7.9

Isoelectric Point (pI)

55.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10470 AT5G10470 AT5G65460 AT5G65460 AT5G65460 AT5G65460 AT5G65460 AT5G65460
fragaria_vesca	FvH4_1g19720 FvH4_1g19720
malus_domestica	MD00G1019700.v1.1 MD15G1313400.v1.1 MD15G1313600.v1.1
prunus_persica	Prupe.6G198800_v2.0.a1 Prupe.6G198800_v2.0.a1
pyrus_communis	pycom01g06640 pycom15g27690
rosa_chinensis	RchiOBHm_Chr2g0111301
rosa_laevigata	RLG00000007010 RLG00000017883
rosa_multiflora	Rmu_co8453119.1_g000001 Rmu_sc0001363.1_g000009 Rmu_sc0001363.1_g000010 Rmu_sc0036570.1_g000001 Rmu_sc0036571.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132520
rosa_rugosa	Rorug02G0172700
rosa_samantha	Rh2AG225700 Rh2BG237400 Rh2CG228700 Rh2DG233200 Rh4DG010800 Rh5BG175600
rosa_wichuraiana	Rw2G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	46
ApeKI	GCWGC	2 cut(s)	110, 164
AspS9I	GGNCC	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	137
BbvI	GCAGC	2 cut(s)	122, 151
BccI	CCATC	1 cut(s)	125
BisI	GCNGC	2 cut(s)	111, 165
BlsI	GCNGC	2 cut(s)	112, 166
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	137
BmsI	GCATC	2 cut(s)	97, 163
BsaWI	WCCGGW	1 cut(s)	10
BseXI	GCAGC	2 cut(s)	122, 151
BsiSI	CCGG	1 cut(s)	11
BspACI	CCGC	1 cut(s)	140
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstV1I	GCAGC	2 cut(s)	122, 151
Cfr13I	GGNCC	1 cut(s)	137
CviAII	CATG	1 cut(s)	177
CviJI	RGCY	1 cut(s)	113
CviKI_1	RGCY	1 cut(s)	113
EciI	GGCGGA	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	137
EcoT22I	ATGCAT	1 cut(s)	178
FaeI	CATG	1 cut(s)	180
FaiI	YATR	1 cut(s)	178
FatI	CATG	1 cut(s)	176
Fnu4HI	GCNGC	2 cut(s)	111, 165
Fsp4HI	GCNGC	2 cut(s)	111, 165
GluI	GCNGC	2 cut(s)	111, 165
HapII	CCGG	1 cut(s)	11
Hin1II	CATG	1 cut(s)	180
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	1 cut(s)	11
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	1 cut(s)	150
Hpy8I	GTNNAC	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	165
HpyCH4V	TGCA	3 cut(s)	91, 110, 176
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
Hsp92II	CATG	1 cut(s)	180
LpnPI	CCDG	2 cut(s)	12, 24
Lsp1109I	GCAGC	2 cut(s)	122, 151
LweI	GCATC	2 cut(s)	97, 163
MboII	GAAGA	1 cut(s)	140
MnlI	CCTC	2 cut(s)	14, 128
Mph1103I	ATGCAT	1 cut(s)	178
MspI	CCGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	173
NlaIII	CATG	1 cut(s)	180
NsiI	ATGCAT	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	2 cut(s)	112, 166
PspPI	GGNCC	1 cut(s)	137
SatI	GCNGC	2 cut(s)	111, 165
Sau96I	GGNCC	1 cut(s)	137
SetI	ASST	3 cut(s)	25, 69, 139
SfaNI	GCATC	2 cut(s)	97, 163
SgeI	CNNG	3 cut(s)	23, 39, 84
SinI	GGWCC	1 cut(s)	137
SsiI	CCGC	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	151
TseI	GCWGC	2 cut(s)	110, 164
VpaK11BI	GGWCC	1 cut(s)	137
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.