Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036570.1

Orthogroup ID

OG0003759

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 577

Gene Structure 577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036570.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

gactctccacggcagcagataactgcaggaaagcttagggaaataaatgaggaagcaaaaatttttgcagttggaaataaagctcttgctgctctctttgttcatacaccagccggtgagctgcagcgccaactcagatcctggcttggagagcattttgactttctctcagttacgggagatgatgcatcaggaggcgcaaccggtcagttggagcttctttcaactgcaataatggatggttggatggccggacttggtgctgcaattcctccaaatacagatgctctcggtcaacttctatctgagtattcgaagcgggtttatagttctcagttgcagcacctgaagcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0005886 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009941 GO:0009987 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019750 GO:0022402 GO:0022607 GO:0030029 GO:0030048 GO:0030705 GO:0031022 GO:0031967 GO:0031975 GO:0032506 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051301 GO:0051640 GO:0051641 GO:0051644 GO:0051647 GO:0051649 GO:0051656 GO:0051667 GO:0061640 GO:0071840 GO:0071944 GO:0099515 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

118

Amino Acids

12.72

Weight (kDa)

5.51

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10470 AT5G10470 AT5G65460 AT5G65460 AT5G65460 AT5G65460 AT5G65460 AT5G65460
fragaria_vesca	FvH4_1g19720 FvH4_1g19720
malus_domestica	MD00G1019700.v1.1 MD15G1313400.v1.1 MD15G1313600.v1.1
prunus_persica	Prupe.6G198800_v2.0.a1 Prupe.6G198800_v2.0.a1
pyrus_communis	pycom01g06640 pycom15g27690
rosa_chinensis	RchiOBHm_Chr2g0111301
rosa_laevigata	RLG00000007010 RLG00000017883
rosa_multiflora	Rmu_co8453119.1_g000001 Rmu_sc0001363.1_g000009 Rmu_sc0001363.1_g000010 Rmu_sc0036570.1_g000001 Rmu_sc0036571.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132520
rosa_rugosa	Rorug02G0172700
rosa_samantha	Rh2AG225700 Rh2BG237400 Rh2CG228700 Rh2DG233200 Rh4DG010800 Rh5BG175600
rosa_wichuraiana	Rw2G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	319
AclWI	GGATC	1 cut(s)	132
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	60
AgeI	ACCGGT	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	225
AjnI	CCWGG	1 cut(s)	140
AluBI	AGCT	4 cut(s)	34, 83, 121, 217
AluI	AGCT	4 cut(s)	34, 83, 121, 217
AlwI	GGATC	1 cut(s)	132
AlwNI	CAGNNNCTG	2 cut(s)	141, 346
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	6 cut(s)	13, 89, 121, 124, 263, 340
ApoI	RAATTY	1 cut(s)	60
AsiGI	ACCGGT	1 cut(s)	203
AspLEI	GCGC	2 cut(s)	129, 200
AsuHPI	GGTGA	1 cut(s)	128
AsuII	TTCGAA	1 cut(s)	314
BbvI	GCAGC	6 cut(s)	25, 76, 108, 136, 250, 352
BccI	CCATC	2 cut(s)	233, 241
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	1 cut(s)	142
BfmI	CTRYAG	2 cut(s)	24, 122
BfoI	RGCGCY	1 cut(s)	130
BisI	GCNGC	6 cut(s)	14, 90, 122, 125, 264, 341
BlsI	GCNGC	6 cut(s)	15, 91, 123, 126, 265, 342
Bme1390I	CCNGG	1 cut(s)	142
BmrFI	CCNGG	1 cut(s)	142
BmsI	GCATC	3 cut(s)	175, 197, 274
Bpu10I	CCTNAGC	1 cut(s)	35
Bpu14I	TTCGAA	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	8
BsaWI	WCCGGW	1 cut(s)	203
Bse118I	RCCGGY	2 cut(s)	113, 203
BseBI	CCWGG	1 cut(s)	142
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	2 cut(s)	244, 252
BseMII	CTCAG	4 cut(s)	148, 183, 297, 347
BseXI	GCAGC	6 cut(s)	25, 76, 108, 136, 250, 352
BshFI	GGCC	1 cut(s)	251
BshTI	ACCGGT	1 cut(s)	203
BsiSI	CCGG	3 cut(s)	114, 204, 252
BsnI	GGCC	1 cut(s)	251
Bsp119I	TTCGAA	1 cut(s)	314
Bsp143I	GATC	1 cut(s)	137
BspACI	CCGC	1 cut(s)	319
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	4 cut(s)	147, 182, 298, 346
BspMAI	CTGCAG	2 cut(s)	28, 126
BspPI	GGATC	1 cut(s)	132
BspT104I	TTCGAA	1 cut(s)	314
BsrFI	RCCGGY	2 cut(s)	113, 203
BssAI	RCCGGY	2 cut(s)	113, 203
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	1 cut(s)	137
Bst2UI	CCWGG	1 cut(s)	142
BstBI	TTCGAA	1 cut(s)	314
BstDEI	CTNAG	5 cut(s)	35, 134, 169, 306, 333
BstDSI	CCRYGG	1 cut(s)	8
BstF5I	GGATG	2 cut(s)	244, 252
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	2 cut(s)	129, 200
BstKTI	GATC	1 cut(s)	140
BstMBI	GATC	1 cut(s)	137
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 151, 349
BstNI	CCWGG	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	140
BstSFI	CTRYAG	2 cut(s)	24, 122
BstV1I	GCAGC	6 cut(s)	25, 76, 108, 136, 250, 352
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
BsuRI	GGCC	1 cut(s)	251
BtgI	CCRYGG	1 cut(s)	8
BtsCI	GGATG	2 cut(s)	244, 252
CaiI	CAGNNNCTG	2 cut(s)	141, 346
CfoI	GCGC	2 cut(s)	129, 200
Cfr10I	RCCGGY	2 cut(s)	113, 203
CspAI	ACCGGT	1 cut(s)	203
CviJI	RGCY	7 cut(s)	34, 83, 113, 121, 145, 217, 251
CviKI_1	RGCY	7 cut(s)	34, 83, 113, 121, 145, 217, 251
DdeI	CTNAG	5 cut(s)	35, 134, 169, 306, 333
DpnI	GATC	1 cut(s)	139
DpnII	GATC	1 cut(s)	137
EaeI	YGGCCR	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	140
EcoT22I	ATGCAT	1 cut(s)	190
FaiI	YATR	2 cut(s)	105, 327
FauI	CCCGC	1 cut(s)	312
Fnu4HI	GCNGC	6 cut(s)	14, 90, 122, 125, 264, 341
FokI	GGATG	2 cut(s)	251, 259
Fsp4HI	GCNGC	6 cut(s)	14, 90, 122, 125, 264, 341
GlaI	GCGC	2 cut(s)	128, 199
GluI	GCNGC	6 cut(s)	14, 90, 122, 125, 264, 341
HaeII	RGCGCY	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	3 cut(s)	114, 204, 252
HhaI	GCGC	2 cut(s)	129, 200
Hin6I	GCGC	2 cut(s)	127, 198
HinP1I	GCGC	2 cut(s)	127, 198
HincII	GTYRAC	1 cut(s)	296
HindII	GTYRAC	1 cut(s)	296
HindIII	AAGCTT	1 cut(s)	32
HinfI	GANTC	1 cut(s)	2
HpaII	CCGG	3 cut(s)	114, 204, 252
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	2 cut(s)	137, 307
Hpy188III	TCNNGA	1 cut(s)	192
Hpy8I	GTNNAC	1 cut(s)	296
HpyCH4V	TGCA	7 cut(s)	26, 68, 124, 188, 230, 266, 340
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 151, 349
HpyF3I	CTNAG	5 cut(s)	35, 134, 169, 306, 333
HspAI	GCGC	2 cut(s)	127, 198
Kzo9I	GATC	1 cut(s)	137
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	8 cut(s)	12, 123, 127, 127, 154, 177, 217, 265
Lsp1109I	GCAGC	6 cut(s)	25, 76, 108, 136, 250, 352
LweI	GCATC	3 cut(s)	175, 197, 274
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	1 cut(s)	139
MboI	GATC	1 cut(s)	137
MflI	RGATCY	1 cut(s)	137
MluCI	AATT	2 cut(s)	60, 267
MmeI	TCCRAC	3 cut(s)	52, 192, 224
MnlI	CCTC	3 cut(s)	43, 188, 282
Mph1103I	ATGCAT	1 cut(s)	190
MspI	CCGG	3 cut(s)	114, 204, 252
MspR9I	CCNGG	1 cut(s)	142
MvaI	CCWGG	1 cut(s)	142
MwoI	GCNNNNNNNGC	3 cut(s)	89, 151, 349
NdeII	GATC	1 cut(s)	137
NsiI	ATGCAT	1 cut(s)	190
NspV	TTCGAA	1 cut(s)	314
PinAI	ACCGGT	1 cut(s)	203
PkrI	GCNGC	6 cut(s)	15, 91, 123, 126, 265, 342
Psp6I	CCWGG	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	140
PstI	CTGCAG	2 cut(s)	28, 126
PstNI	CAGNNNCTG	2 cut(s)	141, 346
PsuI	RGATCY	1 cut(s)	137
SatI	GCNGC	6 cut(s)	14, 90, 122, 125, 264, 341
Sau3AI	GATC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	142
SetI	ASST	5 cut(s)	36, 85, 123, 219, 348
SfaNI	GCATC	3 cut(s)	175, 197, 274
SfcI	CTRYAG	2 cut(s)	24, 122
SfuI	TTCGAA	1 cut(s)	314
Sse9I	AATT	2 cut(s)	60, 267
SsiI	CCGC	1 cut(s)	319
StyD4I	CCNGG	1 cut(s)	140
TaqI	TCGA	1 cut(s)	314
TaqII	GACCGA	1 cut(s)	281
TasI	AATT	2 cut(s)	60, 267
TseI	GCWGC	6 cut(s)	13, 89, 121, 124, 263, 340
TspDTI	ATGAA	1 cut(s)	92
XapI	RAATTY	1 cut(s)	60
Zsp2I	ATGCAT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.